HG10006292 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006292
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	F-box protein
Location	Chr07: 17044407 .. 17046216 (-)
RNA-Seq Expression	HG10006292
Synteny	HG10006292

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCGTCGTCGGAGTCATCATCATGGGCGGAGCTAACGCACGAGTGTCTAACCAACATCCTCTCTCGGCTAACCATCGAGCAGCGGTGGCGCGGTCCTATGCTTGTTTGCAAGCTCTGGCACCGCGCCGCCACCGACCCCTCTCTCTTCTCCCACTTCGATCTCGAACCCAGGTTCGAGTCGGTCCCCACCGAGTCCCCGGCCTGGTGGTCGCCGGAGTTCGAGACCAAAATCGATTCAATGCTCCGATCTGCCGTCCATTGGAGCCTTGGATCTCTTTTCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCGATTTCGTCGCTCAAGGGTAATTAAATTAATATTTTCTTTTCCCTTTAAATTTTAATTATGATTTAATTTTTTTTTCTTTTAATTGGGAAAAAAATGGAGCTTTATTGATTGATTAGGGTAAAAGATTTCATTTTCCCCATATTTTCTATTGAGCAATATGGGGATTGGATGAATGTGGAAATTCTAATTGGCTAGATATGTCCCTTATAGAAAGGATTTCTTGTTTTGGTAACATCATTTGCTTTATTCTCTTGGTTGATCTTTTTTTGTTAGTTGGATATGCAAAAGTTTGGTTATTGGTTGTTTCAATTCAATGAACAATTTTGGGTTTTAAGCAGCTTGTTTCGAATTTGGTTATGCTTACATAAGTGAGAATCTTTATAAAAATTTCACTATAATATATAAATTTAGTCCTCGTGGTTTTGAGAAAGTTAGAATTTAGTCCTTATAGTTTCATAAAACCTCGTAAATATTCCCTATGGTTTGATAAAGCTCTCAAAATACTCCCTACTATAAGAACGGTTTATGATGATTTTATCAAACCATACGGACTAAATTCTAATTATAAACCATAAGGACCAAATTTCAATAAGTTGATCCACTGTAGATCATTCTAGTTGCAAAAAGAGAATTTCTAAAGGTTCGTTTAGATTGATTTTTAAATTGCTCAAAAAATGTTTTTTAAGAGGAAAAAAAAAGGTATTTTTAAGCACTTAGTCAATCTAGACGTACCCTAAATATCTATAGTTGATGAGGTCACGAGTTTGGGGTTTGGAACCAGCTACAGAATCAAGCATTGAGATTAGCTGAGATGTGAAAGCTGGCATAGACAATAGGGATTATCAAAAGGGGGAAAAGGTAATCAAATAATTGGTTGGCTAAGATTGATGGTCTTCAACTTATTCACATTTTAGGTGCCCAAACCTTGAGGTTCTTTCCATCAAGAACTGCCCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCGGGAAGTAGATATCAGCTACTGTCACGAAATCTCGAACATATCATTGGCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAATTTTTTTAACTATCTAGATCCTTCCCAACACAAGGGAATTGTCCCTGACAGTTATCTAAATGCCTGTCCTCAAGATGTGGATTCAGAAGCTGCAGCTATTGCAAAATTTATGCCTAACTTGGAGCACCTTGAACTCGGTTTCTCTAAACTATCTGCTAAAGCTCTAAGTTTGATCTGTGAAGGATGTCCTAACCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGCCGTGATATAGCGAATGCTACATCAAATCTGGACAATTTGGAGATTAGGAAACCGAATTTCTATATTCCGAGGTCGGTCTTTCACACGGAGAGGTATGGCCATTGGAGGTTGTATGATGAGAGATTCCAAACTGATATTTTCAGAATTTGA

mRNA sequence

ATGGCAGAGCCGTCGTCGGAGTCATCATCATGGGCGGAGCTAACGCACGAGTGTCTAACCAACATCCTCTCTCGGCTAACCATCGAGCAGCGGTGGCGCGGTCCTATGCTTGTTTGCAAGCTCTGGCACCGCGCCGCCACCGACCCCTCTCTCTTCTCCCACTTCGATCTCGAACCCAGGTTCGAGTCGGTCCCCACCGAGTCCCCGGCCTGGTGGTCGCCGGAGTTCGAGACCAAAATCGATTCAATGCTCCGATCTGCCGTCCATTGGAGCCTTGGATCTCTTTTCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCGATTTCGTCGCTCAAGGGTGCCCAAACCTTGAGGTTCTTTCCATCAAGAACTGCCCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCGGGAAGTAGATATCAGCTACTGTCACGAAATCTCGAACATATCATTGGCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAATTTTTTTAACTATCTAGATCCTTCCCAACACAAGGGAATTGTCCCTGACAGTTATCTAAATGCCTGTCCTCAAGATGTGGATTCAGAAGCTGCAGCTATTGCAAAATTTATGCCTAACTTGGAGCACCTTGAACTCGGTTTCTCTAAACTATCTGCTAAAGCTCTAAGTTTGATCTGTGAAGGATGTCCTAACCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGCCGTGATATAGCGAATGCTACATCAAATCTGGACAATTTGGAGATTAGGAAACCGAATTTCTATATTCCGAGGTCGGTCTTTCACACGGAGAGGTATGGCCATTGGAGGTTGTATGATGAGAGATTCCAAACTGATATTTTCAGAATTTGA

Coding sequence (CDS)

ATGGCAGAGCCGTCGTCGGAGTCATCATCATGGGCGGAGCTAACGCACGAGTGTCTAACCAACATCCTCTCTCGGCTAACCATCGAGCAGCGGTGGCGCGGTCCTATGCTTGTTTGCAAGCTCTGGCACCGCGCCGCCACCGACCCCTCTCTCTTCTCCCACTTCGATCTCGAACCCAGGTTCGAGTCGGTCCCCACCGAGTCCCCGGCCTGGTGGTCGCCGGAGTTCGAGACCAAAATCGATTCAATGCTCCGATCTGCCGTCCATTGGAGCCTTGGATCTCTTTTCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCGATTTCGTCGCTCAAGGGTGCCCAAACCTTGAGGTTCTTTCCATCAAGAACTGCCCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCGGGAAGTAGATATCAGCTACTGTCACGAAATCTCGAACATATCATTGGCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAATTTTTTTAACTATCTAGATCCTTCCCAACACAAGGGAATTGTCCCTGACAGTTATCTAAATGCCTGTCCTCAAGATGTGGATTCAGAAGCTGCAGCTATTGCAAAATTTATGCCTAACTTGGAGCACCTTGAACTCGGTTTCTCTAAACTATCTGCTAAAGCTCTAAGTTTGATCTGTGAAGGATGTCCTAACCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGCCGTGATATAGCGAATGCTACATCAAATCTGGACAATTTGGAGATTAGGAAACCGAATTTCTATATTCCGAGGTCGGTCTTTCACACGGAGAGGTATGGCCATTGGAGGTTGTATGATGAGAGATTCCAAACTGATATTTTCAGAATTTGA

Protein sequence

MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEVLSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI

Homology

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BLAST of HG10006292 vs. NCBI nr
Match: XP_038890479.1 (F-box protein SKIP1 [Benincasa hispida])

HSP 1 Score: 609.0 bits (1569), Expect = 2.2e-170
Identity = 289/303 (95.38%), Postives = 297/303 (98.02%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEP SESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR
Sbjct: 1   MAEPLSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           FES PTESPAWWSPEFETKIDSMLRSAVHWSLGSL LIRIRHCSDSSLDFVAQGCPNLEV
Sbjct: 61  FESTPTESPAWWSPEFETKIDSMLRSAVHWSLGSLSLIRIRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKT+KRNFFN 
Sbjct: 121 LSIKSCANVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTIKRNFFNN 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQHKGIVPD+YLN+CPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCP 
Sbjct: 181 LDPSQHKGIVPDNYLNSCPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPK 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LK+LDLFGCVNLTSRDIANATS+++NLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI
Sbjct: 241 LKFLDLFGCVNLTSRDIANATSSMENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 303

[Close]

BLAST of HG10006292 vs. NCBI nr
Match: XP_008452697.1 (PREDICTED: F-box protein SKIP1 [Cucumis melo] >TYJ96405.1 F-box protein SKIP1 [Cucumis melo var. makuwa])

HSP 1 Score: 584.7 bits (1506), Expect = 4.5e-163
Identity = 279/303 (92.08%), Postives = 289/303 (95.38%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCK W RAA DPSLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           FES PTESPAWW PEFETKIDSMLRSAV WSLGSL +IR+RHCSDSSLDFVAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQHKGIVPD+YL+ACPQDVDSEAAAIAKFM NLEHLELGFSKLSAKAL+ ICEGCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDIANATS+L+NLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 303

[Close]

BLAST of HG10006292 vs. NCBI nr
Match: KAA0056113.1 (F-box protein SKIP1 [Cucumis melo var. makuwa])

HSP 1 Score: 582.8 bits (1501), Expect = 1.7e-162
Identity = 278/303 (91.75%), Postives = 288/303 (95.05%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCK W  AA DPSLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFHAARDPSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           FES PTESPAWW PEFETKIDSMLRSAV WSLGSL +IR+RHCSDSSLDFVAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQHKGIVPD+YL+ACPQDVDSEAAAIAKFM NLEHLELGFSKLSAKAL+ ICEGCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDIANATS+L+NLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 303

[Close]

BLAST of HG10006292 vs. NCBI nr
Match: XP_022946543.1 (F-box protein SKIP1-like [Cucurbita moschata])

HSP 1 Score: 567.0 bits (1460), Expect = 9.8e-158
Identity = 272/303 (89.77%), Postives = 282/303 (93.07%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCKLW RAATD SLFSHFDLEPR
Sbjct: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           F+S PTESPAWWSP+FE KIDSMLRSAV WSLGSL LIRIRHCSDSSL  VAQGCPNLEV
Sbjct: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTDRSMAKIALGCQKL+EVDISYCHEISN+SL+LIGKHCPNIKTLKRNFFN 
Sbjct: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQ KGIVPDSYLNACPQDVDSEA AIAKFMPNLEHL+L FSKLSAKAL+LIC+GCPN
Sbjct: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDI NATSNL+NLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIVNATSNLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 298

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 298

[Close]

BLAST of HG10006292 vs. NCBI nr
Match: KAG6599142.1 (F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030085.1 F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 565.1 bits (1455), Expect = 3.7e-157
Identity = 271/303 (89.44%), Postives = 282/303 (93.07%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCKLW RAATD SLFSHFDLEPR
Sbjct: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           F+S PTESPAWWSP+FE KIDSMLRSAV WSLGSL LIRIRHCSDSSL  VAQGCPNLEV
Sbjct: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTDRSMAKIALGCQKL+EVDISYCHEISN+SL+LIGKHCPNIKTLKRNFFN 
Sbjct: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQ KGIVPDSYLNACPQDVDSEA AIAKFMPNLEHL+L FSKLSAKAL+LIC+GCPN
Sbjct: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDI NATS+L+NLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 298

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 298

[Close]

BLAST of HG10006292 vs. ExPASy Swiss-Prot
Match: Q9FDX1 (F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 7.6e-97
Identity = 176/300 (58.67%), Postives = 216/300 (72.00%), Query Frame = 0


Query: 7   ESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPT 66
           + S W  L  E L NI+SRLTI++ W GPM V K W     DP L+S FDLEP F+S P 
Sbjct: 4   DGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP- 63

Query: 67  ESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEVLSIKNC 126
           ES   WSPEFE K+D MLRS V WS G L  IR+RHCSD +L + A  CPNL+VL+I++ 
Sbjct: 64  ESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSS 123

Query: 127 PNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQH 186
           PNVTD SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  ++   S+H
Sbjct: 124 PNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRH 183

Query: 187 KGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYLDL 246
            G VP  YL+ACPQD D+EA AI K M NLEHLE+ FS+LS K L+ ICEGCP L+YLDL
Sbjct: 184 IGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDL 243

Query: 247 FGCVNLTSRDIANATSNLDNL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 304
           FGCV+L+SRDI +  S L  L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 244 FGCVHLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of HG10006292 vs. ExPASy Swiss-Prot
Match: Q9M096 (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.5e-76
Identity = 150/281 (53.38%), Postives = 187/281 (66.55%), Query Frame = 0


Query: 11  WAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPTESPA 70
           W+ELT ECL +I SRL+ EQRW GPMLV K W  A  DP+L + FDLE RF S P ES  
Sbjct: 20  WSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ESIN 79

Query: 71  WWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEVLSIKNCPNVT 130
           WW+PEFE K+DS LRS V  S G L  IRIRHC++ SL + A+ CPNLEVL IKNCPNVT
Sbjct: 80  WWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPNVT 139

Query: 131 DRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQHKGIV 190
           D SM KIA+ C  LRE+DISY + I++ SL  +G+ C N+K LKRN    L PS    + 
Sbjct: 140 DASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVA 199

Query: 191 PDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYLDLFGCV 250
           P  YL   P+  + EA  I K+M  L+HLE+ +S L+A+ L  +C+GC NL+Y+DL GC+
Sbjct: 200 PLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCI 259

Query: 251 NLTSRDIANATSNLDNL-EIRKPNFYIPRSVFHTERYGHWR 291
           +LT  DI   TS L NL EI KP+F  P +V    R G+ R
Sbjct: 260 SLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of HG10006292 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.4e-27
Identity = 82/244 (33.61%), Postives = 121/244 (49.59%), Query Frame = 0


Query: 10  SWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPTESP 69
           +WAEL  +  ++IL RL   +  +    VCK WHR   DPS++   D++ R +       
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRA----- 239

Query: 70  AWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSL-DFVAQGCPNLEVLSIKNCPN 129
                 F+  ++SM R AV  S G L  I I +   + L  ++A    NL+ L +  C  
Sbjct: 240 -----AFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFP 299

Query: 130 VTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQHKG 189
           +TD  +AK       L  +++SYC   S  SL  IG+ CPN+KTLK N            
Sbjct: 300 ITDEGVAKAVSKVPLLEYLEVSYC-LFSGESLRDIGRSCPNLKTLKLN------------ 359

Query: 190 IVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYLDLFG 249
             P+   +      D  A AIA+ MP L HL+L  + L+ K L+ I +GCP+L++LDL  
Sbjct: 360 RAPEIMFS--NSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQ 398

Query: 250 CVNL 253
           C N+
Sbjct: 420 CFNI 398

[Close]

BLAST of HG10006292 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-26
Identity = 84/255 (32.94%), Postives = 121/255 (47.45%), Query Frame = 0


Query: 2   AEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRF 61
           A  + E  +WAEL  E  ++IL RL   +  +    VCK W R   DPS++   D+  + 
Sbjct: 12  AMKNGEYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKE 71

Query: 62  ESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSS-LDFVAQGCPNLEV 121
             V        S E    I+ +   AV  S G L  I I +  ++S L+++A    NL  
Sbjct: 72  NLVN-------SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRR 131

Query: 122 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 181
           L + +C  V  R + + A+    L E+DI+Y   I    L ++G+ CPN++TLK N    
Sbjct: 132 LGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN---- 191

Query: 182 LDPSQHKGIVPDSYLNACPQDV---DSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEG 241
                            C  DV   D  A AIA+ MP L HL+L  + LS   L+ I EG
Sbjct: 192 -----------------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEG 238

Query: 242 CPNLKYLDLFGCVNL 253
           CP+LK L L  C+N+
Sbjct: 252 CPHLKNLGLHQCLNI 238

[Close]

BLAST of HG10006292 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-21
Identity = 78/248 (31.45%), Postives = 116/248 (46.77%), Query Frame = 0


Query: 7   ESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPT 66
           ES++W EL  E  + IL RL   +       VC+ W R   DPS++   D+    +    
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD---- 74

Query: 67  ESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSD-SSLDFVAQGCPNLEVLSIKN 126
                   + +  ++ M R AV  S G L  I I +      L+++A    NL  L +  
Sbjct: 75  ------LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIR 134

Query: 127 CPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQ 186
           C  +TD    + A+    L E+++SYC   S  SL ++G+ C N+KTLK           
Sbjct: 135 CSQITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK----------- 194

Query: 187 HKGIVPDSYLNACPQ-DVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYL 246
                    LN  PQ + D +A AIA+ MP L HL+L  + LS   L+ I + C NL++L
Sbjct: 195 ---------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHL 230

Query: 247 DLFGCVNL 253
           DL  C N+
Sbjct: 255 DLRRCFNV 230

[Close]

BLAST of HG10006292 vs. ExPASy TrEMBL
Match: A0A5D3BD72 (F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00320 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 2.2e-163
Identity = 279/303 (92.08%), Postives = 289/303 (95.38%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCK W RAA DPSLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           FES PTESPAWW PEFETKIDSMLRSAV WSLGSL +IR+RHCSDSSLDFVAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQHKGIVPD+YL+ACPQDVDSEAAAIAKFM NLEHLELGFSKLSAKAL+ ICEGCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDIANATS+L+NLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 303

[Close]

BLAST of HG10006292 vs. ExPASy TrEMBL
Match: A0A1S3BUE6 (F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 2.2e-163
Identity = 279/303 (92.08%), Postives = 289/303 (95.38%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCK W RAA DPSLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           FES PTESPAWW PEFETKIDSMLRSAV WSLGSL +IR+RHCSDSSLDFVAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQHKGIVPD+YL+ACPQDVDSEAAAIAKFM NLEHLELGFSKLSAKAL+ ICEGCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDIANATS+L+NLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 303

[Close]

BLAST of HG10006292 vs. ExPASy TrEMBL
Match: A0A5A7UJH9 (F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold323G00770 PE=4 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 8.3e-163
Identity = 278/303 (91.75%), Postives = 288/303 (95.05%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCK W  AA DPSLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFHAARDPSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           FES PTESPAWW PEFETKIDSMLRSAV WSLGSL +IR+RHCSDSSLDFVAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQHKGIVPD+YL+ACPQDVDSEAAAIAKFM NLEHLELGFSKLSAKAL+ ICEGCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDIANATS+L+NLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 303

[Close]

BLAST of HG10006292 vs. ExPASy TrEMBL
Match: A0A6J1G461 (F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111450576 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.7e-158
Identity = 272/303 (89.77%), Postives = 282/303 (93.07%), Query Frame = 0


Query: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCKLW RAATD SLFSHFDLEPR
Sbjct: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60

Query: 61  FESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEV 120
           F+S PTESPAWWSP+FE KIDSMLRSAV WSLGSL LIRIRHCSDSSL  VAQGCPNLEV
Sbjct: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120

Query: 121 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 180
           LSIK+C NVTDRSMAKIALGCQKL+EVDISYCHEISN+SL+LIGKHCPNIKTLKRNFFN 
Sbjct: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180

Query: 181 LDPSQHKGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPN 240
           LDPSQ KGIVPDSYLNACPQDVDSEA AIAKFMPNLEHL+L FSKLSAKAL+LIC+GCPN
Sbjct: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300
           LKYLDLFGCVNLTSRDI NATSNL+NLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIVNATSNLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 298

Query: 301 FRI 304
           FRI
Sbjct: 301 FRI 298

[Close]

BLAST of HG10006292 vs. ExPASy TrEMBL
Match: A0A6J1KKL1 (F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111494002 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.1e-157
Identity = 267/295 (90.51%), Postives = 280/295 (94.92%), Query Frame = 0


Query: 9   SSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPTES 68
           +SWAELT ECLTNI SRLTIEQRWRGPMLVCKLW RAATD SLFSHFDL+PRF+S PTES
Sbjct: 4   ASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTES 63

Query: 69  PAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEVLSIKNCPN 128
           PAWWSP+FETKIDSMLRSAV WSLGSL LIRIRHCSDSSL  VAQGCPNLEVLSIK+C N
Sbjct: 64  PAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCAN 123

Query: 129 VTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQHKG 188
           VTDRSMAKIALGCQKL+EVDISYCHEISN+SL+LIGKHCPNIKTLKRNFFN LDPSQ KG
Sbjct: 124 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 183

Query: 189 IVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYLDLFG 248
           IVPDSYLNACPQDVDSEA AIAKFMPNLEHLEL FSK+SAKAL+LIC+GCPNLKYLDLFG
Sbjct: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLFG 243

Query: 249 CVNLTSRDIANATSNLDNLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 304
           CVNLTSRDI NATS+L+NLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 244 CVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of HG10006292 vs. TAIR 10
Match: AT5G57900.1 (SKP1 interacting partner 1 )

HSP 1 Score: 355.1 bits (910), Expect = 5.4e-98
Identity = 176/300 (58.67%), Postives = 216/300 (72.00%), Query Frame = 0


Query: 7   ESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPT 66
           + S W  L  E L NI+SRLTI++ W GPM V K W     DP L+S FDLEP F+S P 
Sbjct: 4   DGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP- 63

Query: 67  ESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEVLSIKNC 126
           ES   WSPEFE K+D MLRS V WS G L  IR+RHCSD +L + A  CPNL+VL+I++ 
Sbjct: 64  ESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSS 123

Query: 127 PNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQH 186
           PNVTD SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  ++   S+H
Sbjct: 124 PNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRH 183

Query: 187 KGIVPDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYLDL 246
            G VP  YL+ACPQD D+EA AI K M NLEHLE+ FS+LS K L+ ICEGCP L+YLDL
Sbjct: 184 IGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDL 243

Query: 247 FGCVNLTSRDIANATSNLDNL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 304
           FGCV+L+SRDI +  S L  L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 244 FGCVHLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of HG10006292 vs. TAIR 10
Match: AT4G30640.1 (RNI-like superfamily protein )

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-77
Identity = 150/281 (53.38%), Postives = 187/281 (66.55%), Query Frame = 0


Query: 11  WAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPTESPA 70
           W+ELT ECL +I SRL+ EQRW GPMLV K W  A  DP+L + FDLE RF S P ES  
Sbjct: 20  WSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ESIN 79

Query: 71  WWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSSLDFVAQGCPNLEVLSIKNCPNVT 130
           WW+PEFE K+DS LRS V  S G L  IRIRHC++ SL + A+ CPNLEVL IKNCPNVT
Sbjct: 80  WWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPNVT 139

Query: 131 DRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQHKGIV 190
           D SM KIA+ C  LRE+DISY + I++ SL  +G+ C N+K LKRN    L PS    + 
Sbjct: 140 DASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVA 199

Query: 191 PDSYLNACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYLDLFGCV 250
           P  YL   P+  + EA  I K+M  L+HLE+ +S L+A+ L  +C+GC NL+Y+DL GC+
Sbjct: 200 PLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCI 259

Query: 251 NLTSRDIANATSNLDNL-EIRKPNFYIPRSVFHTERYGHWR 291
           +LT  DI   TS L NL EI KP+F  P +V    R G+ R
Sbjct: 260 SLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of HG10006292 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 2.9e-27
Identity = 84/255 (32.94%), Postives = 121/255 (47.45%), Query Frame = 0


Query: 2   AEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRF 61
           A  + E  +WAEL  E  ++IL RL   +  +    VCK W R   DPS++   D+  + 
Sbjct: 12  AMKNGEYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKE 71

Query: 62  ESVPTESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSDSS-LDFVAQGCPNLEV 121
             V        S E    I+ +   AV  S G L  I I +  ++S L+++A    NL  
Sbjct: 72  NLVN-------SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRR 131

Query: 122 LSIKNCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNY 181
           L + +C  V  R + + A+    L E+DI+Y   I    L ++G+ CPN++TLK N    
Sbjct: 132 LGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN---- 191

Query: 182 LDPSQHKGIVPDSYLNACPQDV---DSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEG 241
                            C  DV   D  A AIA+ MP L HL+L  + LS   L+ I EG
Sbjct: 192 -----------------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEG 238

Query: 242 CPNLKYLDLFGCVNL 253
           CP+LK L L  C+N+
Sbjct: 252 CPHLKNLGLHQCLNI 238

[Close]

BLAST of HG10006292 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-22
Identity = 78/248 (31.45%), Postives = 116/248 (46.77%), Query Frame = 0


Query: 7   ESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPT 66
           ES++W EL  E  + IL RL   +       VC+ W R   DPS++   D+    +    
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD---- 74

Query: 67  ESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRIRHCSD-SSLDFVAQGCPNLEVLSIKN 126
                   + +  ++ M R AV  S G L  I I +      L+++A    NL  L +  
Sbjct: 75  ------LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIR 134

Query: 127 CPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDPSQ 186
           C  +TD    + A+    L E+++SYC   S  SL ++G+ C N+KTLK           
Sbjct: 135 CSQITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK----------- 194

Query: 187 HKGIVPDSYLNACPQ-DVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNLKYL 246
                    LN  PQ + D +A AIA+ MP L HL+L  + LS   L+ I + C NL++L
Sbjct: 195 ---------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHL 230

Query: 247 DLFGCVNL 253
           DL  C N+
Sbjct: 255 DLRRCFNV 230

[Close]

BLAST of HG10006292 vs. TAIR 10
Match: AT4G05470.1 (RNI-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-21
Identity = 77/252 (30.56%), Postives = 117/252 (46.43%), Query Frame = 0


Query: 7   ESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPRFESVPT 66
           E  +W +L  E  T+IL RL++         VCK W R   DPS+         +  + T
Sbjct: 42  ERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSM---------WRKINT 101

Query: 67  ESPAWWSPEFETKIDSMLRSAVHWSLGSLFLIRI--RHCSDSSLDFVAQGCPNLEVLSIK 126
                ++ +F     SM R  V  S G L  I +     SDS L ++     NL  L + 
Sbjct: 102 RDCLMYNFDFV----SMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITD--RNLRSLGLG 161

Query: 127 NC-PNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTLKRNFFNYLDP 186
            C P VT   +         L  ++++  H    + L  IG  CP +KTLK N    L P
Sbjct: 162 MCFPRVTKLGVVNAIAKIPLLETLEVT--HSCIKLDLKAIGHACPQLKTLKLNSLGRLWP 221

Query: 187 SQHKGIVPDSYL--NACPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPNL 246
           +  K    DS +  +  P + D +A AIA+ MP L HL+L  ++L+   L+ I +GCP+L
Sbjct: 222 ASDK---YDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHL 273

Query: 247 KYLDLFGCVNLT 254
           ++LD+  C  ++
Sbjct: 282 EHLDVRKCFRIS 273

The following BLAST results are available for this feature:

BLAST of HG10006292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890479.1	2.2e-170	95.38	F-box protein SKIP1 [Benincasa hispida]	[more]
XP_008452697.1	4.5e-163	92.08	PREDICTED: F-box protein SKIP1 [Cucumis melo] >TYJ96405.1 F-box protein SKIP1 [C...	[more]
KAA0056113.1	1.7e-162	91.75	F-box protein SKIP1 [Cucumis melo var. makuwa]	[more]
XP_022946543.1	9.8e-158	89.77	F-box protein SKIP1-like [Cucurbita moschata]	[more]
KAG6599142.1	3.7e-157	89.44	F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030085...	[more]

BLAST of HG10006292 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDX1	7.6e-97	58.67	F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1	[more]
Q9M096	1.5e-76	53.38	Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE...	[more]
Q9S9V9	6.4e-27	33.61	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9S9V8	4.1e-26	32.94	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
Q9M0U9	4.0e-21	31.45	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]

BLAST of HG10006292 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BD72	2.2e-163	92.08	F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G...	[more]
A0A1S3BUE6	2.2e-163	92.08	F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1	[more]
A0A5A7UJH9	8.3e-163	91.75	F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold323G...	[more]
A0A6J1G461	4.7e-158	89.77	F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111450576 PE=4 SV=1	[more]
A0A6J1KKL1	3.1e-157	90.51	F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111494002 PE=4 SV=1	[more]

BLAST of HG10006292 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57900.1	5.4e-98	58.67	SKP1 interacting partner 1	[more]
AT4G30640.1	1.1e-77	53.38	RNI-like superfamily protein	[more]
AT4G05497.1	2.9e-27	32.94	RNI-like superfamily protein	[more]
AT4G05460.1	2.8e-22	31.45	RNI-like superfamily protein	[more]
AT4G05470.1	1.4e-21	30.56	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 250..270
None	No IPR available	GENE3D	1.20.1280.50		coord: 10..51 e-value: 2.7E-9 score: 38.7
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 10..303
None	No IPR available	PANTHER	PTHR16134:SF29	F-BOX PROTEIN SKIP1	coord: 10..303
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 89..267
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 141..166 e-value: 0.0038 score: 26.5 coord: 238..263 e-value: 0.018 score: 24.2 coord: 213..237 e-value: 400.0 score: 2.1 coord: 115..140 e-value: 1.9E-5 score: 34.1
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 141..157 e-value: 1.3 score: 9.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 16..56 e-value: 7.4E-6 score: 25.8
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 84..273 e-value: 1.5E-34 score: 121.2
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006292.1	HG10006292.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding