HG10006330 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006330
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein NIM1-INTERACTING 1
Location	Chr07: 17402857 .. 17403207 (-)
RNA-Seq Expression	HG10006330
Synteny	HG10006330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGAGGAAGAAAAAGAAGAAGGTTGGAAGAGGAAGAAGAAGATGATGAAGAGAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATAAGAGACAGAATGAAATCAAAAGATCAATCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATGGAAATTACAACAACAAATCCAACATCACTCTTCAATTATTAGCTGCTTCATCTTCAACAACAAAACAGAGCAATCCAAAGAAAGAACAACAAGAACAAGAACATAAACACAAGGTAGGAAAAGGGAAAATGGGGCTTGACCTTAATCTCTCTCTTTGA

mRNA sequence

ATGGAAAGAGGAAGAAAAAGAAGAAGGTTGGAAGAGGAAGAAGAAGATGATGAAGAGAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATAAGAGACAGAATGAAATCAAAAGATCAATCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATGGAAATTACAACAACAAATCCAACATCACTCTTCAATTATTAGCTGCTTCATCTTCAACAACAAAACAGAGCAATCCAAAGAAAGAACAACAAGAACAAGAACATAAACACAAGGTAGGAAAAGGGAAAATGGGGCTTGACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGGAAAGAGGAAGAAAAAGAAGAAGGTTGGAAGAGGAAGAAGAAGATGATGAAGAGAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATAAGAGACAGAATGAAATCAAAAGATCAATCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATGGAAATTACAACAACAAATCCAACATCACTCTTCAATTATTAGCTGCTTCATCTTCAACAACAAAACAGAGCAATCCAAAGAAAGAACAACAAGAACAAGAACATAAACACAAGGTAGGAAAAGGGAAAATGGGGCTTGACCTTAATCTCTCTCTTTGA

Protein sequence

MERGRKRRRLEEEEEDDEEKLFFALIQNTKAIRDRMKSKDQSTEEEKSKGVWNPKFQPEDFIEDGNYNNKSNITLQLLAASSSTTKQSNPKKEQQEQEHKHKVGKGKMGLDLNLSL

Homology

[Close]

BLAST of HG10006330 vs. NCBI nr
Match: XP_038889660.1 (protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-34
Identity = 88/109 (80.73%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MERGRKRRRLEEEEEDDEE-----KLFFALIQNTKAIRDRMKSKDQSTEEEKSKGVWNPK 60
           MERGRKRR+LEEEEE+D++     KL FALIQN KA+R RMKSK +S EEEKSKGVWNPK
Sbjct: 1   MERGRKRRKLEEEEEEDDDEEGEMKLVFALIQNIKAMRGRMKSK-ESPEEEKSKGVWNPK 60

Query: 61  FQPEDFIEDGNYNNKSNITLQLLAASSSTTKQSNPKKEQQEQEHKHKVG 105
           FQPEDFIEDG YNNKSNITLQL AASSSTTK SNPKKEQQEQ+ KHKVG
Sbjct: 61  FQPEDFIEDGYYNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHKVG 108

[Close]

BLAST of HG10006330 vs. NCBI nr
Match: XP_038889662.1 (protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 6.4e-33
Identity = 86/107 (80.37%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MERGRKRRRLEEEEEDDEE-----KLFFALIQNTKAIRDRMKSKDQSTEEEKSKGVWNPK 60
           MERGRKRR+LEEEEE+D++     KL FALIQN KA+R RMKSK +S EEEKSKGVWNPK
Sbjct: 1   MERGRKRRKLEEEEEEDDDEEGEMKLVFALIQNIKAMRGRMKSK-ESPEEEKSKGVWNPK 60

Query: 61  FQPEDFIEDGNYNNKSNITLQLLAASSSTTKQSNPKKEQQEQEHKHK 103
           FQPEDFIEDG YNNKSNITLQL AASSSTTK SNPKKEQQEQ+ KHK
Sbjct: 61  FQPEDFIEDGYYNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHK 106

[Close]

BLAST of HG10006330 vs. NCBI nr
Match: XP_038889661.1 (protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 6.4e-33
Identity = 86/107 (80.37%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MERGRKRRRLEEEEEDDEE-----KLFFALIQNTKAIRDRMKSKDQSTEEEKSKGVWNPK 60
           MERGRKRR+LEEEEE+D++     KL FALIQN KA+R RMKSK +S EEEKSKGVWNPK
Sbjct: 1   MERGRKRRKLEEEEEEDDDEEGEMKLVFALIQNIKAMRGRMKSK-ESPEEEKSKGVWNPK 60

Query: 61  FQPEDFIEDGNYNNKSNITLQLLAASSSTTKQSNPKKEQQEQEHKHK 103
           FQPEDFIEDG YNNKSNITLQL AASSSTTK SNPKKEQQEQ+ KHK
Sbjct: 61  FQPEDFIEDGYYNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHK 106

[Close]

BLAST of HG10006330 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_021295 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 7.3e-29
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MERGRKRRRLEEEEEDDEE---KLFFALIQNTKAIRDRMKSKDQSTEEEKSKGVWNPKFQ 60
           ME GRKRR+L+EEEE++E+   +LF+ALIQNTKA+RD MK   + TEEEKSKGVWNPKFQ
Sbjct: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60

Query: 61  PEDF-IEDG-NYNNKSN-ITLQLLAASSSTTKQSNPKKEQQEQEHKHKVGKGKMGLDLNL 117
           PEDF  EDG NYNNKSN I LQL AASSSTTKQ N KK+Q+E +H +KV + K GLDLNL
Sbjct: 61  PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKH-YKVVEVKKGLDLNL 120

[Close]

BLAST of HG10006330 vs. NCBI nr
Match: KAG6599168.1 (hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.0 bits (310), Expect = 8.4e-25
Identity = 78/140 (55.71%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 1   MERGRKRRRLE--EEEEDDEE-------------KLFFALIQNTKAIRDRMKSKDQSTEE 60
           ME GRKRR+L+  EE++DDEE             KLFFALIQNTKA+RD++KSK+ + E+
Sbjct: 1   MEGGRKRRKLQNIEEDDDDEEEDEDEDEDEEEKMKLFFALIQNTKAMRDKIKSKESAEED 60

Query: 61  EKSKGVWNPKFQPEDFIEDG--NYNNKSNITLQLLAASSSTTKQSNPKKEQQE------- 117
             +KGVWNPKFQPEDFIEDG   + +KS   ++L AASSS TKQSN K+E QE       
Sbjct: 61  NPTKGVWNPKFQPEDFIEDGFDTHKSKSKAAIELGAASSSATKQSNQKEEHQEHQEHQEH 120

[Close]

BLAST of HG10006330 vs. ExPASy TrEMBL
Match: A0A0A0LJ23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.5e-29
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MERGRKRRRLEEEEEDDEE---KLFFALIQNTKAIRDRMKSKDQSTEEEKSKGVWNPKFQ 60
           ME GRKRR+L+EEEE++E+   +LF+ALIQNTKA+RD MK   + TEEEKSKGVWNPKFQ
Sbjct: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60

Query: 61  PEDF-IEDG-NYNNKSN-ITLQLLAASSSTTKQSNPKKEQQEQEHKHKVGKGKMGLDLNL 117
           PEDF  EDG NYNNKSN I LQL AASSSTTKQ N KK+Q+E +H +KV + K GLDLNL
Sbjct: 61  PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKH-YKVVEVKKGLDLNL 120

[Close]

BLAST of HG10006330 vs. ExPASy TrEMBL
Match: A0A6J1DQG7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia OX=3673 GN=LOC111023284 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.3e-19
Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MERGRKRRRL---------EEEEEDDEEKLFFALIQNTKAIRDRMKSKDQSTEEEKSKGV 60
           ME  R++R+L         E+EEE+++ KLFFALIQNTK+IRDR+KSK  + +++KSKGV
Sbjct: 1   MESVRRKRKLQDDEKEAQKEDEEEEEKMKLFFALIQNTKSIRDRVKSKQSAPQQDKSKGV 60

Query: 61  WNPKFQPEDFIEDGNYNNKSNITLQLLAASSSTTKQSNPKKEQQEQEHKHKVGKGKMGLD 117
           WNPKFQPEDFIED   + KSN T Q   A+SS+TKQ N  K+++E++ K KV +G   LD
Sbjct: 61  WNPKFQPEDFIED--CDKKSNPTPQF--AASSSTKQRN--KQEEEEQGKDKV-EGIEDLD 118

[Close]

BLAST of HG10006330 vs. ExPASy TrEMBL
Match: A0A4S4D4I8 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_028387 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 2   ERGRKRRRLEEEEEDDEEKL--FFALIQNTKAIRDR-MKSKDQSTEEEKSKG----VWNP 61
           +  RKR+   EEE+DDEEK+  FFALI++T+  R+R M   ++  EEEK KG     WNP
Sbjct: 36  KESRKRKMENEEEDDDEEKMQKFFALIRSTRDARERVMSGAEKLQEEEKKKGKPAEAWNP 95

Query: 62  KFQPEDFIEDGNYNNK------SNITLQLLAASSSTTKQSNPKKEQQEQEHKHKVGKGKM 117
            FQPEDF+E G   +K      +++ L L  A  S  ++   K+++QE+E  HK G    
Sbjct: 96  SFQPEDFMEGGGDQSKGPPPPQASLALTLAIAGPSKREEDEAKEQEQEEEEDHKGGDND- 155

[Close]

BLAST of HG10006330 vs. ExPASy TrEMBL
Match: A0A4V3WPK6 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_027004 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.7e-11
Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 5   RKRRRLEEEEEDDEEKL--FFALIQNTKAIRDR-MKSKDQSTEEEKSKG----VWNPKFQ 64
           RKR+   EEE+DDEEK+  FFALI++T+  R R M   D+  EEEK+KG     WNP FQ
Sbjct: 6   RKRKMENEEEDDDEEKMQKFFALIRSTRDARKRVMSGADKLQEEEKTKGKPAEAWNPSFQ 65

Query: 65  PEDFIEDGNYNNKS-----NITLQLLAASSSTTKQSNPKKEQQEQEHKHKVGKGKMGLDL 117
           PEDF+E G   +K+       +L L  A +  +K+ +  KE QEQE  HK G    GLDL
Sbjct: 66  PEDFMEGGGDQSKAPPPPPQASLALALAVAGPSKREDEAKE-QEQEEDHKRGDSD-GLDL 125

[Close]

BLAST of HG10006330 vs. ExPASy TrEMBL
Match: A0A5C7GWM2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024772 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-10
Identity = 61/159 (38.36%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 5   RKRRRL----EEEEEDDEEKL--FFALIQNTKAIRDRMKS-------------------- 64
           RK+R++    EEEEE++EEK+  F+AL++NTK +RDR++S                    
Sbjct: 9   RKKRKMENEEEEEEENEEEKMEQFYALLRNTKDVRDRLRSSSTSSTGLHGSPIPSIPSME 68

Query: 65  -----------KDQSTEEEKSKGVWNPKFQPEDFIEDGNYNNKSNITLQL-------LAA 117
                      K +  EE+    VWNP FQPEDF+ED N   KSN T+ L       LAA
Sbjct: 69  INNNNNKQDQEKKKQLEEKALSAVWNPSFQPEDFMEDRNVIAKSN-TVNLGSTSSTQLAA 128

[Close]

BLAST of HG10006330 vs. TAIR 10
Match: AT1G09415.1 (NIM1-interacting 3 )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 1   MERGRKRRRLEEEEEDDEEKL--FFALIQNTKAIRDRMKS---KDQSTEEEKSKGVWNPK 60
           M+R RKR ++ E+E+D+EEK+   + +++N + +R  + S   K +  EEE+++    P 
Sbjct: 1   MDRDRKRVKM-EKEDDEEEKMEKLYTVLKNAREMRKYVNSSMEKKRQEEEERARVRRFPS 60

Query: 61  FQPEDFIEDGNYNNKSNITLQLLAA--SSSTTKQSNPKKEQQEQEHKHKVGKGKMGLDLN 117
           FQPEDFI    + NK+       AA  SSS + + +  KE+QE    +      + LDLN
Sbjct: 61  FQPEDFI----FMNKAEANNIEKAANESSSASNEYDGSKEKQEGSETN------VCLDLN 112

The following BLAST results are available for this feature:

BLAST of HG10006330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889660.1	3.4e-34	80.73	protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida]	[more]
XP_038889662.1	6.4e-33	80.37	protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida]	[more]
XP_038889661.1	6.4e-33	80.37	protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida]	[more]
KGN61024.1	7.3e-29	70.49	hypothetical protein Csa_021295 [Cucumis sativus]	[more]
KAG6599168.1	8.4e-25	55.71	hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10006330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ23	3.5e-29	70.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1	[more]
A0A6J1DQG7	3.3e-19	56.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia...	[more]
A0A4S4D4I8	2.0e-11	43.75	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0283...	[more]
A0A4V3WPK6	9.7e-11	47.58	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0270...	[more]
A0A5C7GWM2	3.7e-10	38.36	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024772 PE=3 SV=1	[more]

BLAST of HG10006330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09415.1	1.7e-04	35.77	NIM1-interacting 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 13..113 e-value: 2.2E-17 score: 63.7
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 5..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..53
None	No IPR available	PANTHER	PTHR33669:SF4	PROTEIN NIM1-INTERACTING 3	coord: 5..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006330.1	HG10006330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus