HG10006405 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006405
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA polymerase zeta catalytic subunit
Location	Chr07: 18178900 .. 18189082 (+)
RNA-Seq Expression	HG10006405
Synteny	HG10006405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATTCGCAATCAGAATCGAGCGTTTTCAGTGTTCGGATCGTCTCCATCGATTACTACCTTGCGCCTCCAATTACAGGCCTCGGCGTATCCTACAGTAGTTTTCAAGGTAAACTTCATCTTCTCTTTCGCATTATGTTATGGTTTGCTTAGTTTATCCACTGTCGTGTCGACCATGGGTTTCTTTTGATTTTCAGCTCTGGCAGTCAAGGACAGGTTTAGAATTTTTATGCGAATTCATAATTTTACGTCAATGCTAGAATGATATTGGGAAGAGTTTCTATACTCTGTTTTCATTTGTTCGTTCTCAAATTGGCTACTAGTTGAACTCGACTAAGGAGAGTGTAAAAAATGAATGTAGATATTATTTGCTATATATATTATCCCCTTCATTTTTCTCGAGTACAAACTTAGCTTTGGGGTTTACTAATGTATTTTTTCGTATCATTTAATTTGAAGGCGGGAAGGTGAACGAGGTCCCGGTATTGAGAATATATGGTTCCACTCCAGCTGGTCAGAAAACATGCGTCCATGTTCATGGAGTAAGACCTGTTACTGAGTCTCGAATAGGCATTTGATTATGTATATATAATGATAGAAAATCGAGTTTTCATTGAGAAGAAAAGAAAGAATAAAAAGCACTATATACTAACTATACAAAGAAAAACCGGGGGGGGGGGGGGGGGGGGTGTCCAATCTTAGATAATTAAACCCAATGGAAAATTACAGAAGTCTTTTGAGACTGAAGCCCAAAGAAAGGCATTGAACCTGACATAAGATCACTACTTTTCCCAAGATCTCTCTCCCACCTCTCCTTTCCAGCCAATGCCTCCACATATCACAAAAAAGGAAAAGGAAAATAATTAGCACACCAAAGGATCCGACCTTCAACACTAAAAGGCAAGTATGAAAGACCTCATCCATAAAATAGCGACATCTTCAAAAACTTATATTGAACCAACAAACCAACTGCTCCATGTTTGATGAGTGTCACAGTTATTGATGTAGCCTAAGTAGCTTCAAGGAATAAACCTCCAAGAATCAATCATATGAATCTTTTATTAAGATGATAATGTGTTTCATACAAGAGGGGGAAGGTTCCTATTTATAGAGTTTTATTACAAGTGAGGGTAAAAAGGGAATTAACCTAGAATATTGCCTAATTACCTAATTAACCCCTATTCTTCTTACATCAGTTATGCTATCGAGGGTGTGTTGGTTGTGGTGTGGCCACATGCCCATGTCGACGCCTTTCTACCATGCTTTCATTTTATGTCTTTCATTTTGCATGCTAGTTTTGTTTGCTTGCCTTTTTGTTAATGTACGACTCCTCGCCACTCTCTACATGCTAGGGTGACATGATGAATGTGCCTTAAAATGTATTATGGGAGGTAAAACTAGTTGTCAATTCTCCTTACTTCGTTGTATGCTATTAAGCCAGTGCTTATCATAAATGCTTTGTAGCCACAACAAATTTTTTCTCAAATGTTTTTCCAACAATTTAAGTTCTCTTTGAAAAAAAACTTTTCCAATGATTTCCAAAACTTTATCTCTACCCCATTTTCTAGAGCCGTTTTCCTAGAAACAGGGGTTGAGATTGTGAGATAGGCCAGTCGTGGCCCTGTCGCCATGAATTTAAGTTGGGTGACTTGCTTAAGGGCGAGAACAAGTGCTGCACAACCCCTTTGCGAGTTCCTAAGAAGTGCAATTGTGACACTGGGCACCCTTTCAAAAGGGAAAAAAGACTCTTTGGCTGAATATCATATGGGTGTGTTTGTGATCAATTTAGATCGAGAGAAATTCTCGTATCTTCAACAATAAAGAACAAGACTACAAAGCTCTCCTCTTGTCAATTATGTACCTTTCATGTCTTGGTGTAACTCGAGCCCCCCTTTTGTAGTTATAGTTTATCCTATCTCATAGATCAATGGATGGCTTTTTATAAACATATTGATAGGAAGGAAGTGATTCATTTTTGTAATTTCATCATATCAATGAAATGTTTAGCCTATTAAAAAATGGTCTAATGAGGAAAGAAGAGCTAGGACATTTAACATCTCTCTATTAGATAGGAGGGTTAGAATTTTTGACATCTCTATTTTTAGATGGAGAAATACACCATGATCATGTGGCCGTGGCTTGTGGTATTCTTTTTTATTTTGTTTGGATATGATGAGAGTGCTAAGAGGGTGTCAACATAGTTGAGATGTCCAGGTGCACTCACTGATCCTAAAGATTTTATGTTTGTTTCCCTCATTGTAACTTGAGCATTAGTCTCATTTCAATATTTCAATGAAGAGACTCGTTTCCTTTAAAAAAAAAAAAAAAAATACACCATGACCACAGATAAGAAAGGAGAAAGGAGATCTCCTTGTTTAGTTTTCCTTGCCAAAAAAAAAAAACCCTCGTTTATCTCTAAGATGATGTTGTTTCTTTAAAACTTGTTATTCTTCCAATGGCTCATTTCATACAAAAGCCCCTCGAGCAGAAGAGATGGTACTAGGGTCATTGTTGTAAAGCCTTAAATTTATTATTATTGTTATTAATATTGTTGTTGTTGTTGTTCTTGTTTTGGTAATACATGTCTCTTGGTCAGCATGAGATGTTTACCATTTAATCGACCAAGTCATTTTTCTTCAACGTATTCAGCTGCCATTTTTAAGTGCATGTATACACCTTATGAACATATGTGTATGCATGCATGTTTTAAAATGATGTTTTATTTTTGTAGGTCTTACCCTATTTATATGTGCCGTGCTCAGAGATTTCATTGCAGTTGCACTCCAAAAGTATGCAACTCACGGATGTGATTATAGGTTTATTTTGGTTATCAAGCCTATTTAATGAGCATGTTACTGTTATATTTCATATTATTTGTTTTTACTTTATATTCCTAACAACAATTTAATCTATTATGTCTGTGACTCTGTATATAATTGTAAAAACATTCATTTATTATAAATATCTTCTGAAGTTAATACTAACATGAACATAACTTAGCAATGAAGATATCCCTACTAATCTAGGTCGTAGGATGTATTATTCTCAAAATATACTTGGAATCTAATCTAGGATTTAGGTTGTTGAACATCAGCAAAATTCAGCCGTTATTGCCCCCTTAACTTTTGAAGAAATAAGGTTGGCATTGAAGAATCTTGGTAAAAACAAGGTGAGGGGACCGGGTGGTTATACTACTGATTTTTTCTTGAAGTATTGGCCTCCTTGGAAAGTTGATTTTCTAAGTTTGTTTGATGAATTTCACGACAACGGTCACTTAAATTCGTGCACGAAAGAGAACTTTATATGTCTAATGCTGGAAAAAGAAGCTGCTGTTTTTGTAAAGGACTTTTGATCAATTAGTCTGACAACCTCAATATACAAAATTATTGCAGAAGTTTTAGCAGAGCGTTTGAAGAAGGTAACACTTGTTATTATTTCTTATTCTCAGAGCGCATTTGTTGAAGGGAGGCAGATTTTAGATCCTATTATTATTGCTAATGAAGCCGTGGCAGATTATAGATCTAAAAACAAAAAGGAATGGAACCCCCTCAAATTGGATTTAGAGAAAGCTTTTGACAGTATGGATTAGGAATTTCTAGAGGAAGTGATGAAAGTCAAGGGCTTATATCGAAATGGATTGGTCGGATCAATGATTATGTTAAAAACTCTACATTCTCTATTTTTTTTAATAGATGATCTCACGGCAAAATTTTAGCTTCTAGTGGGATTAGACAAGGAAACTCACTATTTTCTTTTCCTTTTCTTCTAGTTAGTGAAGTTTCGAGCAACCTTATTGACACGATTCATGCCAATGGTGTATTTGAAGGCTTTATCATAGGCAAAGATAAAGTCAATGTCCCCATTCTACAATTTGCTGATTTTTTTGAATAAGCTGAAACTACATTAGTTTACTCAAGCTAATGGCCGAAACCAAAAACTAAGAAACAATTCAATTCATAAGTTTGGTATCCAGAAATTAGAAGCATAACAAGAAAATTGTACTATCCAAGCAGTTCAAAGATCAAACAAAAATAAGACAGTCAAACAAGACAAGTTCAAAGAGGAGAAAATTCTGATAGCCACCCTTGAGATCATTAACGACATCGTAGGGAATGGGAGTAAGTCTCCATTAAAGCACCTCAACATGAACCTGGTTTGGGGCCTTCTGGTTGCCTCTTGGTACAAATGATTTCACCTTTGGGCTGACACACTCATATTTTGTAATTATGATGATATCATGATGACATGCTCAATACTCTTATCCATACTATTGAATTATTTGAATGGTGCTCAGTCGAAAAGTGAATTGGAAATAAATATGCTTTATGTGGGATTAATGTGGATGATGCTAAGTTGCACTCAACATCTTCTCGTTTGAAATGTAAAGTGGAATCTTTTCCTTTTACATATTTTGGTCTCGCTTTAGGGGTTATTCAAAGAGTAGTTAATTTTCTCAGGATAAAATTCAAAAGAAGCTAGATAGGTGGAAAAGATTCAATCTATCAAGAGGAGGAAGGTTGACACTTTGCAACTCATTTTTATCTGGCATGCCCCTTTGTTACATGTTGATTTTCTCAAAGCCTTCCAAAGTTAATATGGAAGTGGAAATAATTTTGTTTTGTTTTGGTTTGGATCGTTCGAAGGAAGCAAGATTAATCATTTACTAAAATGGGAATCGGTTTGTAAAGCACAATCTGATGGTGGTCGTGGCATGGTAGCTGGAAATTTAAAAATACGGCATTTTTGGCTAAGTGGGGTTGGAGATTTATGCTTGAAAAAGATTTTCTCTGACATAAAGTGATTCATGGCATCGATATTTATCATTGGCACACCTGAGGGAAATATGGTTTGAGGTTTTGTATCCCATGGACTAACATTTCCAAGGTTTGGAAACATGTTGAGTCTTTCGCATCCTTCAAGCTTGGAAATGGCAGAAGACTCTCTTTTTGGTCAGACAAATGAGTTTGTGATTTTTCTTTGAAATCCTACTTCTCTTGTTTGTTCAGACTATCAATTTTTCGTAGTGGTTCGCTTTTTGACCATTTGGATAGTGATACTCTTTCTTGGATATCATGCTCCGATGTTTACTTAAAGGATGAAAAGATGATGGGTTTTCAGGATATGCTTGGTGTTAAATCACTGATTGACCCAAAAACTTAAATTGATGGGTAAAGTTAAATTTAATATTATATCACCTAACACACCTCTCACTTGTGGGCTTGAAATATGTATAAGACCCAACAAGTAGAAATCGATATGAATTGAGGAGGAAATAACATTGCAGGGGTTTGAACATAAGATGTCTTAGACCATTCGCCCTGATACCATGTAAAATTACCAATTGACCAAAATGCTTAAGCTAATTGGTAAAGGTAATTTTAATATTATATCATCGAACACTTGAAATTTTAGTATGAAAGAAGGTGGTTGCATTTTTTGATACAAAGCTGGTCCCTTGATCTTTCAGGTAGTTCTTGTCCTCTATAATTCAAGAAGAAATCTCACAAAAGTATATTCCATAAGATGAGTAACTATATATAGGCGAGATAGAAACCCTAATCTAGACAATATGAAATTACAATTAAGGACAATATACATAGATAATTACAATTAAGGACATATTATAACACTCCCCCTCAAGCTGGAGCAAATATATCAATCATGCCTAGCTTGTTACATAGATAATTTATTCTTGCTCCATTCACAACTTTGGTAAGAATATCTCCCAACTGTTCTCCAGTCTTCACATATCCTGTAGATATCACTCCTTCTTGTATTTTCTCACGAATGAAATGACAGTCCACTTCAATATGTTTAGTTCGTTCATGAAACACTGGGTTGGATGCAATGTGCAGAGCAGCTTGATTATCACACCATAATTTAGTTGGCACGGTAATGCTAAAGCCCATCTCAGATAAAAATTGATGTATCCACATTATCTCACACACAGATTGTGCCATAGCTCTATATTCTGACTCCGCACTCGAACGTGAAACTACATTCTGTTTCTTACTTTCCACGACACTAAGTTCCTCCAACAAAAACACAATATCCAGTCGCCGATCTATCTTCTTCTCGAGATCCAGCCAATCTGCATCTGAAAAACACTCAACCCTTGTGTGACCATGATCTTTATATAAGATCCCACGTCAGGTGCAGCTTCAGGTAACATAAAATTTGTTCTACTGTAGCCCAATGATCTACTGTAGGAGAAGACAAACTGACTTACTATACTCACAGCATAAGCAATGTCTGATCGTGTCACAGTTAAATAGTTCAACTTCCCGACTAGTCTTCTATATCTCTCAGGATCTTTAAACAATTCACCTTCTTTGGCAAGTAGCAAATTTGGTATCATTGGAGTACTACATGGTTGACTCCTAGTTTTCCAGTCTCAGACAACAAATCAAGTACATATTTTCGTTGTGATAGATAAATACCTTTCTTGCTCCTCATTACTTCAATACCCAGAAGTATTTTAACTCTCCCAAATCTTTAGTATGAAACTGACCCGAAGAAAAGTTTTAAGAGAGGATATACCTGATACATCGTTGCCAGTGATAACAATATTATCAACATACACAACTAGCAAAGTAATACTATGCTCTGATCGTCGATAAAATACAGAATGATCAGACGTACTTTTCTTCATACCAAAACATTCAAGGGCTTGACTAAACTTACCAACCATGCATGACGCTCTGTTTCAATCCATACAGAGATTTTCGAAGTCGACACACTTTACCACTCTCCCCTGAGCACAAACCCAGGTGGTTGCTCCATATAAACTTCTTCTTGAAGATCACCATGTAGAAAAGCATTCTTAATATCAAGTTGATGCAAAGACCATTTGTGAGTAGCAGCCATGGAAAGAAACAATCGAATGGAAGTCAATTTGGCAACAGGAGAAAAAGTATCAGATTAATCAGTTCCATAGATTTGGGCACAACCCTTGGCAACAAGGCGAGCTTTCAGACGAGCCACTGTGTCGTCAGGATTGAATTTGATAGCAAACACCCAATTGCCTTCTTGCCTGCCGGCGGAGACACTAAATCCCAAGTACCATTGTCATCCAAAGCAGTCATCTCCTCAATCATTGCACTACGCCACCCAGGATGAGATAAAGCTTCATGAAAAGAGTTAGGAATAAAAGTGGAATCAAGAGATGTAAGAAAGGAATAAGTGGGAGGAGACAACTGGTTATACGAAACAAATGAAGAAATGGGATAAGTACAAGTGTGCTTACCTTTTCGAAGGGCAATAGGAAGATCATCACTCGATCCTGGATCAGATGTCGAAGAAGGTAGAGGTGGAGGACATGTTCCTGAGGGTTGTTGAGGAGGTCGTCTGGAGAAGACTCGAGTACAGGTGGAGGAGACGAAAGAGATACAGAAGACGAGAGAAGAGACGGTGTAGGAACGGTAACTTTGGTAATCTCATAAATCAAAGATCATCATCCTCCCCTTGACAAGGACTTGACGGTGAAGAACTAAAGGGTATATCTTCAAAAAACGTAACATCAGGAGATACAAGATATCTGTTCAGATTAGGAGAATAACAACGATAACCCTTTTGAACACGCGAATAGCCTAAGAATATGCATTTCAAAGATTTTGGATCTAACTTAGTACGATGGGACTAACATCCCGAACAAAACACACACACCAAATATCTTAAGAGCAATAGGAAACAAAGGTTTGTAGGAAACAAACACGATAGGGAATCACCGCTGAGAACAGAAGAGGGCTTCTATTAATCAGGAAGCAAGCGTGGAAACAGCATCCGCCAAAAAGGCTTAGGGACATGCATTTGAAAGGATAGGGCTCGAGCTGTTTCAAGTAGGTGTCGGTTTTTCTTTCAGCAACTCCATTTTGAGATGGAGTGTCAGGACACGAGGATGATGAATGATACCATTATCACGTAAGTAAGACCCAAGTACATGAGAAAAATATTCACCAGCATTATCAGTGTGCAGGATTTTGATAGAGCATCAAATTGAGTTCGAATTTCAGCATGAAAAGCACAAAATGAGATAGTAATTCAGAACGATTTTTCATTAATATAACCAAGTCACACGAGTATAATCGTCAACAAAAGTAACAAAATAACGAAAACCAGTTTGGGACACAACAGGACAAGGACCCCAAATATCAGAGTGAACTAACTCAAATGGAGCACTAGCTCGTTTATGGACTCTAGGACTAGAACTAAGACGATGAAACTTAGCAAACTGACACGAATCACAATTTAAAGAAGACAAAGAACAAAATTCGGGATAAAGTTGCTTCAACACAGACAGTGATGGATGACCTAAACGACAATGAACTTCAAACGGGGATGTAAAGGCCTCCTGACTCATGTCCTCTACCAATAATCTTCTTCGTCACATGATCCTGAAACAAGCAATAACCAGGAAAAAAAGAGAAAACAGTTAAGGTCACGAGTAAGTTGACTAATAGAGATTAAATTAAAAGACAATTGAGGCAAATGTAACACAGAAGACAAAGAAAGGGAAGAGGTGAGATTAACGGTGCCGGAGCCAAGGACAGAAGAGGTTGAGCCATCTGCCAAGGTAACAATGGGGATGTAACAGATGGGGATGAGGTAGGGGACAAAGGACTAGAAAACAAGTTAGAATTATCTGTCATATGAGTAGTGGCACCAGAGTCTATCACCCATTTGGTAGATGATGTAAGGAGGCATTTTGTATTACCTGTCTCAGCAATGGTGGCAATAGGAGTCGATGAAGAAGATGCCTGTAGGGATTCCTGGAATACTTGGAATTTAGCAAAGTTTTCAGCAGAGATGGTAACAGACTTCTCAGGCATATCAGTGGTGGAAGCTATCTGAGCATGCTGAGATCTCTGAGTCTTATACAGCAGTTTTCGACAATCACGTTTCAGATGGCCTAGCTTACGACAATAATGACAGACGATCTCCTGAGAAATCTGATTTTCGACTATCATAGGTAGGCTTCTGAAAATGGTTAGGCATCCCTAAAGGAGCTCGGGGGTGATCATTCTTGCTTATAAGAGCATTGCTCGGTTGAGACATAGACGAACCAGATTGAGAACTCTCAATACGGAGAACACGACTAAAGGTGTCGTCTAGCGATGGAATGTCAGAATAAGATAAAATTTGTGTTTTAGCCATGCCAAATTCAGGTGACAGCCCATTCAAAAATATCATAACAGCCATCTTTTCGCGTTGAGCTTGTTGAACTTTGATATCAGGGCTGAAAGGTAATAATAAGGCAAGTTCAACGACTATCTTCTTTAATCTCATAAAATAGCTTGTAACAGATTCTGCCTTCTGTTCGGCTCGAAAAAACTGCATGCAAACATCAAACATTCGATGGACGTGTTCTTTCCCCGAATAAAGAAATTCCAAGAACGCTAAAAGTTCCTTCACAGAATTACAATGATTCACCAAGCCAACGACTTCACTCTCAATGGAGTTCTTAATCTGAAGATAAAGACGAGCATCATCGCGAAGCCAACCCTTTTTCTTATCATCTTTCGGTGGATCCTCAGTCACATGATCATCCATATCAGTACTCAGTAAGTAAAACTGAATCGTTCTTCGCCACTCATAGTAATTGGATCCATTTAACTTGTGTTCGGTGATCTTGGATGATAATGGAAGTACATTAGACACCACCATATGTGTCGGTTCAGCCATGACAACGTACCACACAACTTGTAGATCTCGAAAATAGGGTAGATGCAAAAAAAAAAGACAGTGAACCAAAGACCCGGAATAACTAAAACAGCCCCAAAAAGGACCAAAACAGTCACAAACCCTAAGGGCAAAATGGGTATTTTCGAAATAACCTCACACCCGAGACGATTTCGATGGAACCAAAGGTACAGACAGGTCGGAAACTCAAAACCGAGAAGAACCTAGCTGACGGACGTGGAACCGGAGGTCCCACGCTCCCCCACGCGCCGGCGCGTGACGGAGGAGTTCGACAGTTCAGGCGGCGCGTGAGCCTCACGCGTGGCAGTTCCCGGCAACTGACGAAGACAGACGGCTTCGGAAGGTGGTGGCGCTTCTCCTAAGGTGGGTGGTGTCGACAAACGGCCACTCGAAATCGATGACCAAAATACCAAATCCTAACTCTATGAGATTGTTGTCGTCAAACGAAAGTTCGAAAGTTCGAAACTTTAGAGGGCTCTGA

mRNA sequence

ATGGGGGATTCGCAATCAGAATCGAGCGTTTTCAGTGTTCGGATCGTCTCCATCGATTACTACCTTGCGCCTCCAATTACAGGCCTCGGCGTATCCTACAGTAGTTTTCAAGGCGGGAAGGTGAACGAGGTCCCGGTATTGAGAATATATGGTTCCACTCCAGCTGGTCAGAAAACATGCGTCCATGTTCATGGACGGAGGAGTTCGACAGTTCAGGCGGCGCGTGAGCCTCACGCGTGGCAGTTCCCGGCAACTGACGAAGACAGACGGCTTCGGAAGGTGGTGGCGCTTCTCCTAAGGTGGGTGGTGTCGACAAACGGCCACTCGAAATCGATGACCAAAATACCAAATCCTAACTCTATGAGATTGTTGTCGTCAAACGAAAGTTCGAAAGTTCGAAACTTTAGAGGGCTCTGA

Coding sequence (CDS)

ATGGGGGATTCGCAATCAGAATCGAGCGTTTTCAGTGTTCGGATCGTCTCCATCGATTACTACCTTGCGCCTCCAATTACAGGCCTCGGCGTATCCTACAGTAGTTTTCAAGGCGGGAAGGTGAACGAGGTCCCGGTATTGAGAATATATGGTTCCACTCCAGCTGGTCAGAAAACATGCGTCCATGTTCATGGACGGAGGAGTTCGACAGTTCAGGCGGCGCGTGAGCCTCACGCGTGGCAGTTCCCGGCAACTGACGAAGACAGACGGCTTCGGAAGGTGGTGGCGCTTCTCCTAAGGTGGGTGGTGTCGACAAACGGCCACTCGAAATCGATGACCAAAATACCAAATCCTAACTCTATGAGATTGTTGTCGTCAAACGAAAGTTCGAAAGTTCGAAACTTTAGAGGGCTCTGA

Protein sequence

MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGRRSSTVQAAREPHAWQFPATDEDRRLRKVVALLLRWVVSTNGHSKSMTKIPNPNSMRLLSSNESSKVRNFRGL

Homology

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BLAST of HG10006405 vs. NCBI nr
Match: KAG7030229.1 (DNA polymerase zeta catalytic subunit [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC
Sbjct: 1  MGDSQSESSIFSVRIVSIDYYLAPPIPGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

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BLAST of HG10006405 vs. NCBI nr
Match: KAG6599224.1 (DNA polymerase zeta catalytic subunit, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC
Sbjct: 1  MGDSQSESSIFSVRIVSIDYYLAPPIPGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

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BLAST of HG10006405 vs. NCBI nr
Match: XP_023545347.1 (LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVP+LRIYGSTPAGQKTC
Sbjct: 1  MGDSQSESSIFSVRIVSIDYYLAPPIPGLGVSYSSFQGGKVNEVPILRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

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BLAST of HG10006405 vs. NCBI nr
Match: XP_022999038.1 (DNA polymerase zeta catalytic subunit [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-26
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKV+EVPVLRIYGSTPAGQKTC
Sbjct: 1  MGDSQSESSIFSVRIVSIDYYLAPPIPGLGVSYSSFQGGKVSEVPVLRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

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BLAST of HG10006405 vs. NCBI nr
Match: XP_038890093.1 (DNA polymerase zeta catalytic subunit isoform X1 [Benincasa hispida] >XP_038890094.1 DNA polymerase zeta catalytic subunit isoform X1 [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-26
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGD QSESSVFSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC
Sbjct: 1  MGDLQSESSVFSVRIVSIDYYLAPPIPGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

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BLAST of HG10006405 vs. ExPASy Swiss-Prot
Match: Q766Z3 (DNA polymerase zeta catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=REV3 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-22
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC
Sbjct: 1  MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 60

Query: 61 VHVH 65
          +H+H
Sbjct: 61 LHIH 64

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BLAST of HG10006405 vs. ExPASy Swiss-Prot
Match: O60673 (DNA polymerase zeta catalytic subunit OS=Homo sapiens OX=9606 GN=REV3L PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-12
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 10 VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG 66
          +FSVRIV+ DYY+A P+ GL    S      V +VPV+R++G+TPAGQKTC+H+HG
Sbjct: 1  MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHG 56

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BLAST of HG10006405 vs. ExPASy Swiss-Prot
Match: Q61493 (DNA polymerase zeta catalytic subunit OS=Mus musculus OX=10090 GN=Rev3l PE=1 SV=3)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 10 VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG 66
          +FSVRIV+ DYY+A P+ GL    S      V +VPV+R++G+TPAGQKTC+H+HG
Sbjct: 1  MFSVRIVTADYYMASPLPGLDTCQSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHG 56

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BLAST of HG10006405 vs. ExPASy Swiss-Prot
Match: Q9GSR1 (DNA polymerase zeta catalytic subunit OS=Drosophila melanogaster OX=7227 GN=DNApol-zeta PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 10 VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG 66
          V+SVR+V  D+Y+  P  G+   YS  +G ++  VPV+R++G    GQKTC+HVHG
Sbjct: 11 VYSVRLVIADFYMEKPQFGMDPCYSELRGKEIKRVPVIRVFGGNSRGQKTCMHVHG 66

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BLAST of HG10006405 vs. ExPASy TrEMBL
Match: A0A6J1KIG8 (DNA polymerase zeta catalytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111493549 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.8e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKV+EVPVLRIYGSTPAGQKTC
Sbjct: 1  MGDSQSESSIFSVRIVSIDYYLAPPIPGLGVSYSSFQGGKVSEVPVLRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

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BLAST of HG10006405 vs. ExPASy TrEMBL
Match: A0A0A0LFW0 (DNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G030010 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 71/111 (63.96%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 1   MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
           MGDSQSES VFSVRIVSIDYYLAPPI GL +SYSSFQGGKVNEVPVLRIYGSTPAGQKTC
Sbjct: 1   MGDSQSESRVFSVRIVSIDYYLAPPIPGLDISYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60

Query: 61  VHVHGRRSSTVQAAREPHAWQFPATDEDRRLRKVVALLLRWVVSTNGHSKS 112
           VHVHG          E      P  D+   L   V+L L   +   G+S S
Sbjct: 61  VHVHGVLPYLYVPCSE---ILLPLNDKGEALGNNVSLALEKALKLKGNSGS 108

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BLAST of HG10006405 vs. ExPASy TrEMBL
Match: A0A6J1DA95 (DNA polymerase zeta catalytic subunit OS=Momordica charantia OX=3673 GN=LOC111018806 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.7e-26
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          M DSQSESS+FSVRIVSIDYYLAPPI GLG+SYSSFQGGKVNEVPVLRIYG TPAGQKTC
Sbjct: 1  MADSQSESSIFSVRIVSIDYYLAPPIPGLGISYSSFQGGKVNEVPVLRIYGPTPAGQKTC 60

Query: 61 VHVHG 66
          +H+HG
Sbjct: 61 IHIHG 65

[Close]

BLAST of HG10006405 vs. ExPASy TrEMBL
Match: A0A6J1G355 (DNA polymerase zeta catalytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111450356 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGD+QSESS+FSVRIVSIDYYLAPPI GLGVSYS FQGGKVN VPVLRIYGSTPAGQKTC
Sbjct: 1  MGDAQSESSIFSVRIVSIDYYLAPPIPGLGVSYSRFQGGKVNVVPVLRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

[Close]

BLAST of HG10006405 vs. ExPASy TrEMBL
Match: A0A5D3CRJ8 (DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00710 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          MGDSQ+ES VFSVR+VSIDYYLAPPI GL +SYSSFQGGKVNEVPVLRIYGSTPAGQKTC
Sbjct: 1  MGDSQAESCVFSVRVVSIDYYLAPPIPGLDISYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60

Query: 61 VHVHG 66
          VHVHG
Sbjct: 61 VHVHG 65

[Close]

BLAST of HG10006405 vs. TAIR 10
Match: AT1G67500.1 (recovery protein 3 )

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-23
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC
Sbjct: 1  MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 60

Query: 61 VHVH 65
          +H+H
Sbjct: 61 LHIH 64

[Close]

BLAST of HG10006405 vs. TAIR 10
Match: AT1G67500.2 (recovery protein 3 )

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-23
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTC 60
          M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC
Sbjct: 1  MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 60

Query: 61 VHVH 65
          +H+H
Sbjct: 61 LHIH 64

The following BLAST results are available for this feature:

BLAST of HG10006405 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030229.1	4.8e-27	96.92	DNA polymerase zeta catalytic subunit [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6599224.1	4.8e-27	96.92	DNA polymerase zeta catalytic subunit, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023545347.1	6.2e-27	95.38	LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit [Cucurbita pepo subsp...	[more]
XP_022999038.1	1.8e-26	95.38	DNA polymerase zeta catalytic subunit [Cucurbita maxima]	[more]
XP_038890093.1	1.8e-26	96.92	DNA polymerase zeta catalytic subunit isoform X1 [Benincasa hispida] >XP_0388900...	[more]

BLAST of HG10006405 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q766Z3	3.7e-22	75.00	DNA polymerase zeta catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=REV3 PE...	[more]
O60673	4.5e-12	55.36	DNA polymerase zeta catalytic subunit OS=Homo sapiens OX=9606 GN=REV3L PE=1 SV=2	[more]
Q61493	1.3e-11	55.36	DNA polymerase zeta catalytic subunit OS=Mus musculus OX=10090 GN=Rev3l PE=1 SV=...	[more]
Q9GSR1	1.6e-09	46.43	DNA polymerase zeta catalytic subunit OS=Drosophila melanogaster OX=7227 GN=DNAp...	[more]

BLAST of HG10006405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIG8	8.8e-27	95.38	DNA polymerase zeta catalytic subunit OS=Cucurbita maxima OX=3661 GN=LOC11149354...	[more]
A0A0A0LFW0	1.5e-26	63.96	DNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G030010 PE=3 SV=1	[more]
A0A6J1DA95	9.7e-26	89.23	DNA polymerase zeta catalytic subunit OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1G355	1.3e-25	92.31	DNA polymerase zeta catalytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111450...	[more]
A0A5D3CRJ8	1.7e-25	90.77	DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00710...	[more]

BLAST of HG10006405 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67500.1	2.6e-23	75.00	recovery protein 3	[more]
AT1G67500.2	2.6e-23	75.00	recovery protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.342.10	DNA Polymerase, chain B, domain 1	coord: 29..115 e-value: 1.8E-5 score: 26.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..138
IPR030559	DNA polymerase zeta catalytic subunit	PANTHER	PTHR45812	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	coord: 7..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006405.1	HG10006405.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0019985	translesion synthesis
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016035	zeta DNA polymerase complex
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding