HG10005723 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005723
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S31, mitochondrial
Location	Chr07: 5100462 .. 5100728 (+)
RNA-Seq Expression	HG10005723
Synteny	HG10005723

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCGCAGTGGTGCGGCGCAGTAGCTAAGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTGCCGATCCTCTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAATATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAGTTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGATGGCGCAGTGGTGCGGCGCAGTAGCTAAGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTGCCGATCCTCTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAATATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAGTTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGATGGCGCAGTGGTGCGGCGCAGTAGCTAAGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTGCCGATCCTCTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAATATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAGTTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI

Homology

[Close]

BLAST of HG10005723 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588415.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022258.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of HG10005723 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MAQWCGA+AK VMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of HG10005723 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYK22378.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMAQWCGAVA+GV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of HG10005723 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          M QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

[Close]

BLAST of HG10005723 vs. NCBI nr
Match: XP_022969451.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MAQWCGA+AK VMAAERRSPS TSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSPTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of HG10005723 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.5e-24
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA  QWCGA+ + +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of HG10005723 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-20
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD+VEVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]

BLAST of HG10005723 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 13 GVMAAERRSPSLTSSMAVEGLVPIL-CGRGDKKTKKGKIFKGSYGNARPKKEKK 66
          GV  +   + SL+SS++    +P++ CGRGD+KT KGK F  S+GNARPK + K
Sbjct: 28 GVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]

BLAST of HG10005723 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTP 81
          + CGRGD+KT KGK F  S+GNARP+ + K  R  ++V VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

[Close]

BLAST of HG10005723 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.5e-40
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of HG10005723 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MAQWCGA+AK VMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of HG10005723 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMAQWCGAVA+GV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of HG10005723 vs. ExPASy TrEMBL
Match: A0A6J1I644 (30S ribosomal protein S31, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111470248 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          M QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

[Close]

BLAST of HG10005723 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMAQWCGAVA+GV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of HG10005723 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-25
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA  QWCGA+ + +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of HG10005723 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-05
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTP 81
          + CGRGD+KT KGK F  S+GNARP+ + K  R  ++V VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

The following BLAST results are available for this feature:

BLAST of HG10005723 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933003.1	1.6e-39	96.59	30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30...	[more]
XP_022952601.1	2.9e-38	96.51	30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata]	[more]
XP_008448047.1	1.5e-37	92.05	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1...	[more]
XP_022971575.1	1.5e-37	95.35	30S ribosomal protein S31, mitochondrial [Cucurbita maxima]	[more]
XP_022969451.1	1.9e-37	95.35	30S ribosomal protein S31, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of HG10005723 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJU8	9.5e-24	58.16	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g...	[more]
P47909	2.9e-20	84.91	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P47910	2.6e-05	48.15	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
O80439	3.8e-04	51.11	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]

BLAST of HG10005723 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3E9	7.5e-40	96.59	30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1GKP4	1.4e-38	96.51	30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7SX60	7.0e-38	92.05	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1I644	7.0e-38	95.35	30S ribosomal protein S31, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A1S3BI88	7.0e-38	92.05	30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344...	[more]

BLAST of HG10005723 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21290.1	6.8e-25	58.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G38140.1	2.7e-05	51.11	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 32..80 e-value: 7.1E-11 score: 42.2
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 39..62 e-value: 1.8E-12 score: 45.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..72
None	No IPR available	PANTHER	PTHR34550:SF3	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..88
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005723.1	HG10005723.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome