HG10006208 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006208
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr07: 15836191 .. 15836403 (+)
RNA-Seq Expression	HG10006208
Synteny	HG10006208

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAGAGAATGAAGGATTGTGGCCTTTCTCCAAGTTTGGTTACTTACAATGTTATGCTTCATGTTTATGGGAAAATAGGTCGCTCTTGGGATAAAATTTTAGGCTTATTCGATGAAACGAGGAGTGAAGGTTTGCAATTTGATGAGTCTACCTGCAATACTATGACATCTGCGTGCGGAAGAAAGGGTTTTATAAATGAAGCTAAATAA

mRNA sequence

ATGTTTGAGAGAATGAAGGATTGTGGCCTTTCTCCAAGTTTGGTTACTTACAATGTTATGCTTCATGTTTATGGGAAAATAGGTCGCTCTTGGGATAAAATTTTAGGCTTATTCGATGAAACGAGGAGTGAAGGTTTGCAATTTGATGAGTCTACCTGCAATACTATGACATCTGCGTGCGGAAGAAAGGGTTTTATAAATGAAGCTAAATAA

Coding sequence (CDS)

ATGTTTGAGAGAATGAAGGATTGTGGCCTTTCTCCAAGTTTGGTTACTTACAATGTTATGCTTCATGTTTATGGGAAAATAGGTCGCTCTTGGGATAAAATTTTAGGCTTATTCGATGAAACGAGGAGTGAAGGTTTGCAATTTGATGAGTCTACCTGCAATACTATGACATCTGCGTGCGGAAGAAAGGGTTTTATAAATGAAGCTAAATAA

Protein sequence

MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

Homology

[Close]

BLAST of HG10006208 vs. NCBI nr
Match: KAG7029815.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 7.0e-27
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SAC
Sbjct: 252 MFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSEGLQFDEFTCSTVISAC 311

Query: 61  GRKGFINEAK 71
           GR+G INEAK
Sbjct: 312 GREGLINEAK 321

[Close]

BLAST of HG10006208 vs. NCBI nr
Match: KAG6598873.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 7.0e-27
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SAC
Sbjct: 253 MFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSEGLQFDEFTCSTVISAC 312

Query: 61  GRKGFINEAK 71
           GR+G INEAK
Sbjct: 313 GREGLINEAK 322

[Close]

BLAST of HG10006208 vs. NCBI nr
Match: XP_022997385.1 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SAC
Sbjct: 252 MFDRMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSEGLQFDEFTCSTVISAC 311

Query: 61  GRKGFINEAK 71
           GR+G INEAK
Sbjct: 312 GREGLINEAK 321

[Close]

BLAST of HG10006208 vs. NCBI nr
Match: XP_022997384.1 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SAC
Sbjct: 252 MFDRMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSEGLQFDEFTCSTVISAC 311

Query: 61  GRKGFINEAK 71
           GR+G INEAK
Sbjct: 312 GREGLINEAK 321

[Close]

BLAST of HG10006208 vs. NCBI nr
Match: KAG7020910.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 6.0e-26
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RS+GL+FDE TC+T+ SAC
Sbjct: 246 MFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSDGLEFDEFTCSTVISAC 305

Query: 61  GRKGFINEAK 71
           GR+G +NEAK
Sbjct: 306 GREGLLNEAK 315

[Close]

BLAST of HG10006208 vs. ExPASy Swiss-Prot
Match: O64624 (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.1e-22
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +FERMK+ G SP+LVTYNV+L V+GK+GRSW KILG+ DE RS+GL+FDE TC+T+ SAC
Sbjct: 232 LFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSAC 291

Query: 61  GRKGFINEAK 71
            R+G + EAK
Sbjct: 292 AREGLLREAK 301

[Close]

BLAST of HG10006208 vs. ExPASy Swiss-Prot
Match: B8Y6I0 (Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=4577 GN=PPR10 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 32/69 (46.38%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +F  ++  G++P+LVTYNV+L VYG++GRSW +I+ L DE R+ G++ D  T +T+ +AC
Sbjct: 196 LFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAAC 255

Query: 61  GRKGFINEA 70
            R G ++EA
Sbjct: 256 CRDGLVDEA 264

[Close]

BLAST of HG10006208 vs. ExPASy Swiss-Prot
Match: Q9LYZ9 (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX=3702 GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-11
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +F++M++ G  P+L+TYNV+L+V+GK+G  W+KI  L ++ +S+G+  D  T NT+ + C
Sbjct: 230 VFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289

Query: 61  GRKGFINEA 70
            R     EA
Sbjct: 290 KRGSLHQEA 298

[Close]

BLAST of HG10006208 vs. ExPASy Swiss-Prot
Match: Q9S7Q2 (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-10
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           + +RMK+  +SPS++TYN +++   + G  W+ +LGLF E R EG+Q D  T NT+ SAC
Sbjct: 198 LLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSAC 257

Query: 61  GRKGFINEAK 71
             +G  +EA+
Sbjct: 258 AIRGLGDEAE 267

[Close]

BLAST of HG10006208 vs. ExPASy Swiss-Prot
Match: Q9SIC9 (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-08
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +F  MK+ GL P+LVTYN ++   GK G  + ++   FDE +  G+Q D  T N++ + C
Sbjct: 290 VFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVC 349

Query: 61  GRKGFINEAK 71
            R G    A+
Sbjct: 350 SRGGLWEAAR 359

[Close]

BLAST of HG10006208 vs. ExPASy TrEMBL
Match: A0A6J1KB83 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492320 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.6e-27
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SAC
Sbjct: 252 MFDRMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSEGLQFDEFTCSTVISAC 311

Query: 61  GRKGFINEAK 71
           GR+G INEAK
Sbjct: 312 GREGLINEAK 321

[Close]

BLAST of HG10006208 vs. ExPASy TrEMBL
Match: A0A6J1K9G3 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492320 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.6e-27
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SAC
Sbjct: 252 MFDRMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSEGLQFDEFTCSTVISAC 311

Query: 61  GRKGFINEAK 71
           GR+G INEAK
Sbjct: 312 GREGLINEAK 321

[Close]

BLAST of HG10006208 vs. ExPASy TrEMBL
Match: A0A6J1FBH7 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443919 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RS+GL+FDE TC+T+ SAC
Sbjct: 246 MFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSDGLEFDEFTCSTVISAC 305

Query: 61  GRKGFINEAK 71
           GR+G +NEAK
Sbjct: 306 GREGLLNEAK 315

[Close]

BLAST of HG10006208 vs. ExPASy TrEMBL
Match: A0A6J1HWN3 (pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468552 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RS+GL+FDE TC+T+ SAC
Sbjct: 246 MFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILGLLDEMRSDGLKFDEFTCSTVISAC 305

Query: 61  GRKGFINEAK 71
           GR+G +NEAK
Sbjct: 306 GREGLLNEAK 315

[Close]

BLAST of HG10006208 vs. ExPASy TrEMBL
Match: A0A0A0LMF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059820 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-26
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKIL L DE R+EGLQFDE TC+T+ SAC
Sbjct: 254 MFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISAC 313

Query: 61  GRKGFINEAK 71
           GR+G INEAK
Sbjct: 314 GREGLINEAK 323

[Close]

BLAST of HG10006208 vs. TAIR 10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 5.0e-23
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +FERMK+ G SP+LVTYNV+L V+GK+GRSW KILG+ DE RS+GL+FDE TC+T+ SAC
Sbjct: 232 LFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSAC 291

Query: 61  GRKGFINEAK 71
            R+G + EAK
Sbjct: 292 AREGLLREAK 301

[Close]

BLAST of HG10006208 vs. TAIR 10
Match: AT5G02860.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.2e-12
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +F++M++ G  P+L+TYNV+L+V+GK+G  W+KI  L ++ +S+G+  D  T NT+ + C
Sbjct: 230 VFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289

Query: 61  GRKGFINEA 70
            R     EA
Sbjct: 290 KRGSLHQEA 298

[Close]

BLAST of HG10006208 vs. TAIR 10
Match: AT1G74850.1 (plastid transcriptionally active 2 )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           + +RMK+  +SPS++TYN +++   + G  W+ +LGLF E R EG+Q D  T NT+ SAC
Sbjct: 198 LLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSAC 257

Query: 61  GRKGFINEAK 71
             +G  +EA+
Sbjct: 258 AIRGLGDEAE 267

[Close]

BLAST of HG10006208 vs. TAIR 10
Match: AT2G31400.1 (genomes uncoupled 1 )

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-09
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +F  MK+ GL P+LVTYN ++   GK G  + ++   FDE +  G+Q D  T N++ + C
Sbjct: 290 VFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVC 349

Query: 61  GRKGFINEAK 71
            R G    A+
Sbjct: 350 SRGGLWEAAR 359

[Close]

BLAST of HG10006208 vs. TAIR 10
Match: AT2G19280.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 1   MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSAC 60
           +F  MK  GL   +VTYN ++H YGK     +K+  L DE RS G+  D +T N +  + 
Sbjct: 465 VFRNMKTEGLKLDVVTYNNLMHGYGKT-HQLNKVFELIDEMRSAGISPDVATYNILIHSM 524

Query: 61  GRKGFINEA 70
             +G+I+EA
Sbjct: 525 VVRGYIDEA 532

The following BLAST results are available for this feature:

BLAST of HG10006208 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029815.1	7.0e-27	85.71	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
KAG6598873.1	7.0e-27	85.71	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022997385.1	1.6e-26	84.29	pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isofor...	[more]
XP_022997384.1	1.6e-26	84.29	pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isofor...	[more]
KAG7020910.1	6.0e-26	81.43	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]

BLAST of HG10006208 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64624	7.1e-22	65.71	Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop...	[more]
B8Y6I0	2.1e-13	46.38	Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=457...	[more]
Q9LYZ9	7.3e-11	40.58	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX...	[more]
Q9S7Q2	1.6e-10	42.86	Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop...	[more]
Q9SIC9	5.8e-08	37.14	Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop...	[more]

BLAST of HG10006208 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KB83	7.6e-27	84.29	pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isofor...	[more]
A0A6J1K9G3	7.6e-27	84.29	pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isofor...	[more]
A0A6J1FBH7	2.9e-26	81.43	pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like OS=Cuc...	[more]
A0A6J1HWN3	3.8e-26	81.43	pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like OS=Cuc...	[more]
A0A0A0LMF0	4.9e-26	82.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059820 PE=4 SV=1	[more]

BLAST of HG10006208 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18940.1	5.0e-23	65.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G02860.1	5.2e-12	40.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G74850.1	1.2e-11	42.86	plastid transcriptionally active 2	[more]
AT2G31400.1	4.1e-09	37.14	genomes uncoupled 1	[more]
AT2G19280.1	3.0e-07	39.13	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..70 e-value: 4.1E-16 score: 61.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 15..49 e-value: 1.7E-5 score: 22.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 12..60 e-value: 2.0E-8 score: 34.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 13..48 score: 10.226951
None	No IPR available	PANTHER	PTHR47447:SF9	SUBFAMILY NOT NAMED	coord: 1..69
None	No IPR available	PANTHER	PTHR47447	OS03G0856100 PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006208.1	HG10006208.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding