HG10006195 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006195
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S acidic ribosomal protein P3
Location	Chr07: 15580173 .. 15581174 (-)
RNA-Seq Expression	HG10006195
Synteny	HG10006195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTACTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTATTCAGCGTTTTCTCTGTTATTCCGGTTTTTTATTCCTCTCGATCTGATGCGTTTACTCTTCAATCTTTTATTATAAACTCGCGTACTTAGTGTTTGTGTTATTGCTTAGTCTGGTTAGTAATGTTATTGTATGTATGGATACGTAACTTTTCCTTTGCTGTGCAATGAGGGTCGACTGTTTTTCTAGTTTTTCCATCTTTAGCGTATGTTTGAACTTTTGGCTTTTGTTTGATATTTAGTTTGGTGTTTTAACAATTACGATTATGGTTTCTGGGTACACGATCGATTAAGCAGCTATTGATTACGGGAATTCGCCAATTATATGGTCTTATAATGAATTAAAGCATTGTTGGTGATCATTCTTGTAGTATGTTCATTGTTGAGTTCCTTGATTAGTTTATAACCTATCTACATTAACTCATTGAATTTAACCTTCTTTGGATAAGAAGATCTAACATATTTCAAGAAGAATGTGTCTTCCGGGTTTGCAGAGATATTTGGAAGAACTTGGTTGAGGGTCTTTTTCGTCTTCACTCTATTTATGATTTATGATATCTCCTCAACTGGCTTCCTCCTTGCTTGCCTATTGTTATCTGTTGTGTGTGCCTAGTTTAAACATTAGTTTTTCAGGTGATCGTTGGCGGTGGCGGTGGAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAG

mRNA sequence

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTACTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTGATCGTTGGCGGTGGCGGTGGAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAG

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTACTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTGATCGTTGGCGGTGGCGGTGGAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAG

Protein sequence

MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD

Homology

[Close]

BLAST of HG10006195 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 122

[Close]

BLAST of HG10006195 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 3.2e-51
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of HG10006195 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.5e-48
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIVGGG GGGF  GGG AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGG-AAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of HG10006195 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-47
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of HG10006195 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS I+P
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GGGGGGGFI GGGAAAAAP+GG AP AAEAPAEKKEE KEES DDDLGLSL
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAP-AAEAPAEKKEEEKEES-DDDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of HG10006195 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-34
Identity = 81/121 (66.94%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVF V++GGGGGGGF  GGGAAA    GG+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 119

Query: 121 F 122
           F
Sbjct: 121 F 119

[Close]

BLAST of HG10006195 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.5e-31
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGF   GGAA++    G+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGF-SAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of HG10006195 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGV+TFVCRSSG +WTA Q  G+LE SA + YELQR+LV +A + DS+ GVQSSFS+++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP--AEKKEEVKEESDDDDLGL 120
           +SAVFQVI+G  GGG  IGGG AA AA  G    AAAEAP   EKKEE KEES +DDLG 
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGG----AAAEAPKAEEKKEEEKEES-EDDLGF 119

Query: 121 SLFD 123
           SLFD
Sbjct: 121 SLFD 119

[Close]

BLAST of HG10006195 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-29
Identity = 75/123 (60.98%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGV+TFVCR++GG+WTA Q+SG++E SA + YELQR+LV +A + DS  GVQSSFS++TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVIVGG-GGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLS 120
           +SAVFQVIVG  GGG   + GGG   AA +GG   AAAEAP E+K+E ++E  DDD+G S
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

Query: 121 LFD 123
           LFD
Sbjct: 121 LFD 120

[Close]

BLAST of HG10006195 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of HG10006195 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of HG10006195 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIVGGG GGGF  GGG AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGG-AAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of HG10006195 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.0e-48
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of HG10006195 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.0e-48
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of HG10006195 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-35
Identity = 81/121 (66.94%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVF V++GGGGGGGF  GGGAAA    GG+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 119

Query: 121 F 122
           F
Sbjct: 121 F 119

[Close]

BLAST of HG10006195 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-34
Identity = 81/121 (66.94%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVF V++GGGGGGGF  GGGAAA    GG+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of HG10006195 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.4 bits (337), Expect = 6.1e-32
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGF   GGAA++    G+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGF-SAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of HG10006195 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 127.1 bits (318), Expect = 9.7e-30
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
          MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQVIVGGGGGGGFIGGGG 83
          TSAVF V++GGGGGGGF  GGG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGG 82

The following BLAST results are available for this feature:

BLAST of HG10006195 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889531.1	4.5e-53	97.54	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_008451467.1	3.2e-51	96.72	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_004148320.1	2.5e-48	93.44	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_022929782.1	1.6e-47	89.34	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]
XP_022153281.1	1.9e-43	87.70	60S acidic ribosomal protein P3-2 [Momordica charantia]	[more]

BLAST of HG10006195 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	2.8e-34	66.94	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
Q9SVZ6	8.5e-31	65.29	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
P56724	1.2e-29	65.32	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
O24413	2.1e-29	60.98	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]

BLAST of HG10006195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNN6	1.6e-51	96.72	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	1.6e-51	96.72	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A0A0LJB2	1.2e-48	93.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A6J1KB28	8.0e-48	89.34	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	8.0e-48	89.34	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of HG10006195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	2.0e-35	66.94	60S acidic ribosomal protein family	[more]
AT5G57290.3	3.8e-34	66.94	60S acidic ribosomal protein family	[more]
AT4G25890.1	6.1e-32	65.29	60S acidic ribosomal protein family	[more]
AT5G57290.2	9.7e-30	76.83	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 76..121 e-value: 8.7E-11 score: 42.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..122
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006195.1	HG10006195.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome