HG10005752 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005752
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Histone H2B
Location	Chr07: 5451144 .. 5451383 (-)
RNA-Seq Expression	HG10005752
Synteny	HG10005752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAGTAAGAAAAAAAAAAGCAATCAATTTGGTGAACTTAATTAAGGAGAGAATTAGAGAATCAGAATGTGAAATTTTCAAGGTTTTGGAGCAAGTTCATCCTGACATTGGAATCTCCAACAGGGCAATAGACATAATAATGAACAGTTTCATCAACGATATCTTCAAGAAAATTGCTCAAGAGGCTTCGAAATTGGCAAGATATAACAAGAAATCTATGAGTGTATCGAACTAA

mRNA sequence

ATGGTGAAAGTAAGAAAAAAAAAAGCAATCAATTTGGTGAACTTAATTAAGGAGAGAATTAGAGAATCAGAATGTGAAATTTTCAAGGTTTTGGAGCAAGTTCATCCTGACATTGGAATCTCCAACAGGGCAATAGACATAATAATGAACAGTTTCATCAACGATATCTTCAAGAAAATTGCTCAAGAGGCTTCGAAATTGGCAAGATATAACAAGAAATCTATGAGTGTATCGAACTAA

Coding sequence (CDS)

ATGGTGAAAGTAAGAAAAAAAAAAGCAATCAATTTGGTGAACTTAATTAAGGAGAGAATTAGAGAATCAGAATGTGAAATTTTCAAGGTTTTGGAGCAAGTTCATCCTGACATTGGAATCTCCAACAGGGCAATAGACATAATAATGAACAGTTTCATCAACGATATCTTCAAGAAAATTGCTCAAGAGGCTTCGAAATTGGCAAGATATAACAAGAAATCTATGAGTGTATCGAACTAA

Protein sequence

MVKVRKKKAINLVNLIKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKKSMSVSN

Homology

[Close]

BLAST of HG10005752 vs. NCBI nr
Match: VFQ76774.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 16 IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
          +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Sbjct: 43 VKKSIETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASRLARYNKK 99

[Close]

BLAST of HG10005752 vs. NCBI nr
Match: VFQ76699.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 16  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Sbjct: 44  VKKSIETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASRLARYNKK 100

[Close]

BLAST of HG10005752 vs. NCBI nr
Match: VFQ76773.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Sbjct: 58  KKSVETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASKLARYNKK 113

[Close]

BLAST of HG10005752 vs. NCBI nr
Match: XP_039144695.1 (histone H2B-like [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 16 IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
          IK+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Sbjct: 40 IKKGVETYKMYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASRLARYNKK 96

[Close]

BLAST of HG10005752 vs. NCBI nr
Match: VFQ76700.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Sbjct: 58  KKSVETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASKLARYNKK 113

[Close]

BLAST of HG10005752 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-13
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEASKLARYNKK
Sbjct: 57  KKSVETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFEKLAQEASKLARYNKK 112

[Close]

BLAST of HG10005752 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-13
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 16  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           +K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEAS+LARYNKK
Sbjct: 53  VKKSVETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFEKLAQEASRLARYNKK 109

[Close]

BLAST of HG10005752 vs. ExPASy Swiss-Prot
Match: Q9LQQ4 (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-13
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQE+SKLARYNKK
Sbjct: 55  KKNVETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFEKLAQESSKLARYNKK 110

[Close]

BLAST of HG10005752 vs. ExPASy Swiss-Prot
Match: Q9SI96 (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-13
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 3   KVRKKKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFK 62
           K+ K+     V   K+R+++S    +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+
Sbjct: 40  KLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFE 99

Query: 63  KIAQEASKLARYNKK 74
           K+AQEASKLARYNKK
Sbjct: 100 KLAQEASKLARYNKK 113

[Close]

BLAST of HG10005752 vs. ExPASy Swiss-Prot
Match: O65819 (Histone H2B.3 (Fragment) OS=Solanum lycopersicum OX=4081 GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 17 KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
          K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEAS+LARYNKK
Sbjct: 44 KKAVETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFEKLAQEASRLARYNKK 99

[Close]

BLAST of HG10005752 vs. ExPASy TrEMBL
Match: A0A484LKF1 (Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18550 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 16 IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
          +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Sbjct: 43 VKKSIETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASRLARYNKK 99

[Close]

BLAST of HG10005752 vs. ExPASy TrEMBL
Match: A0A484LKG6 (Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18475 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 16  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Sbjct: 44  VKKSIETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASRLARYNKK 100

[Close]

BLAST of HG10005752 vs. ExPASy TrEMBL
Match: A0A484LJW9 (Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18476 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Sbjct: 58  KKSVETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASKLARYNKK 113

[Close]

BLAST of HG10005752 vs. ExPASy TrEMBL
Match: A0A484LJX0 (Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18549 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Sbjct: 58  KKSVETYKIYIFKVLKQVHPDIGISSKAM-VIMNSFINDIFEKLAQEASKLARYNKK 113

[Close]

BLAST of HG10005752 vs. ExPASy TrEMBL
Match: A0A3P6CZA8 (Histone H2B OS=Brassica oleracea OX=3712 GN=BOLC4T27315H PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 7   KKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQ 66
           K+AI   +  K+R ++S    +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQ
Sbjct: 47  KEAIGATDKKKKRSKKSIETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFEKLAQ 106

Query: 67  EASKLARYNKK 74
           EASKLARYNKK
Sbjct: 107 EASKLARYNKK 116

[Close]

BLAST of HG10005752 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 7.4e-15
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEASKLARYNKK
Sbjct: 57  KKSVETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFEKLAQEASKLARYNKK 112

[Close]

BLAST of HG10005752 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-14
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQE+SKLARYNKK
Sbjct: 55  KKNVETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFEKLAQESSKLARYNKK 110

[Close]

BLAST of HG10005752 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-14
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 3   KVRKKKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFK 62
           K+ K+     V   K+R+++S    +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+
Sbjct: 40  KLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMG-IMNSFINDIFE 99

Query: 63  KIAQEASKLARYNKK 74
           K+AQEASKLARYNKK
Sbjct: 100 KLAQEASKLARYNKK 113

[Close]

BLAST of HG10005752 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-14
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ +   +  IFKVL+QVHPD+GIS +A+  IMNSFINDIF+K+AQE+SKLARYNKK
Sbjct: 46  KKSVETYKIYIFKVLKQVHPDVGISGKAMG-IMNSFINDIFEKLAQESSKLARYNKK 101

[Close]

BLAST of HG10005752 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-14
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 17  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK 74
           K+ I   +  IFKVL+QVHPDIGIS +A+  IMNSFINDIF+K+AQE+S+LARYNKK
Sbjct: 45  KKNIETYKIYIFKVLKQVHPDIGISGKAMG-IMNSFINDIFEKLAQESSRLARYNKK 100

The following BLAST results are available for this feature:

BLAST of HG10005752 vs. NCBI nr


Match Name	E-value	Identity	Description
VFQ76774.1	2.7e-11	68.97	unnamed protein product [Cuscuta campestris]	[more]
VFQ76699.1	2.7e-11	68.97	unnamed protein product [Cuscuta campestris]	[more]
VFQ76773.1	3.6e-11	70.18	unnamed protein product [Cuscuta campestris]	[more]
XP_039144695.1	3.6e-11	68.97	histone H2B-like [Dioscorea cayenensis subsp. rotundata]	[more]
VFQ76700.1	3.6e-11	70.18	unnamed protein product [Cuscuta campestris]	[more]

BLAST of HG10005752 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40283	1.0e-13	70.18	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
O22582	1.4e-13	67.24	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q9LQQ4	1.8e-13	68.42	Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3	[more]
Q9SI96	1.8e-13	60.00	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]
O65819	2.3e-13	68.42	Histone H2B.3 (Fragment) OS=Solanum lycopersicum OX=4081 GN=H2B-3 PE=2 SV=1	[more]

BLAST of HG10005752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A484LKF1	1.3e-11	68.97	Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18550 PE=3 SV=1	[more]
A0A484LKG6	1.3e-11	68.97	Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18475 PE=3 SV=1	[more]
A0A484LJW9	1.7e-11	70.18	Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18476 PE=3 SV=1	[more]
A0A484LJX0	1.7e-11	70.18	Histone H2B OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS18549 PE=3 SV=1	[more]
A0A3P6CZA8	2.3e-11	63.38	Histone H2B OS=Brassica oleracea OX=3712 GN=BOLC4T27315H PE=3 SV=1	[more]

BLAST of HG10005752 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	7.4e-15	70.18	Histone superfamily protein	[more]
AT1G07790.1	1.3e-14	68.42	Histone superfamily protein	[more]
AT2G28720.1	1.3e-14	60.00	Histone superfamily protein	[more]
AT2G37470.1	2.8e-14	66.67	Histone superfamily protein	[more]
AT3G53650.1	2.8e-14	68.42	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 65..79 score: 44.02 coord: 23..41 score: 60.5
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 13..78 e-value: 5.9E-6 score: 35.8
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 14..78
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 27..73 e-value: 4.6E-6 score: 27.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..79 e-value: 1.4E-20 score: 75.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..74
None	No IPR available	PANTHER	PTHR23428:SF262	HISTONE H2B.11	coord: 14..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005752.1	HG10005752.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity