HG10006054 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006054
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ankyrin repeat-containing protein
Location	Chr07: 12447461 .. 12447658 (-)
RNA-Seq Expression	HG10006054
Synteny	HG10006054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAGTCAAAGAGTTTCCCTTCAATTCCAATTCAACATGGTTTAAGCCTAACTTCTACATCTGCACATCATGAGCAAGTACAGGTTGTTGTTCAAGGCCAACCCATTATTCCTCCGCCGTCTATGGCGGCCGACGACTCCCAATCTCCCCTCACTCTTGCTCAGTTGTTCAATAAGGCGGATATAAAGATTTGA

mRNA sequence

ATGAGAAAGTCAAAGAGTTTCCCTTCAATTCCAATTCAACATGGTTTAAGCCTAACTTCTACATCTGCACATCATGAGCAAGTACAGGTTGTTGTTCAAGGCCAACCCATTATTCCTCCGCCGTCTATGGCGGCCGACGACTCCCAATCTCCCCTCACTCTTGCTCAGTTGTTCAATAAGGCGGATATAAAGATTTGA

Coding sequence (CDS)

ATGAGAAAGTCAAAGAGTTTCCCTTCAATTCCAATTCAACATGGTTTAAGCCTAACTTCTACATCTGCACATCATGAGCAAGTACAGGTTGTTGTTCAAGGCCAACCCATTATTCCTCCGCCGTCTATGGCGGCCGACGACTCCCAATCTCCCCTCACTCTTGCTCAGTTGTTCAATAAGGCGGATATAAAGATTTGA

Protein sequence

MRKSKSFPSIPIQHGLSLTSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLAQLFNKADIKI

Homology

[Close]

BLAST of HG10006054 vs. NCBI nr
Match: XP_008440652.1 (PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo] >TYJ99317.1 ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-14
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MRKSKSFPSIPIQHGLSL---TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
          MRKSKSFPSIPIQ GLSL   T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAA 58

[Close]

BLAST of HG10006054 vs. NCBI nr
Match: KAA0055387.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-14
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MRKSKSFPSIPIQHGLSL---TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
          MRKSKSFPSIPIQ GLSL   T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAA 58

[Close]

BLAST of HG10006054 vs. NCBI nr
Match: XP_004153067.1 (ankyrin repeat-containing protein ITN1 isoform X1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MRKSKSFPSIPIQHG-LSL----TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
          MRKSKS PSIPIQ G LSL    T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 1  MRKSKSSPSIPIQSGSLSLTTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQLPPTAA 60

[Close]

BLAST of HG10006054 vs. NCBI nr
Match: KGN64482.2 (hypothetical protein Csa_013492 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1   MRKSKSFPSIPIQHG-LSL----TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
           MRKSKS PSIPIQ G LSL    T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 660 MRKSKSSPSIPIQSGSLSLTTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQLPPTAA 719

[Close]

BLAST of HG10006054 vs. ExPASy TrEMBL
Match: A0A5D3BJL1 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005310 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MRKSKSFPSIPIQHGLSL---TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
          MRKSKSFPSIPIQ GLSL   T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAA 58

[Close]

BLAST of HG10006054 vs. ExPASy TrEMBL
Match: A0A5A7ULD5 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002320 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MRKSKSFPSIPIQHGLSL---TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
          MRKSKSFPSIPIQ GLSL   T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAA 58

[Close]

BLAST of HG10006054 vs. ExPASy TrEMBL
Match: A0A1S3B281 (ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC103485002 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MRKSKSFPSIPIQHGLSL---TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
          MRKSKSFPSIPIQ GLSL   T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAA 58

[Close]

BLAST of HG10006054 vs. ExPASy TrEMBL
Match: A0A0A0LWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058110 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MRKSKSFPSIPIQHG-LSL----TSTSAHHEQVQVVVQGQPIIPPPSMAADDSQSPLTLA 56
          MRKSKS PSIPIQ G LSL    T+TS+HHEQV++VV+GQPIIPPPS AADDSQ P T A
Sbjct: 1  MRKSKSSPSIPIQSGSLSLTTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQLPPTAA 60

The following BLAST results are available for this feature:

BLAST of HG10006054 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440652.1	6.3e-14	77.59	PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo] >TYJ9...	[more]
KAA0055387.1	6.3e-14	77.59	ankyrin repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_004153067.1	1.7e-11	73.33	ankyrin repeat-containing protein ITN1 isoform X1 [Cucumis sativus]	[more]
KGN64482.2	1.7e-11	73.33	hypothetical protein Csa_013492 [Cucumis sativus]	[more]

BLAST of HG10006054 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJL1	3.1e-14	77.59	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7ULD5	3.1e-14	77.59	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3B281	3.1e-14	77.59	ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LWX0	8.4e-12	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058110 PE=4 SV=1	[more]

BLAST of HG10006054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006054.1	HG10006054.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane