HG10006041 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006041
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Response regulatory domain-containing protein
Location	Chr07: 12099008 .. 12100808 (+)
RNA-Seq Expression	HG10006041
Synteny	HG10006041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAAGTGGTGAGAGGAAGAAAGTGAGTTGTTTGGTTGTGGATGATGAGGAAGTGAATAGATATATTCACATGTGTCTTCTTAAAAAGTTGAATGTTGAAGTTGAGGAAGCTGAAAATGGAAAGGTAGCCATTGATGCTTTCAAAGGTGGAGCTTCTTTTGATCTTGTTCTTATGGATTTGGAAATGCCTATCATGGATGGGTTTCAGGTACTATTATTCTCATTACTACCATAAATCATTTCTATATATATATATATATATATAAAACTTAACTAAGTCTCGTTTGATAATAATTTCGTCTTTGTTTGATACTCGTTTTGCTTTTTAGTTTTCTGTTTTTGAAAATTATATAGGCGTGTTTCAAATCTCAATTTTTTTTTTTTTTTTGGTTAAAATACATTTGAAATATTCTAAGATAAATTTCAAAAATAAAATTAGTTTTAAATTTTAGTTTTCAAATCGGGTTTTGTTTTTGAAAAGTAGGTAATAAAGGAAGGAAAATTATAGATAGAAATAGCTATTGTAAGCTTATTTTTCGAAATAAAAAAAAAAAACAAAAAATAATGGTCACGTTTGGTAACTATTTTGTTTTTTTGTTTTTGTTTTTTAAAATTTAGCCTATTTCCTTCTCATTTCTTATATTGATTTGCATTCTCTTAAGTACAATAGTTGAATTCTTTGCCAAATTTTAAAAACTAAAACAAGTTTTTCAATGCTACTTTTTTTAGTTTTCAAATTTTGGCTTGATTTTTTTAAACCATTGGTAAAAAGTAGATAATAAAATAATAAATTTGAAGGTGAAAGTAGTGTCTATAGACTAAATTTTCAAAAAAAAAAAAAAAAAATAGAAATAGAAATAGTTACAAAATGGGGCCAAAATAAATATCAAAATGAGCCTTCGCTTATTGCTTCTTTCTTTTTTTTTTTTTGTGAAAATTGTGTTTTTACTTTGCGATGGTTTTCACATCTTTTAAAGAAATATTTGAATTTCATAATAAAATTAAAAAAATTTAAGGCTCCTTTGGCGACAAATTTTTATTTTTTATTTTTTTGTTTTTGAAAATTAAGCTTAGAAACACTCATTTTACCTCTAAATTTCTTGTTTTATTATATACTTTCTATTAGTGTTTCAAAAAACAAGTAAAAATTTAAAAATTAATTTTTTTTTTAAGAATTGAAGTAAAATTTCAAAAATGGAAAGAAATTTTCAAAAATTACAAATTAAAAACGAAATGAATACCAAACAACGCCCAAATACTAAACAACTAGTTAACATAGAGAGCCATAATTACTTAGAAATGGTGTTTTCAAAGAAGAAAAACTAAGTAAAACTTTTATTAAAAAAGTTAGTTTGGGATAAAGTAATTAATTTAATTTTCAAGAAATAGTTTTCTTAAAAATTATTTTAAGAAGGAATTACTCCCTCCAAGTAAAAGTTTGAAATGGTTTTTGAATTCAACCTTTCCAAAACAAAACACATATATACCAAATAAAGTAGGAAACGATGGAAAAACCCTAATACCCACAAGAATAAAATAATTAGATGAAATTGAAAAGTGAAATTTGATGGAAAATAATTTAAAATTTTATAATAATAATAATAATTAATTATATTGAAAAGGCAACAAAGGAGCTGCTAAGAATGGGAGTTAAAAGCAAGATAGTTGGAGTGACAGGACATGGCCCAACCTCTGAGAAGAAAGCTGCTTTTATGGAGGCTGGTCTTCATGATTGTTTGATTAAGCCATTGACTATTCAAAACCTTCACCTTCTTCTCCAACAACTCCAAAACTAA

mRNA sequence

ATGGAAGGAAGTGGTGAGAGGAAGAAAGTGAGTTGTTTGGTTGTGGATGATGAGGAAGTGAATAGATATATTCACATGTGTCTTCTTAAAAAGTTGAATGTTGAAGTTGAGGAAGCTGAAAATGGAAAGGTAGCCATTGATGCTTTCAAAGGTGGAGCTTCTTTTGATCTTGTTCTTATGGATTTGGAAATGCCTATCATGGATGGGTTTCAGGCAACAAAGGAGCTGCTAAGAATGGGAGTTAAAAGCAAGATAGTTGGAGTGACAGGACATGGCCCAACCTCTGAGAAGAAAGCTGCTTTTATGGAGGCTGGTCTTCATGATTGTTTGATTAAGCCATTGACTATTCAAAACCTTCACCTTCTTCTCCAACAACTCCAAAACTAA

Coding sequence (CDS)

ATGGAAGGAAGTGGTGAGAGGAAGAAAGTGAGTTGTTTGGTTGTGGATGATGAGGAAGTGAATAGATATATTCACATGTGTCTTCTTAAAAAGTTGAATGTTGAAGTTGAGGAAGCTGAAAATGGAAAGGTAGCCATTGATGCTTTCAAAGGTGGAGCTTCTTTTGATCTTGTTCTTATGGATTTGGAAATGCCTATCATGGATGGGTTTCAGGCAACAAAGGAGCTGCTAAGAATGGGAGTTAAAAGCAAGATAGTTGGAGTGACAGGACATGGCCCAACCTCTGAGAAGAAAGCTGCTTTTATGGAGGCTGGTCTTCATGATTGTTTGATTAAGCCATTGACTATTCAAAACCTTCACCTTCTTCTCCAACAACTCCAAAACTAA

Protein sequence

MEGSGERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLMDLEMPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQQLQN

Homology

[Close]

BLAST of HG10006041 vs. NCBI nr
Match: XP_038889283.1 (two-component response regulator 24-like [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 8.0e-45
Identity = 99/124 (79.84%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MEGSGERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLM 60
           MEG G  KKVS LVVDDE VNR IHM LLKKLNVE E AENGK A++AF+GGASFDLVLM
Sbjct: 13  MEG-GSEKKVSGLVVDDEAVNRQIHMSLLKKLNVEAEAAENGKEAVEAFQGGASFDLVLM 72

Query: 61  DLEMPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLH 120
           DLEMP MDG QATKEL RMGVKSKI+GVTGHGPTSEKKAAFMEAGL  C +KPLTI++L 
Sbjct: 73  DLEMPAMDGLQATKELRRMGVKSKIIGVTGHGPTSEKKAAFMEAGLDHCFMKPLTIESLQ 132

Query: 121 LLLQ 125
            LLQ
Sbjct: 133 TLLQ 135

[Close]

BLAST of HG10006041 vs. NCBI nr
Match: XP_022144466.1 (two-component response regulator ARR22-like [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 8.6e-39
Identity = 92/129 (71.32%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 3   GSGERKK-----VSCLVVDDEEVNRYIHMCLLKKLNVE-VEEAENGKVAIDAFKGGASFD 62
           GSG+ K+     +S LVVDDE V RYIHM LL+KLNVE VE AE+GK A+DAF+ GASFD
Sbjct: 8   GSGDEKEKKKKIISALVVDDEAVVRYIHMSLLRKLNVEQVEAAESGKAAVDAFQCGASFD 67

Query: 63  LVLMDLEMPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTI 122
           LVLMDLEMP+MDG QATKEL RMGV+SKIVGVT +G  S +KAAFMEAGL  CL+KPLT+
Sbjct: 68  LVLMDLEMPLMDGAQATKELRRMGVESKIVGVTANGAISCEKAAFMEAGLDHCLMKPLTL 127

Query: 123 QNLHLLLQQ 126
           +NLH LLQQ
Sbjct: 128 ENLHSLLQQ 136

[Close]

BLAST of HG10006041 vs. NCBI nr
Match: KAE8009900.1 (hypothetical protein FH972_006306 [Carpinus fangiana])

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-28
Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MEGSGERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLM 60
           ++G+ ER K S LVVDD+   R IH   L K  V+V+ A NGK A+D ++ GA FDLVLM
Sbjct: 12  VDGTDER-KFSVLVVDDDATIRKIHSKFLSKFPVDVQVAVNGKEAVDLYRSGAFFDLVLM 71

Query: 61  DLEMPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLH 120
           DLEMPIM+GF+ATKEL  +G+KS IVGVT     SEKK AFMEAGL+DC  KPLTI+ + 
Sbjct: 72  DLEMPIMNGFEATKELRALGLKSLIVGVTSRSSDSEKK-AFMEAGLNDCYGKPLTIEMIK 131

Query: 121 LLLQQL 127
            LLQ+L
Sbjct: 132 SLLQEL 135

[Close]

BLAST of HG10006041 vs. NCBI nr
Match: KAA8519414.1 (hypothetical protein F0562_013711 [Nyssa sinensis])

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-28
Identity = 69/122 (56.56%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 5   GERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLMDLEM 64
           G  +K+  L+VDD+   R IH  LL K  VE + AENGK A+D ++ GASFDLV+MD+EM
Sbjct: 16  GGNQKICVLIVDDDRATRRIHSALLNKFGVETQVAENGKEAVDLYRSGASFDLVIMDMEM 75

Query: 65  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 124
           P+MDG  AT+EL RMGV S IVGVT  G  SEK+ AFM AGL DC +KPL    +  LLQ
Sbjct: 76  PVMDGPTATQELRRMGVNSMIVGVTSRGQDSEKQ-AFMRAGLDDCHVKPLNSNTIASLLQ 135

Query: 125 QL 127
           Q+
Sbjct: 136 QV 136

[Close]

BLAST of HG10006041 vs. NCBI nr
Match: XP_030475410.1 (two-component response regulator 24-like, partial [Syzygium oleosum])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 6   ERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEE--AENGKVAIDAFKGGASFDLVLMDLE 65
           ++KK+S L+VDD+   R IH  L+ ++ VEVE   AENGKVA+D F+ G SFDLVLMD E
Sbjct: 6   QQKKLSVLIVDDDSTIRTIHTILVNRVGVEVESKLAENGKVAVDLFRAGESFDLVLMDWE 65

Query: 66  MPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLL 125
           MP+M+G +ATKEL  MGV S IVGVT H   +E K  FM AGL DC  KPL+I+ L  +L
Sbjct: 66  MPVMNGIEATKELRNMGVSSMIVGVTSHSMDTE-KGTFMAAGLDDCYGKPLSIKILKNIL 125

Query: 126 QQLQ 128
           Q+++
Sbjct: 126 QKMK 128

[Close]

BLAST of HG10006041 vs. ExPASy Swiss-Prot
Match: F4JZT3 (Two-component response regulator 24 OS=Arabidopsis thaliana OX=3702 GN=ARR24 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 9   KVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLMDLEMPIMD 68
           K++ LVVDD  VN+ IH  LL +L ++ +   NGK A+D +  G ++DL+LMD++MPIM+
Sbjct: 17  KLTALVVDDSFVNQTIHQKLLNRLGIKNDVVTNGKEAVDVYCSGGNYDLILMDMDMPIMN 76

Query: 69  GFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQQL 127
           G QATK L  MG++SKI GVT      EKK  FMEAGL+D   KPLTI  L  +L +L
Sbjct: 77  GIQATKRLREMGIESKIAGVTTRANEGEKK-EFMEAGLNDFQEKPLTISKLLSILHKL 133

[Close]

BLAST of HG10006041 vs. ExPASy Swiss-Prot
Match: Q9M8Y4 (Two-component response regulator ARR22 OS=Arabidopsis thaliana OX=3702 GN=ARR22 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-20
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 6   ERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGG-ASFDLVLMDLEM 65
           ++K ++ L+VDD+ +NR +H  ++K +    + A+NG+ A+   + G ASFDL+LMD EM
Sbjct: 18  KKKLINVLIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEM 77

Query: 66  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 125
           P  DG   TK+L  M V S IVGVT      E++ AFMEAGL+ CL KPLT   +  L+ 
Sbjct: 78  PERDGVSTTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAKIFPLIS 137

Query: 126 QL 127
            L
Sbjct: 138 HL 139

[Close]

BLAST of HG10006041 vs. ExPASy Swiss-Prot
Match: Q75KW7 (Two-component response regulator ORR41 OS=Oryza sativa subsp. japonica OX=39947 GN=RR41 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-16
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 7   RKKVSCLVVDDEEVNRYIHMCLLKKL--NVEVEEAENGKVAIDAFKGGAS-FDLVLMDLE 66
           RK +  L+V+DEE+NR +    LK       V+EAENG+VA+   +  A+ +DLVLMD +
Sbjct: 3   RKMIRVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQ 62

Query: 67  MPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLL 126
           MP+MDG +AT+ +  MGV + IV V+  G  ++   AF+ AG  D   KPL+ + L ++L
Sbjct: 63  MPVMDGHEATRRIRGMGVTTPIVAVSSDGLPADVD-AFITAGADDFTSKPLSKEKLGVIL 122

Query: 127 QQLQ 128
            + +
Sbjct: 123 AKFR 125

[Close]

BLAST of HG10006041 vs. ExPASy Swiss-Prot
Match: Q54SK5 (Hybrid signal transduction histidine kinase M OS=Dictyostelium discoideum OX=44689 GN=dhkM PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-11
Identity = 46/123 (37.40%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 10   VSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFK-GGASFDLVLMDLEMPIMD 69
            V+ L+V+D  VN  I M +L+K N  VE ++NG++A++  K   +SFDL+LMD+ MP+MD
Sbjct: 2261 VNILLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERIKQSHSSFDLILMDIHMPVMD 2320

Query: 70   GFQATKELLRM----GVKS-KIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLL 127
            G   +K   +     G+K   I+ +T    T  K    +EAG ++ + KPL    L  LL
Sbjct: 2321 GITCSKLTRKFETEHGLKHLPIIALTADATTGHKNLC-LEAGCNEFMSKPLDYALLISLL 2380

[Close]

BLAST of HG10006041 vs. ExPASy Swiss-Prot
Match: Q56128 (Sensor histidine kinase RcsC OS=Salmonella typhi OX=90370 GN=rcsC PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 13  LVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLMDLEMPIMDGFQA 72
           LVVDD  +NR +    L  L  + + A +G  A++     A  D+VL D+ MP MDG++ 
Sbjct: 828 LVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNA-IDIVLSDVNMPNMDGYRL 887

Query: 73  TKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNL 120
           T+ + ++G+   +VGVT +   +E+K   +E+G+  CL KP+T+  L
Sbjct: 888 TQRIRQLGLTLPVVGVTANA-LAEEKQRCLESGMDSCLSKPVTLDAL 932

[Close]

BLAST of HG10006041 vs. ExPASy TrEMBL
Match: A0A6J1CTH4 (two-component response regulator ARR22-like OS=Momordica charantia OX=3673 GN=LOC111014146 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.2e-39
Identity = 92/129 (71.32%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 3   GSGERKK-----VSCLVVDDEEVNRYIHMCLLKKLNVE-VEEAENGKVAIDAFKGGASFD 62
           GSG+ K+     +S LVVDDE V RYIHM LL+KLNVE VE AE+GK A+DAF+ GASFD
Sbjct: 8   GSGDEKEKKKKIISALVVDDEAVVRYIHMSLLRKLNVEQVEAAESGKAAVDAFQCGASFD 67

Query: 63  LVLMDLEMPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTI 122
           LVLMDLEMP+MDG QATKEL RMGV+SKIVGVT +G  S +KAAFMEAGL  CL+KPLT+
Sbjct: 68  LVLMDLEMPLMDGAQATKELRRMGVESKIVGVTANGAISCEKAAFMEAGLDHCLMKPLTL 127

Query: 123 QNLHLLLQQ 126
           +NLH LLQQ
Sbjct: 128 ENLHSLLQQ 136

[Close]

BLAST of HG10006041 vs. ExPASy TrEMBL
Match: A0A5N6QUA5 (Response regulatory domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_006306 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MEGSGERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLM 60
           ++G+ ER K S LVVDD+   R IH   L K  V+V+ A NGK A+D ++ GA FDLVLM
Sbjct: 12  VDGTDER-KFSVLVVDDDATIRKIHSKFLSKFPVDVQVAVNGKEAVDLYRSGAFFDLVLM 71

Query: 61  DLEMPIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLH 120
           DLEMPIM+GF+ATKEL  +G+KS IVGVT     SEKK AFMEAGL+DC  KPLTI+ + 
Sbjct: 72  DLEMPIMNGFEATKELRALGLKSLIVGVTSRSSDSEKK-AFMEAGLNDCYGKPLTIEMIK 131

Query: 121 LLLQQL 127
            LLQ+L
Sbjct: 132 SLLQEL 135

[Close]

BLAST of HG10006041 vs. ExPASy TrEMBL
Match: A0A5J4ZNK8 (Response regulatory domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013711 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 69/122 (56.56%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 5   GERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLMDLEM 64
           G  +K+  L+VDD+   R IH  LL K  VE + AENGK A+D ++ GASFDLV+MD+EM
Sbjct: 16  GGNQKICVLIVDDDRATRRIHSALLNKFGVETQVAENGKEAVDLYRSGASFDLVIMDMEM 75

Query: 65  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 124
           P+MDG  AT+EL RMGV S IVGVT  G  SEK+ AFM AGL DC +KPL    +  LLQ
Sbjct: 76  PVMDGPTATQELRRMGVNSMIVGVTSRGQDSEKQ-AFMRAGLDDCHVKPLNSNTIASLLQ 135

Query: 125 QL 127
           Q+
Sbjct: 136 QV 136

[Close]

BLAST of HG10006041 vs. ExPASy TrEMBL
Match: A0A059D4I0 (Response regulatory domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02165 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.3e-26
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 7   RKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEE--AENGKVAIDAFKGGASFDLVLMDLEM 66
           +KK+S L+VDD+ + R IH  L+ ++ VEVE   AENGKVA+D F+ G SFD++LMD EM
Sbjct: 15  KKKLSVLIVDDDSMIRTIHTILVNRVGVEVESQVAENGKVAVDLFRSGESFDVILMDWEM 74

Query: 67  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 126
           P+M+G +ATKEL +MGV S IVGVT H    EK   FM AGL DC  KPL+I+ L  +LQ
Sbjct: 75  PVMNGIEATKELRKMGVSSMIVGVTSHSMDVEKD-TFMAAGLDDCYGKPLSIKILKNILQ 134

Query: 127 QLQ 128
           +++
Sbjct: 135 KMK 136

[Close]

BLAST of HG10006041 vs. ExPASy TrEMBL
Match: A0A059D410 (Response regulatory domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02166 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 7   RKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEE--AENGKVAIDAFKGGASFDLVLMDLEM 66
           +KK+S L+VDD  + R IH  L+ ++ VEVE   AENGKVA+D F+ G SFD+VLMD EM
Sbjct: 37  KKKLSVLIVDDNSMIRTIHNILVNRVGVEVESKVAENGKVAVDLFRSGESFDVVLMDWEM 96

Query: 67  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 126
           P+M+G +ATKEL  MGV S IVGVT H   +EK   FM AGL DC  KPL+I+ L  +LQ
Sbjct: 97  PVMNGIEATKELRNMGVDSMIVGVTSHSMDTEKD-TFMAAGLDDCYGKPLSIEILKNILQ 156

Query: 127 QLQ 128
           +++
Sbjct: 157 KMK 158

[Close]

BLAST of HG10006041 vs. TAIR 10
Match: AT5G26594.1 (response regulator 24 )

HSP 1 Score: 114.0 bits (284), Expect = 8.9e-26
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 9   KVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLMDLEMPIMD 68
           K++ LVVDD  VN+ IH  LL +L ++ +   NGK A+D +  G ++DL+LMD++MPIM+
Sbjct: 17  KLTALVVDDSFVNQTIHQKLLNRLGIKNDVVTNGKEAVDVYCSGGNYDLILMDMDMPIMN 76

Query: 69  GFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQQL 127
           G QATK L  MG++SKI GVT      EKK  FMEAGL+D   KPLTI  L  +L +L
Sbjct: 77  GIQATKRLREMGIESKIAGVTTRANEGEKK-EFMEAGLNDFQEKPLTISKLLSILHKL 133

[Close]

BLAST of HG10006041 vs. TAIR 10
Match: AT3G04280.1 (response regulator 22 )

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-21
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 6   ERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGG-ASFDLVLMDLEM 65
           ++K ++ L+VDD+ +NR +H  ++K +    + A+NG+ A+   + G ASFDL+LMD EM
Sbjct: 18  KKKLINVLIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEM 77

Query: 66  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 125
           P  DG   TK+L  M V S IVGVT      E++ AFMEAGL+ CL KPLT   +  L+ 
Sbjct: 78  PERDGVSTTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAKIFPLIS 137

Query: 126 QL 127
            L
Sbjct: 138 HL 139

[Close]

BLAST of HG10006041 vs. TAIR 10
Match: AT3G04280.2 (response regulator 22 )

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-21
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 6   ERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGG-ASFDLVLMDLEM 65
           ++K ++ L+VDD+ +NR +H  ++K +    + A+NG+ A+   + G ASFDL+LMD EM
Sbjct: 18  KKKLINVLIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEM 77

Query: 66  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 125
           P  DG   TK+L  M V S IVGVT      E++ AFMEAGL+ CL KPLT   +  L+ 
Sbjct: 78  PERDGVSTTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAKIFPLIS 137

Query: 126 QL 127
            L
Sbjct: 138 HL 139

[Close]

BLAST of HG10006041 vs. TAIR 10
Match: AT3G04280.3 (response regulator 22 )

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-21
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 6   ERKKVSCLVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGG-ASFDLVLMDLEM 65
           ++K ++ L+VDD+ +NR +H  ++K +    + A+NG+ A+   + G ASFDL+LMD EM
Sbjct: 18  KKKLINVLIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEM 77

Query: 66  PIMDGFQATKELLRMGVKSKIVGVTGHGPTSEKKAAFMEAGLHDCLIKPLTIQNLHLLLQ 125
           P  DG   TK+L  M V S IVGVT      E++ AFMEAGL+ CL KPLT   +  L+ 
Sbjct: 78  PERDGVSTTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAKIFPLIS 137

Query: 126 QL 127
            L
Sbjct: 138 HL 139

[Close]

BLAST of HG10006041 vs. TAIR 10
Match: AT2G01830.2 (CHASE domain containing histidine kinase protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 13   LVVDDEEVNRYIHMCLLKKLNVEVEEAENGKVAIDAFKGGASFDLVLMDLEMPIMDGFQA 72
            LVVDD  VNR +    LKK   EV  AE+G+VA+   +   +FD   MD++MP MDGF+A
Sbjct: 948  LVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEA 1007

Query: 73   TKELLRMGVKSK-IVGVTGHGPTSEKKAAFMEAGLHDCL--------IKPLTIQNLH 121
            T+++  M  ++K    +  H P     A  + A   +CL         KP   +NL+
Sbjct: 1008 TRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLY 1064

The following BLAST results are available for this feature:

BLAST of HG10006041 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889283.1	8.0e-45	79.84	two-component response regulator 24-like [Benincasa hispida]	[more]
XP_022144466.1	8.6e-39	71.32	two-component response regulator ARR22-like [Momordica charantia]	[more]
KAE8009900.1	5.2e-28	59.52	hypothetical protein FH972_006306 [Carpinus fangiana]	[more]
KAA8519414.1	5.2e-28	56.56	hypothetical protein F0562_013711 [Nyssa sinensis]	[more]
XP_030475410.1	2.2e-26	55.65	two-component response regulator 24-like, partial [Syzygium oleosum]	[more]

BLAST of HG10006041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JZT3	1.3e-24	50.85	Two-component response regulator 24 OS=Arabidopsis thaliana OX=3702 GN=ARR24 PE=...	[more]
Q9M8Y4	3.2e-20	44.26	Two-component response regulator ARR22 OS=Arabidopsis thaliana OX=3702 GN=ARR22 ...	[more]
Q75KW7	6.2e-16	40.32	Two-component response regulator ORR41 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q54SK5	2.7e-11	37.40	Hybrid signal transduction histidine kinase M OS=Dictyostelium discoideum OX=446...	[more]
Q56128	3.5e-11	35.51	Sensor histidine kinase RcsC OS=Salmonella typhi OX=90370 GN=rcsC PE=3 SV=2	[more]

BLAST of HG10006041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTH4	4.2e-39	71.32	two-component response regulator ARR22-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5N6QUA5	2.5e-28	59.52	Response regulatory domain-containing protein OS=Carpinus fangiana OX=176857 GN=...	[more]
A0A5J4ZNK8	2.5e-28	56.56	Response regulatory domain-containing protein OS=Nyssa sinensis OX=561372 GN=F05...	[more]
A0A059D4I0	5.3e-26	54.47	Response regulatory domain-containing protein OS=Eucalyptus grandis OX=71139 GN=...	[more]
A0A059D410	6.9e-26	55.28	Response regulatory domain-containing protein OS=Eucalyptus grandis OX=71139 GN=...	[more]

BLAST of HG10006041 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26594.1	8.9e-26	50.85	response regulator 24	[more]
AT3G04280.1	2.3e-21	44.26	response regulator 22	[more]
AT3G04280.2	2.3e-21	44.26	response regulator 22	[more]
AT3G04280.3	2.3e-21	44.26	response regulator 22	[more]
AT2G01830.2	1.1e-10	35.90	CHASE domain containing histidine kinase protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 10..123 e-value: 1.5E-24 score: 97.6
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 13..122 e-value: 6.4E-22 score: 77.8
IPR001789	Signal transduction response regulator, receiver domain	PROSITE	PS50110	RESPONSE_REGULATORY	coord: 11..127 score: 34.058235
None	No IPR available	GENE3D	3.40.50.2300		coord: 2..128 e-value: 7.1E-33 score: 115.4
None	No IPR available	PIRSR	PIRSR002937-1	PIRSR002937-1	coord: 7..126 e-value: 3.4E-9 score: 34.0
None	No IPR available	PANTHER	PTHR43228:SF12	TWO-COMPONENT RESPONSE REGULATOR 24	coord: 5..128
None	No IPR available	PANTHER	PTHR43228	TWO-COMPONENT RESPONSE REGULATOR	coord: 5..128
None	No IPR available	CDD	cd17546	REC_hyHK_CKI1_RcsC-like	coord: 13..116 e-value: 3.18128E-34 score: 112.948
IPR011006	CheY-like superfamily	SUPERFAMILY	52172	CheY-like	coord: 9..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006041.1	HG10006041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity