HG10006217 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006217
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA repair protein XRCC3 homolog
Location	Chr07: 15953997 .. 15954878 (+)
RNA-Seq Expression	HG10006217
Synteny	HG10006217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCACCTGCAGCTCCCTCACTGAAATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCCCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGTCTCAACGCCTCATCTCTCTACATCCACACCGAGTTCCCTTTCCCTTTTCGACGTCTTCAACAGCTTTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCTAATCCCTCCAATCACATCTTTGTCGAACCCGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTCCTTGAAAATCGAAATTCCCAATTGCCCATCAGGCTTATTGTGATTGATTCCATTGCAGCGTTGTTTCGCTCTGATTTCAACAACACCCCATCTGATCTCAAGCGGAGATCTTCTCTGTTTTTCAAGATTTCTGGAAAGTTGAAGTTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGGTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGGACGACGTGTTTGCCCGGCGCTGGGGCTCGCGTGGGCTAATTGTGTAAATACAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTTGGGGAAGGTGATGGGATGATGAATGGAAGTGAATTAGTACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAATAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGA

mRNA sequence

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCACCTGCAGCTCCCTCACTGAAATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCCCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGTCTCAACGCCTCATCTCTCTACATCCACACCGAGTTCCCTTTCCCTTTTCGACGTCTTCAACAGCTTTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCTAATCCCTCCAATCACATCTTTGTCGAACCCGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTCCTTGAAAATCGAAATTCCCAATTGCCCATCAGGCTTATTGTGATTGATTCCATTGCAGCGTTGTTTCGCTCTGATTTCAACAACACCCCATCTGATCTCAAGCGGAGATCTTCTCTGTTTTTCAAGATTTCTGGAAAGTTGAAGTTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGGTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGGACGACGTGTTTGCCCGGCGCTGGGGCTCGCGTGGGCTAATTGTGTAAATACAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTTGGGGAAGGTGATGGGATGATGAATGGAAGTGAATTAGTACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAATAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCACCTGCAGCTCCCTCACTGAAATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCCCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGTCTCAACGCCTCATCTCTCTACATCCACACCGAGTTCCCTTTCCCTTTTCGACGTCTTCAACAGCTTTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCTAATCCCTCCAATCACATCTTTGTCGAACCCGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTCCTTGAAAATCGAAATTCCCAATTGCCCATCAGGCTTATTGTGATTGATTCCATTGCAGCGTTGTTTCGCTCTGATTTCAACAACACCCCATCTGATCTCAAGCGGAGATCTTCTCTGTTTTTCAAGATTTCTGGAAAGTTGAAGTTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGGTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGGACGACGTGTTTGCCCGGCGCTGGGGCTCGCGTGGGCTAATTGTGTAAATACAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTTGGGGAAGGTGATGGGATGATGAATGGAAGTGAATTAGTACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAATAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Protein sequence

MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDIMPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRNEEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ

Homology

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BLAST of HG10006217 vs. NCBI nr
Match: XP_004150781.1 (DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical protein Csa_021163 [Cucumis sativus])

HSP 1 Score: 568.2 bits (1463), Expect = 4.2e-158
Identity = 285/294 (96.94%), Postives = 289/294 (98.30%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGV CSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIES LENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLN LRIGNLKFLCSS RRVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQ-RRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294
           EEVVGEG+GMMNGSELVQ RRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of HG10006217 vs. NCBI nr
Match: XP_038890688.1 (DNA repair protein XRCC3 homolog [Benincasa hispida])

HSP 1 Score: 561.2 bits (1445), Expect = 5.2e-156
Identity = 279/293 (95.22%), Postives = 286/293 (97.61%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRS GGGV CSSLTEIVAESGCGKTQLCLQLSL AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSAGGGVACSSLTEIVAESGCGKTQLCLQLSLYAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIESFL+N NSQLPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLKNSNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSL VVLTNQVVDL+GSSDGLN LRIGNLKFL SSGR+VCPALGLAWANCVNTRLFLSRN
Sbjct: 181 YSLGVVLTNQVVDLIGSSDGLNALRIGNLKFLSSSGRQVCPALGLAWANCVNTRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294
           EE+VGEG+GMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ
Sbjct: 241 EEIVGEGEGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 293

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BLAST of HG10006217 vs. NCBI nr
Match: XP_008451720.1 (PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo] >KAA0055575.1 DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 558.5 bits (1438), Expect = 3.4e-155
Identity = 279/293 (95.22%), Postives = 286/293 (97.61%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+ CSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIES LENRNS LPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLN LRIGNLKFLCSS RRVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           EEVVGEG+GM+NGSELVQRR TRRWLHVVFAPHLPKSSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of HG10006217 vs. NCBI nr
Match: TYK01347.1 (DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 555.8 bits (1431), Expect = 2.2e-154
Identity = 277/293 (94.54%), Postives = 286/293 (97.61%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+ CSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLS+AFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSEAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIES LENRNS LPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLN LRIGNLKFLCSS RRVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           EEVVGEG+GM+NGSELVQRR TRRWLHVVFAPHLP+SSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPESSCEYVINREGVVGVES 293

[Close]

BLAST of HG10006217 vs. NCBI nr
Match: KAG7020901.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 536.2 bits (1380), Expect = 1.8e-148
Identity = 265/293 (90.44%), Postives = 278/293 (94.88%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGV C+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPS+HIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIESFL NR+S LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+N LRIGNLK LCSSGRRVCPALG+AWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294
           EEVVGEGDG++N  EL QRRTRRWLHVVFAPHLPKSSCEYVINR+GVVGVESQ
Sbjct: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of HG10006217 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.4e-100
Identity = 181/297 (60.94%), Postives = 229/297 (77.10%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSNHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP +H+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++ P++LIV+DS+AALFRS+F+NTPSDLK+RSSLFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+GLRIGNL++L SSGRRV P+LGLAWANCVN+R F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           SR++   V    +   N S  V R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of HG10006217 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.7e-35
Identity = 104/298 (34.90%), Postives = 151/298 (50.67%), Query Frame = 0


Query: 7   LHLLQTT-------QKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQ 66
           LHL Q         Q+ + GCP++D+ +GGG+    +T +   S  GKTQL LQL L  Q
Sbjct: 66  LHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPFRRLQQL---SQAFSSSYP----QFSNPSNHIFVEPVH 126
            P   GGL A ++YI TE  FP +RL QL    +   +  P    +    SNHIF+E   
Sbjct: 126 FPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAA 185

Query: 127 SAHQLFDIMPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISG 186
               L + + K    L +R      RL+V+DSIAA FR +F+   S +  R+ L   +  
Sbjct: 186 DVDTLLECVSKKVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGA 245

Query: 187 KLKLLAKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVN 246
            L+ L+  +   V+  NQV D++     ++       + L +S  R+ PALG+ WAN + 
Sbjct: 246 TLRRLSSTFRSPVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWANQLL 305

Query: 247 TRLFLSRNEEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGV 291
            RL + R  E     D +  G   + R   R L V+FAPHLP SSC Y ++ EG+ G+
Sbjct: 306 MRLMVDRTHE-----DDVTTG---LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

[Close]

BLAST of HG10006217 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-32
Identity = 98/284 (34.51%), Postives = 140/284 (49.30%), Query Frame = 0


Query: 14  QKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLY 73
           Q+ + GCP++D  + GG+    +TE+   S  GKTQL LQL L  Q P  +GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLF-DIMPKIESFLENRN 133
           I TE  FP +RLQQL     +  P+         ++ +    Q+F + +  +++ LE  N
Sbjct: 140 ICTEDAFPHKRLQQL----MAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVN 199

Query: 134 SQLPI-------RLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKRYSLAV 193
            ++P+       RL+VIDS+AA FR +F++  S  + R      +   L+ L+  +   V
Sbjct: 200 KKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPV 259

Query: 194 VLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRNEEVVG 253
           +  NQV + M       G   G L F      RV PALG+ WAN +  RL   R  E   
Sbjct: 260 LCINQVTEAMEE----QGAAHGPLGFW---DERVSPALGITWANQLLVRLLADRLRE--- 319

Query: 254 EGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVG 290
                    E       R L V+ APHLP SSC Y I+ EGV G
Sbjct: 320 --------EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]

BLAST of HG10006217 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.9e-32
Identity = 100/302 (33.11%), Postives = 145/302 (48.01%), Query Frame = 0


Query: 7   LHLL-------QTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQ 66
           LHLL       +  Q+ + GCP++D  + GG+    +TE+   S  GKTQL LQL L  Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPFRRLQQL---SQAFSSSYPQFSNPSNHIFVEPVHSAHQ 126
           LP  +GGL A ++Y+ TE  FP RRLQQL    Q   +  P       H+ +  +   HQ
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVP------GHV-ISKIRFGHQ 185

Query: 127 LF-DIMPKIESFLENRNSQLPI-------RLIVIDSIAALFRSDFNNTPSDLKRRSSLFF 186
           +F +    +++ L+    ++P+       RL+VIDS+AA FR +F+   + L  R+    
Sbjct: 186 IFIEHAADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPFRCEFDG--AALALRAQRLL 245

Query: 187 KISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWA 246
            +  +L+ L+  +   V+  NQV + +   D            L +    + PALG+ WA
Sbjct: 246 ALGAELRRLSCAFRSPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWA 305

Query: 247 NCVNTRLFLSRNEEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVV 291
           N +  RL   R               E       R L VVFAPHLP SSC Y I  EGV 
Sbjct: 306 NQLLVRLLADRQRP-----------EEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVR 335

[Close]

BLAST of HG10006217 vs. ExPASy Swiss-Prot
Match: O15315 (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-28
Identity = 89/282 (31.56%), Postives = 141/282 (50.00%), Query Frame = 0


Query: 23  IDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPF 82
           +D ++ GGV C SLTEI    GCGKTQ C+ +S+ A LP + GGL  + +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSYPQFSNPSNHIFV--EPVHSAHQLF--DIMPKIESFLENRNSQLPIR 142
            RL ++++   S +P++ N    + +    VH   +L   +++ +IES LE       I+
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIES-LEEEIISKGIK 209

Query: 143 LIVIDSIAALFRSDFN-NTPSDLKRRSSLFFKISGKLKLLAKRYSLAVVLTNQV------ 202
           L+++DS+A++ R +F+     +LK R+    + +  LK LA+ +S+ V+LTNQ+      
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 -----VDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRNEEVVGE 262
                 DL+  +D L      +L    S    V  ALG  W++ VNTRL L   +     
Sbjct: 270 ALASQADLVSPADDL------SLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDS---- 329

Query: 263 GDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVV 289
                          RR + +  +P  P +S  Y I  EG+V
Sbjct: 330 --------------ERRQILIAKSPLAPFTSFVYTIKEEGLV 343

[Close]

BLAST of HG10006217 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.0e-158
Identity = 285/294 (96.94%), Postives = 289/294 (98.30%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGV CSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIES LENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLN LRIGNLKFLCSS RRVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQ-RRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294
           EEVVGEG+GMMNGSELVQ RRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of HG10006217 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.6e-155
Identity = 279/293 (95.22%), Postives = 286/293 (97.61%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+ CSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIES LENRNS LPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLN LRIGNLKFLCSS RRVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           EEVVGEG+GM+NGSELVQRR TRRWLHVVFAPHLPKSSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of HG10006217 vs. ExPASy TrEMBL
Match: A0A1S3BRJ5 (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.6e-155
Identity = 279/293 (95.22%), Postives = 286/293 (97.61%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+ CSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIES LENRNS LPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLN LRIGNLKFLCSS RRVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           EEVVGEG+GM+NGSELVQRR TRRWLHVVFAPHLPKSSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of HG10006217 vs. ExPASy TrEMBL
Match: A0A5D3BPT7 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00290 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.1e-154
Identity = 277/293 (94.54%), Postives = 286/293 (97.61%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+ CSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLS+AFSSSYPQFSNPS+HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSEAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIES LENRNS LPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLN LRIGNLKFLCSS RRVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRR-TRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           EEVVGEG+GM+NGSELVQRR TRRWLHVVFAPHLP+SSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPESSCEYVINREGVVGVES 293

[Close]

BLAST of HG10006217 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 8.6e-149
Identity = 265/293 (90.44%), Postives = 278/293 (94.88%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGV C+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDI 120
           PLS GGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPS+HIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKR 180
           MPKIESFL NR+S LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+N LRIGNLK LCSSGRRVCPALG+AWANCVN+RLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294
           EEVVGEGDG++NG EL QRRTRRWLHVVFAPHLPKSSCEYVINR+GVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of HG10006217 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 367.5 bits (942), Expect = 1.0e-101
Identity = 181/297 (60.94%), Postives = 229/297 (77.10%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSNHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP +H+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++ P++LIV+DS+AALFRS+F+NTPSDLK+RSSLFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+GLRIGNL++L SSGRRV P+LGLAWANCVN+R F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           SR++   V    +   N S  V R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of HG10006217 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 367.5 bits (942), Expect = 1.0e-101
Identity = 181/297 (60.94%), Postives = 229/297 (77.10%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSNHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP +H+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++ P++LIV+DS+AALFRS+F+NTPSDLK+RSSLFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+GLRIGNL++L SSGRRV P+LGLAWANCVN+R F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293
           SR++   V    +   N S  V R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of HG10006217 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-22
Identity = 81/301 (26.91%), Postives = 143/301 (47.51%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPLSN 64
           ++LH  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSN------PSNHIFVEPVHSAHQLF 124
           GGL   ++YI TE  F   R  Q+++A      +++        +N + ++P      +F
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 213

Query: 125 -----------DIMPKIESFL-ENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSL 184
                       ++  +E F+ EN++    ++++++DSI   FR D++    DL +R+ +
Sbjct: 214 YFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTRV 273

Query: 185 FFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLA 244
             +++ K   LAK++SLAVVL NQV      S+G   L +               ALG +
Sbjct: 274 LSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGDS 333

Query: 245 WANCVNTRLFLSRNEEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREG 288
           W++    R+ L              NG E       R+ ++  +P LP +S  Y +   G
Sbjct: 334 WSHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRG 350

[Close]

BLAST of HG10006217 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-22
Identity = 81/301 (26.91%), Postives = 143/301 (47.51%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPLSN 64
           ++LH  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSN------PSNHIFVEPVHSAHQLF 124
           GGL   ++YI TE  F   R  Q+++A      +++        +N + ++P      +F
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 237

Query: 125 -----------DIMPKIESFL-ENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSL 184
                       ++  +E F+ EN++    ++++++DSI   FR D++    DL +R+ +
Sbjct: 238 YFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTRV 297

Query: 185 FFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNGLRIGNLKFLCSSGRRVCPALGLA 244
             +++ K   LAK++SLAVVL NQV      S+G   L +               ALG +
Sbjct: 298 LSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGDS 357

Query: 245 WANCVNTRLFLSRNEEVVGEGDGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREG 288
           W++    R+ L              NG E       R+ ++  +P LP +S  Y +   G
Sbjct: 358 WSHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRG 374

[Close]

BLAST of HG10006217 vs. TAIR 10
Match: AT5G20850.1 (RAS associated with diabetes protein 51 )

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-18
Identity = 75/271 (27.68%), Postives = 117/271 (43.17%), Query Frame = 0


Query: 17  TFGCPIIDRSVGGGVTCSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHT 76
           T G   +D+ + GG+   S+TE+  E   GKTQLC  L +  QLP+  GG    ++YI  
Sbjct: 106 TSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDA 165

Query: 77  EFPFPFRRLQQLSQAFSSSYPQFSNPSNHIFVEPVHSAHQLFDIMPKIESFLENRNSQLP 136
           E  F  +RL Q++  F  +        N  +    ++ HQ   ++      +E R     
Sbjct: 166 EGTFRPQRLLQIADRFGLNGADVL--ENVAYARAYNTDHQSRLLLEAASMMIETR----- 225

Query: 137 IRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKRYSLAVVLTNQVVDLMG 196
             L+++DS  AL+R+DF+    +L  R     K    L+ LA  + +AVV+TNQVV  + 
Sbjct: 226 FALLIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 285

Query: 197 SSDGLNGLRIGNLKFLCSSGRRVCPALGLAWANCVNTRLFLSRNEEVVGEGDGMMNGSEL 256
            S                +G +  P  G   A+   TRL L +                 
Sbjct: 286 GS-------------ALFAGPQFKPIGGNIMAHATTTRLALRKG---------------- 337

Query: 257 VQRRTRRWLHVVFAPHLPKSSCEYVINREGV 288
             R   R   V+ +P LP++   + I+ EGV
Sbjct: 346 --RAEERICKVISSPCLPEAEARFQISTEGV 337

The following BLAST results are available for this feature:

BLAST of HG10006217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150781.1	4.2e-158	96.94	DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical prot...	[more]
XP_038890688.1	5.2e-156	95.22	DNA repair protein XRCC3 homolog [Benincasa hispida]	[more]
XP_008451720.1	3.4e-155	95.22	PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo] >KAA0055575.1 DNA rep...	[more]
TYK01347.1	2.2e-154	94.54	DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa]	[more]
KAG7020901.1	1.8e-148	90.44	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of HG10006217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM5	1.4e-100	60.94	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S...	[more]
Q9CXE6	4.7e-35	34.90	DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1	[more]
O43542	1.7e-32	34.51	DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1	[more]
Q08DH8	4.9e-32	33.11	DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1	[more]
O15315	4.3e-28	31.56	DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2	[more]

BLAST of HG10006217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK93	2.0e-158	96.94	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4...	[more]
A0A5A7UPR6	1.6e-155	95.22	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BRJ5	1.6e-155	95.22	DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV...	[more]
A0A5D3BPT7	1.1e-154	94.54	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1FDM2	8.6e-149	90.44	DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P...	[more]

BLAST of HG10006217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57450.1	1.0e-101	60.94	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT5G57450.2	1.0e-101	60.94	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.1	1.2e-22	26.91	RAS associated with diabetes protein 51C	[more]
AT2G45280.2	1.2e-22	26.91	RAS associated with diabetes protein 51C	[more]
AT5G20850.1	3.1e-18	27.68	RAS associated with diabetes protein 51	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01874	DNAREPAIRADA	coord: 25..53 score: 41.03 coord: 143..167 score: 18.87
None	No IPR available	PANTHER	PTHR46487	DNA REPAIR PROTEIN XRCC3	coord: 1..292
IPR016467	DNA recombination and repair protein, RecA-like	PIRSF	PIRSF005856	Rad51	coord: 1..293 e-value: 1.3E-51 score: 173.5
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 12..288 e-value: 1.0E-42 score: 146.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 11..292 e-value: 2.6E-63 score: 215.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..288
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 12..191 score: 46.497459
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 17..288 e-value: 6.45905E-82 score: 245.186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006217.1	HG10006217.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0071140	resolution of mitotic recombination intermediates
biological_process	GO:0090656	t-circle formation
biological_process	GO:0000722	telomere maintenance via recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033065	Rad51C-XRCC3 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000400	four-way junction DNA binding
molecular_function	GO:0003677	DNA binding