HG10006211 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006211
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S8
Location	Chr07: 15867213 .. 15868826 (-)
RNA-Seq Expression	HG10006211
Synteny	HG10006211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGCCAGATAGAATTTGCAGATTGTTAACACATCTGAATTCTGTACGTGTTTTCTTTTTGTTAATCTGAGAGAACCTTCTTTTATAGGTATTTCCCGTGATTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAGGCTTGGAGAAAAAAGCGAAAGTAACTACCTCTTCTTATATTTCGCCGAGTGTATTTTGAACAATCGGTTTTTATTTCCATTTCCTCACATTATAACTGCTAATAGTTCCACGGAAAGTTTGTAATTTCTTTCTTTGCCATTTCAGTATGATTCTGTAATTATGTAGGTTAGGGTGATTTTTTTTTGGAAAAGTGTGGTAGTTGGTGACAAGGATTTGTCATTTGTTTTCTTCTCCATTATAGTTTTCAGTGGATTTAATTAATATGCATTAGCTGATCTTCTCTTTTTGGTTGTTTATGTATTATTAATCTACATTAGCTCTCTGATTTTCTCTGATAGATTGTTGTTTATCTTTCAGTGGATTTAATTAATATGTATTAGCTATCTGTTCTTCTCTTTTCGGTTGTTTATGCTTTATTAATCTACATTAGCTCTCTAATTCTCTCTGATAGATTGTTGTTTATTGTTCTTTAACTATCACGGATGATTCTTTTTTTTGTCAATTCAAGATAGAACTTTCAACTGCTAATATGTTTTTAAAGTCCTCATGATATTGTTTCTTTCCTCTTTGTTTGTGAAGGTATGAGCTTGGAAGGCAACCTGCCAACACCAAGTTATCCAGTGACAAGTCAATCAGGAGGATTCGAGTTCGTGGTGGTAATGTGAAGTGGCGCGCTTTTAGGCTGGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGGGACTAGAAAGACCCGTATTCTTGATGTGGTCTACAATGCATCAAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAAAGTGCCATAGTTCAAGTTGATGCGGCACCATTTAAACAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCACAGCCTCTGCTAAGAAGGAAGAGGTAGAGGAAGATTTATAGATTAAATGATTGATTTGGTTTATACAATTTTCAGTACAAGTTTTTGTGTAATTAATCAAGTTTCTTATGAGAAGTTAGTGCATTCGTAATCATTACAGATAGTATAATGGGACACCACTTGATTCATATCACAACTTGATTTTTATGGTTGATAGGAAGGTGATGCTGTCACTGAGGAGGTAAAGAAGAGTAACCATGTCCAGCGCGAAATAGAGAAACGTCAGCAGGACCGTAAGCTCGATCCGCATATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGGCCTGGTCAATGTGGCCGAGCAGATGGGTAAGCATTGCAAAGCTCTTAATGATTCTATATTCTATTTCTGTCATGTTCTTTCTTACTTGGTTGAGCACAATCATTGAGGTGCGGAAGGTTATCTGGGTAATGTTGCCTGAGGTTTGCAATTTTTGACAGGTATATATTGGAGGGCAAAGAGCTTGAATTCTATATGAAGAAGCTCCAAAGAAAGAAGGGAAAAGGAGCTGGTGCTGCATAA

mRNA sequence

ATGGGTATTTCCCGTGATTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAGGCTTGGAGAAAAAAGCGAAAGTATGAGCTTGGAAGGCAACCTGCCAACACCAAGTTATCCAGTGACAAGTCAATCAGGAGGATTCGAGTTCGTGGTGGTAATGTGAAGTGGCGCGCTTTTAGGCTGGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGGGACTAGAAAGACCCGTATTCTTGATGTGGTCTACAATGCATCAAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAAAGTGCCATAGTTCAAGTTGATGCGGCACCATTTAAACAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCACAGCCTCTGCTAAGAAGGAAGAGGAAGGTGATGCTGTCACTGAGGAGGTAAAGAAGAGTAACCATGTCCAGCGCGAAATAGAGAAACGTCAGCAGGACCGTAAGCTCGATCCGCATATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGGCCTGGTCAATGTGGCCGAGCAGATGGGTATATATTGGAGGGCAAAGAGCTTGAATTCTATATGAAGAAGCTCCAAAGAAAGAAGGGAAAAGGAGCTGGTGCTGCATAA

Coding sequence (CDS)

ATGGGTATTTCCCGTGATTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAGGCTTGGAGAAAAAAGCGAAAGTATGAGCTTGGAAGGCAACCTGCCAACACCAAGTTATCCAGTGACAAGTCAATCAGGAGGATTCGAGTTCGTGGTGGTAATGTGAAGTGGCGCGCTTTTAGGCTGGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGGGACTAGAAAGACCCGTATTCTTGATGTGGTCTACAATGCATCAAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAAAGTGCCATAGTTCAAGTTGATGCGGCACCATTTAAACAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCACAGCCTCTGCTAAGAAGGAAGAGGAAGGTGATGCTGTCACTGAGGAGGTAAAGAAGAGTAACCATGTCCAGCGCGAAATAGAGAAACGTCAGCAGGACCGTAAGCTCGATCCGCATATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGGCCTGGTCAATGTGGCCGAGCAGATGGGTATATATTGGAGGGCAAAGAGCTTGAATTCTATATGAAGAAGCTCCAAAGAAAGAAGGGAAAAGGAGCTGGTGCTGCATAA

Protein sequence

MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

Homology

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BLAST of HG10006211 vs. NCBI nr
Match: XP_008451649.1 (PREDICTED: 40S ribosomal protein S8-like [Cucumis melo] >TYK01356.1 40S ribosomal protein S8-like [Cucumis melo var. makuwa])

HSP 1 Score: 417.5 bits (1072), Expect = 6.9e-113
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT+ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASAKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

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BLAST of HG10006211 vs. NCBI nr
Match: XP_022929761.1 (40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal protein S8-like [Cucurbita moschata] >XP_022997461.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_022997462.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_023547179.1 40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 417.2 bits (1071), Expect = 9.0e-113
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

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BLAST of HG10006211 vs. NCBI nr
Match: XP_038891236.1 (40S ribosomal protein S8 [Benincasa hispida])

HSP 1 Score: 417.2 bits (1071), Expect = 9.0e-113
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKK+EEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQF SGRLMAC
Sbjct: 121 DIGRKKKTLASAKKDEEGDAATEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFGSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

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BLAST of HG10006211 vs. NCBI nr
Match: KAG6598870.1 (40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 416.8 bits (1070), Expect = 1.2e-112
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTIASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of HG10006211 vs. NCBI nr
Match: KAG7029811.1 (40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 415.6 bits (1067), Expect = 2.6e-112
Identity = 212/219 (96.80%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           +GISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 22  IGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 81

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 82  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 141

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 142 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 201

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 202 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 240

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BLAST of HG10006211 vs. ExPASy Swiss-Prot
Match: P49199 (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 371.7 bits (953), Expect = 5.7e-102
Identity = 193/221 (87.33%), Postives = 203/221 (91.86%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTTASAKKEEEG---DAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKK  A AKK+ EG   +A TEE KKSNHV R++EKRQQ R LD HIEEQF SGRL
Sbjct: 121 DIGRKKKAPA-AKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220

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BLAST of HG10006211 vs. ExPASy Swiss-Prot
Match: O81361 (40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 9.7e-102
Identity = 192/221 (86.88%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEA TRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKE--EEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLM 180
           +IGRKKK TA+AKK+  EEG+A TEE KKSNHV  ++EKRQQ R LD HIEEQF  G+L+
Sbjct: 121 EIGRKKK-TAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ACISSRPGQCG+ADG ILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220

[Close]

BLAST of HG10006211 vs. ExPASy Swiss-Prot
Match: Q08069 (40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 369.0 bits (946), Expect = 3.7e-101
Identity = 189/221 (85.52%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTTASAKKEEEG---DAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKKT A+ K   EG   +A  EE KKSNHV R++EKR++ R LDPHIEEQF SGRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK A A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221

[Close]

BLAST of HG10006211 vs. ExPASy Swiss-Prot
Match: Q93VG5 (40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.2e-97
Identity = 180/221 (81.45%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRKKKTTASAKKE-EEGD----AVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSG 180
           ++GRKKK+ +S KK+ EEG+    A  EEVKKSNH+ R+I  RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

[Close]

BLAST of HG10006211 vs. ExPASy Swiss-Prot
Match: Q9FIF3 (40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.5e-97
Identity = 185/220 (84.09%), Postives = 199/220 (90.45%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEA TRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAV-TEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMA 180
           DIGRKKK          G+AV TEEVKKSNHVQR++E RQ+ R LD H+EEQFSSGRL+A
Sbjct: 121 DIGRKKK----------GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLA 180

Query: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           CI+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 181 CIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

[Close]

BLAST of HG10006211 vs. ExPASy TrEMBL
Match: A0A5D3BT12 (40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00420 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.3e-113
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT+ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASAKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of HG10006211 vs. ExPASy TrEMBL
Match: A0A1S3BRZ4 (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.3e-113
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT+ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASAKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of HG10006211 vs. ExPASy TrEMBL
Match: A0A6J1K537 (40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111492371 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.4e-113
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of HG10006211 vs. ExPASy TrEMBL
Match: A0A6J1EP23 (40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111436251 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.4e-113
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of HG10006211 vs. ExPASy TrEMBL
Match: A0A0A0LJA0 (40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_2G059750 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 212/219 (96.80%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT+AS KKEEEGDA TEEVKKSNHVQR+IEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASVKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of HG10006211 vs. TAIR 10
Match: AT5G20290.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 355.9 bits (912), Expect = 2.3e-98
Identity = 180/221 (81.45%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRKKKTTASAKKE-EEGD----AVTEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSG 180
           ++GRKKK+ +S KK+ EEG+    A  EEVKKSNH+ R+I  RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

[Close]

BLAST of HG10006211 vs. TAIR 10
Match: AT5G59240.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 355.1 bits (910), Expect = 3.9e-98
Identity = 185/220 (84.09%), Postives = 199/220 (90.45%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAGTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEA TRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKTTASAKKEEEGDAV-TEEVKKSNHVQREIEKRQQDRKLDPHIEEQFSSGRLMA 180
           DIGRKKK          G+AV TEEVKKSNHVQR++E RQ+ R LD H+EEQFSSGRL+A
Sbjct: 121 DIGRKKK----------GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLA 180

Query: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           CI+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 181 CIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

The following BLAST results are available for this feature:

BLAST of HG10006211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451649.1	6.9e-113	97.72	PREDICTED: 40S ribosomal protein S8-like [Cucumis melo] >TYK01356.1 40S ribosoma...	[more]
XP_022929761.1	9.0e-113	97.26	40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal...	[more]
XP_038891236.1	9.0e-113	97.26	40S ribosomal protein S8 [Benincasa hispida]	[more]
KAG6598870.1	1.2e-112	97.26	40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7029811.1	2.6e-112	96.80	40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10006211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49199	5.7e-102	87.33	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 S...	[more]
O81361	9.7e-102	86.88	40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1	[more]
Q08069	3.7e-101	85.52	40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2	[more]
Q93VG5	3.2e-97	81.45	40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1	[more]
Q9FIF3	5.5e-97	84.09	40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1	[more]

BLAST of HG10006211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BT12	3.3e-113	97.72	40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BRZ4	3.3e-113	97.72	40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1	[more]
A0A6J1K537	4.4e-113	97.26	40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111492371 PE=3 SV=1	[more]
A0A6J1EP23	4.4e-113	97.26	40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111436251 PE=3 SV=1	[more]
A0A0A0LJA0	1.7e-112	96.80	40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_2G059750 PE=3 SV=1	[more]

BLAST of HG10006211 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20290.1	2.3e-98	81.45	Ribosomal protein S8e family protein	[more]
AT5G59240.1	3.9e-98	84.09	Ribosomal protein S8e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2	PFAM	PF01201	Ribosomal_S8e	coord: 1..196 e-value: 4.1E-55 score: 185.7
None	No IPR available	GENE3D	3.10.290.70		coord: 32..160 e-value: 4.3E-39 score: 135.4 coord: 161..214 e-value: 1.2E-17 score: 66.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	PANTHER	PTHR10394:SF18	40S RIBOSOMAL PROTEIN S8	coord: 1..217
None	No IPR available	CDD	cd11380	Ribosomal_S8e_like	coord: 5..196 e-value: 1.08729E-58 score: 179.638
IPR001047	Ribosomal protein S8e	TIGRFAM	TIGR00307	TIGR00307	coord: 1..198 e-value: 6.3E-46 score: 153.6
IPR001047	Ribosomal protein S8e	PANTHER	PTHR10394	40S RIBOSOMAL PROTEIN S8	coord: 1..217
IPR018283	Ribosomal protein S8e, conserved site	PROSITE	PS01193	RIBOSOMAL_S8E	coord: 11..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006211.1	HG10006211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome