HG10005764 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005764
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr07: 5660581 .. 5661345 (+)
RNA-Seq Expression	HG10005764
Synteny	HG10005764

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATATTTTGTGATATTGAATGAAGCATTCTCAGCAGATTATACGCTTATCACTGCTGCATTGCTGGGATATGTTCAACCAATGAAACAGAGAGAATCTTTGAGAAGAAAACAAGTAAATGAAAAGGTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCCAACCCAATGAACTTTTTTCTTTTTTTTTTTTTTTTTTTGCTATACTTGTAGGGTTTTTATGAATGATAACATTGAGATTTCATGGATCCAAAAAGAAATGTCAGTAAATGAATTGTTAAATATTTTCATAATTCAGAGAACTTTTGTCTTGATTTGCATAGCATTTTGGAAGTTGTTGCTAATTTTTTTTTGAAAAAATATACAAGAGGTAGATGGGTTCAGTGGGTGCACCGGGGCATCTCAACTAGGTTGACACACCCTTAGCACCCTCATCATACCCCCAAGAACCAAAAGATCTTCATTGATATCAAAGATGGATACAACGAGAGCTAGAGAAAAGCTCGGAAATACACATGCTTACTGTGGAACAATATATCATTTGTATTTACATCTTCTCTACATCAGCTAACTGAGGTGCTTGATTTTACTATGAATCTCAAGCTTTCATCCACCAGGAATATCCTGATATCTAATATCACTGGTGCTGTTTTATGGTGTCTGTGGTTGGAGAGAAACGCCCGAGTCTTCAAAGGGGAAGAAAAACCAGCTACTCACCTCTGGGAAGATATTCTTTTCTATACAGGTCTTTAG

mRNA sequence

ATGCAATATTTTGTGATATTGAATGAAGCATTCTCAGCAGATTATACGCTTATCACTGCTGCATTGCTGGGATATGTTCAACCAATGAAACAGAGAGAATCTTTGAGAAGAAAACAAGTAAATGAAAAGCTAACTGAGGTGCTTGATTTTACTATGAATCTCAAGCTTTCATCCACCAGGAATATCCTGATATCTAATATCACTGGTGCTGTTTTATGGTGTCTGTGGTTGGAGAGAAACGCCCGAGTCTTCAAAGGGGAAGAAAAACCAGCTACTCACCTCTGGGAAGATATTCTTTTCTATACAGGTCTTTAG

Coding sequence (CDS)

ATGCAATATTTTGTGATATTGAATGAAGCATTCTCAGCAGATTATACGCTTATCACTGCTGCATTGCTGGGATATGTTCAACCAATGAAACAGAGAGAATCTTTGAGAAGAAAACAAGTAAATGAAAAGCTAACTGAGGTGCTTGATTTTACTATGAATCTCAAGCTTTCATCCACCAGGAATATCCTGATATCTAATATCACTGGTGCTGTTTTATGGTGTCTGTGGTTGGAGAGAAACGCCCGAGTCTTCAAAGGGGAAGAAAAACCAGCTACTCACCTCTGGGAAGATATTCTTTTCTATACAGGTCTTTAG

Protein sequence

MQYFVILNEAFSADYTLITAALLGYVQPMKQRESLRRKQVNEKLTEVLDFTMNLKLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL

Homology

[Close]

BLAST of HG10005764 vs. NCBI nr
Match: TYK10356.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55  KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
           K  + +NI++ N   + LW +WLERNAR+F G+EK    LWEDI    GL
Sbjct: 811 KQKTKKNIILFNTYASALWNIWLERNARIFNGKEKTVADLWEDIKALAGL 860

[Close]

BLAST of HG10005764 vs. NCBI nr
Match: TYK02997.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 60  RNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
           +N+++ N   + LW +WLERNAR+F G+EK A  +WEDI    GL
Sbjct: 231 KNVILFNTYASALWNIWLERNARIFNGKEKTAAEIWEDIKALAGL 275

[Close]

BLAST of HG10005764 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-05
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55   KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
            K  + +N+++ N   + LW +WLERNAR+F G+EK    +WEDI    GL
Sbjct: 1047 KQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGL 1096

[Close]

BLAST of HG10005764 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-05
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55  KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
           K  + +N+++ N   + LW +WLERNAR+F G+EK    +WEDI    GL
Sbjct: 471 KQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGL 520

[Close]

BLAST of HG10005764 vs. NCBI nr
Match: TYK14764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-05
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55  KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
           K  + +N+++ N   + LW +WLERNAR+F G+EK    +WEDI    GL
Sbjct: 174 KQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGL 223

[Close]

BLAST of HG10005764 vs. ExPASy TrEMBL
Match: A0A5D3CJ08 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00340 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55  KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
           K  + +NI++ N   + LW +WLERNAR+F G+EK    LWEDI    GL
Sbjct: 811 KQKTKKNIILFNTYASALWNIWLERNARIFNGKEKTVADLWEDIKALAGL 860

[Close]

BLAST of HG10005764 vs. ExPASy TrEMBL
Match: A0A5D3BU35 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00910 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 60  RNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
           +N+++ N   + LW +WLERNAR+F G+EK A  +WEDI    GL
Sbjct: 231 KNVILFNTYASALWNIWLERNARIFNGKEKTAAEIWEDIKALAGL 275

[Close]

BLAST of HG10005764 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55   KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
            K  + +N+++ N   + LW +WLERNAR+F G+EK    +WEDI    GL
Sbjct: 984  KQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGL 1033

[Close]

BLAST of HG10005764 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55   KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
            K  + +N+++ N   + LW +WLERNAR+F G+EK    +WEDI    GL
Sbjct: 1047 KQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGL 1096

[Close]

BLAST of HG10005764 vs. ExPASy TrEMBL
Match: A0A5D3CUY9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46132G00010 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 55  KLSSTRNILISNITGAVLWCLWLERNARVFKGEEKPATHLWEDILFYTGL 105
           K  + +N+++ N   + LW +WLERNAR+F G+EK    +WEDI    GL
Sbjct: 174 KQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGL 223

The following BLAST results are available for this feature:

BLAST of HG10005764 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10356.1	3.9e-05	48.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK02997.1	5.1e-05	48.89	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	6.6e-05	44.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0040037.1	6.6e-05	44.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK14764.1	6.6e-05	44.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of HG10005764 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005764 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJ08	1.9e-05	48.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BU35	2.4e-05	48.89	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DM72	3.2e-05	44.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	3.2e-05	44.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CUY9	3.2e-05	44.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of HG10005764 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005764.1	HG10005764.1	mRNA