HG10006347 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006347
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA polymerase II-associated protein 3 isoform X1
Location	Chr07: 17561471 .. 17562370 (+)
RNA-Seq Expression	HG10006347
Synteny	HG10006347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAGTACATCCAAACTTCGTGGGCTATGTTATTTTTTTCGCTTTGGCCCAATCAGCTGGGATTTTACAGATTTTGAATCCACGGCGAAAACTCCGACCGGCGAACGGCTCCGACTCCGTGGAATTGCTGGACGCTTCGAGAAGCTCTTTCGAAGACCAGCTGCTACAATTTTCCATATTCTCTTTCTTCGTCTGGATTCTTCTTTTCTTCTGCTCTCCCATGGCCGATTCCTCCGGCAAGCACGGGCGCGATCAGCCTCTGGTATTTCCATTTTTCTCAACCCGCTGTAGTTCAGAGATTAAACGCCTTCTTTCTTTCTTTCTTTATTGCTTGAAAAACGAGGAGAAACATGAACTTTTCTTCCAATTAGTTATAGCACTTGTAGCTTTGAGTTGAGTTTCCAATTTCTGTATAATTCATTGTATGTGGAAACGAAGCGGACTGGCTAAGTATGCAACACTCCTGGTTATTACCTCGTGGTTTGTTGAACATTGGGATTCGGTGGGGTATGAATGATGATGTGCAGTTCTGTTCACTTGCATTGGAGTGATTAATTAGCTGAATGTATTGAAAATAGGGGTTAGAAATTGTAATCTGATTTACCACGAAATCATTGTTCTTGGTGTGTTAAGTTAAATGCATGGCTGCGTTTGTTGGCTTTTCTTATTGAGTTGTATGTGTTTTGGGCGCATTCTTTTTCTCCAGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAACTCTCCTTCAAGGGAAAAGACAAGAAACTGAAGCCACAGGCCACTGGTAAAGAAAAGGAGGTATTACTCTATCAAATTTTCAGCTGCACAGTGAACTGCACATTTAAAAAACAAAAACGGCTAAGCCATCATGGGTTGGCCTATGGGTAG

mRNA sequence

ATGTTGAGAGTACATCCAAACTTCGTGGGCTATGTTATTTTTTTCGCTTTGGCCCAATCAGCTGGGATTTTACAGATTTTGAATCCACGGCGAAAACTCCGACCGGCGAACGGCTCCGACTCCGTGGAATTGCTGGACGCTTCGAGAAGCTCTTTCGAAGACCAGCTGCTACAATTTTCCATATTCTCTTTCTTCGTCTGGATTCTTCTTTTCTTCTGCTCTCCCATGGCCGATTCCTCCGGCAAGCACGGGCGCGATCAGCCTCTGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAACTCTCCTTCAAGGGAAAAGACAAGAAACTGAAGCCACAGGCCACTGGTAAAGAAAAGGAGGTATTACTCTATCAAATTTTCAGCTGCACAGTGAACTGCACATTTAAAAAACAAAAACGGCTAAGCCATCATGGGTTGGCCTATGGGTAG

Coding sequence (CDS)

ATGTTGAGAGTACATCCAAACTTCGTGGGCTATGTTATTTTTTTCGCTTTGGCCCAATCAGCTGGGATTTTACAGATTTTGAATCCACGGCGAAAACTCCGACCGGCGAACGGCTCCGACTCCGTGGAATTGCTGGACGCTTCGAGAAGCTCTTTCGAAGACCAGCTGCTACAATTTTCCATATTCTCTTTCTTCGTCTGGATTCTTCTTTTCTTCTGCTCTCCCATGGCCGATTCCTCCGGCAAGCACGGGCGCGATCAGCCTCTGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAACTCTCCTTCAAGGGAAAAGACAAGAAACTGAAGCCACAGGCCACTGGTAAAGAAAAGGAGGTATTACTCTATCAAATTTTCAGCTGCACAGTGAACTGCACATTTAAAAAACAAAAACGGCTAAGCCATCATGGGTTGGCCTATGGGTAG

Protein sequence

MLRVHPNFVGYVIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKEVLLYQIFSCTVNCTFKKQKRLSHHGLAYG

Homology

[Close]

BLAST of HG10006347 vs. NCBI nr
Match: XP_008453365.2 (PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-20
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 12  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLF 71
           ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L F
Sbjct: 1   MLFFALAQS---VRISTDFESSAVTPTGEHLWTLPEALSKTICYYFPFSLYSSLLF-LSF 60

Query: 72  FCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           FCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKKLKPQA GKEKE
Sbjct: 61  FCSSMADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKE 107

[Close]

BLAST of HG10006347 vs. NCBI nr
Match: XP_008453348.2 (PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-20
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 12  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLF 71
           ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L F
Sbjct: 1   MLFFALAQS---VRISTDFESSAVTPTGEHLWTLPEALSKTICYYFPFSLYSSLLF-LSF 60

Query: 72  FCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           FCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKKLKPQA GKEKE
Sbjct: 61  FCSSMADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKE 107

[Close]

BLAST of HG10006347 vs. NCBI nr
Match: XP_038890653.1 (RNA polymerase II-associated protein 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-16
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           MADSSGKHGRDQP+DFQGFLNDLQDWELSFKGKDKKLKPQA  KEKE
Sbjct: 1   MADSSGKHGRDQPMDFQGFLNDLQDWELSFKGKDKKLKPQAISKEKE 47

[Close]

BLAST of HG10006347 vs. NCBI nr
Match: XP_038890654.1 (RNA polymerase II-associated protein 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-16
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           MADSSGKHGRDQP+DFQGFLNDLQDWELSFKGKDKKLKPQA  KEKE
Sbjct: 1   MADSSGKHGRDQPMDFQGFLNDLQDWELSFKGKDKKLKPQAISKEKE 47

[Close]

BLAST of HG10006347 vs. NCBI nr
Match: XP_038890655.1 (RNA polymerase II-associated protein 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-16
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           MADSSGKHGRDQP+DFQGFLNDLQDWELSFKGKDKKLKPQA  KEKE
Sbjct: 1   MADSSGKHGRDQPMDFQGFLNDLQDWELSFKGKDKKLKPQAISKEKE 47

[Close]

BLAST of HG10006347 vs. ExPASy TrEMBL
Match: A0A1S3BWU0 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494093 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.0e-21
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 12  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLF 71
           ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L F
Sbjct: 1   MLFFALAQS---VRISTDFESSAVTPTGEHLWTLPEALSKTICYYFPFSLYSSLLF-LSF 60

Query: 72  FCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           FCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKKLKPQA GKEKE
Sbjct: 61  FCSSMADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKE 107

[Close]

BLAST of HG10006347 vs. ExPASy TrEMBL
Match: A0A1S3BW25 (RNA polymerase II-associated protein 3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494093 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.0e-21
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 12  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLF 71
           ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L F
Sbjct: 1   MLFFALAQS---VRISTDFESSAVTPTGEHLWTLPEALSKTICYYFPFSLYSSLLF-LSF 60

Query: 72  FCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           FCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKKLKPQA GKEKE
Sbjct: 61  FCSSMADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKE 107

[Close]

BLAST of HG10006347 vs. ExPASy TrEMBL
Match: A0A0A0LGI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034580 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           MADSS KHGRDQ LDFQGFLNDLQDWE+SFKGKDKKLKPQA GKEKE
Sbjct: 1   MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKE 47

[Close]

BLAST of HG10006347 vs. ExPASy TrEMBL
Match: A0A6J1DUX9 (RNA polymerase II-associated protein 3 OS=Momordica charantia OX=3673 GN=LOC111023318 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           MADSSGKHGRD  LDFQGFLND+QDWELS KGKDKKLKPQA GKEKE
Sbjct: 1   MADSSGKHGRDSSLDFQGFLNDMQDWELSLKGKDKKLKPQAFGKEKE 47

[Close]

BLAST of HG10006347 vs. ExPASy TrEMBL
Match: A0A6J1HPT1 (RNA polymerase II-associated protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465531 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE 123
           MADSSGKHGRDQPLDFQGFLNDLQDWELS  G+DKKLKP A  KEKE
Sbjct: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKE 47

[Close]

BLAST of HG10006347 vs. TAIR 10
Match: AT1G56440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQ 116
           MA S  KHGRDQ  DFQGF NDLQDWELS K KDKK+K Q
Sbjct: 1   MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQ 40

[Close]

BLAST of HG10006347 vs. TAIR 10
Match: AT1G56440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 76  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQ 116
           MA S  KHGRDQ  DFQGF NDLQDWELS K KDKK+K Q
Sbjct: 1   MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQ 40

The following BLAST results are available for this feature:

BLAST of HG10006347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453365.2	1.2e-20	55.86	PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Cucumis melo]	[more]
XP_008453348.2	1.2e-20	55.86	PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo]	[more]
XP_038890653.1	1.1e-16	93.62	RNA polymerase II-associated protein 3 isoform X1 [Benincasa hispida]	[more]
XP_038890654.1	1.1e-16	93.62	RNA polymerase II-associated protein 3 isoform X2 [Benincasa hispida]	[more]
XP_038890655.1	1.1e-16	93.62	RNA polymerase II-associated protein 3 isoform X3 [Benincasa hispida]	[more]

BLAST of HG10006347 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BWU0	6.0e-21	55.86	RNA polymerase II-associated protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3BW25	6.0e-21	55.86	RNA polymerase II-associated protein 3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LGI8	1.0e-15	91.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034580 PE=4 SV=1	[more]
A0A6J1DUX9	2.2e-15	89.36	RNA polymerase II-associated protein 3 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HPT1	4.9e-15	87.23	RNA polymerase II-associated protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of HG10006347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56440.1	1.9e-11	75.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G56440.2	1.9e-11	75.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006347.1	HG10006347.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0031011	Ino80 complex
cellular_component	GO:0016021	integral component of membrane