HG10005679 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005679
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	EF-Hand containing protein
Location	Chr07: 4787377 .. 4787811 (-)
RNA-Seq Expression	HG10005679
Synteny	HG10005679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTGCTTCTTCACCACCTTCTTCATCATCTTCACCATTGAAACGACCTACTGGACAGGTTCTGGACGGTTCAGAAATTATGGAGTTGGTTGCCAACAACCACGTCTTCTCCTCTTTCGTCGACCATAAGTTTCACGAGCTCGACACCGACAAAGACGGCAAACTTTCCCTCAAAGAACTTCACCCTGCCGTCGCCGACATTGGTGCCGCTCTTGGCCTTCCTCCTCAAGGCACTTCCCTTGATTCCGACAACATTTACTCTGAGGTTTCCTTTCCTTTCCTTTCCTTCCTCCTCTTCTTCTTATTCTTCATTAGGTTTTCTTCATTATTTATGGCCGAATTACTTGGATTGGAATTTCTGAATGCGGATTTCCTGATAACGACAAGAACTGTCCCTATTTGTGTAGTTTGTTGCTTCTGTAGTTGCTGA

mRNA sequence

ATGGATTCTGCTTCTTCACCACCTTCTTCATCATCTTCACCATTGAAACGACCTACTGGACAGGTTCTGGACGGTTCAGAAATTATGGAGTTGGTTGCCAACAACCACGTCTTCTCCTCTTTCGTCGACCATAAGTTTCACGAGCTCGACACCGACAAAGACGGCAAACTTTCCCTCAAAGAACTTCACCCTGCCGTCGCCGACATTGGTGCCGCTCTTGGCCTTCCTCCTCAAGGCACTTCCCTTGATTCCGACAACATTTACTCTGAGGTTTCCTTTCCTTTCCTTTCCTTCCTCCTCTTCTTCTTATTCTTCATTAGGTTTTCTTCATTATTTATGGCCGAATTACTTGGATTGGAATTTCTGAATGCGGATTTCCTGATAACGACAAGAACTGTCCCTATTTGTGTAGTTTGTTGCTTCTGTAGTTGCTGA

Coding sequence (CDS)

ATGGATTCTGCTTCTTCACCACCTTCTTCATCATCTTCACCATTGAAACGACCTACTGGACAGGTTCTGGACGGTTCAGAAATTATGGAGTTGGTTGCCAACAACCACGTCTTCTCCTCTTTCGTCGACCATAAGTTTCACGAGCTCGACACCGACAAAGACGGCAAACTTTCCCTCAAAGAACTTCACCCTGCCGTCGCCGACATTGGTGCCGCTCTTGGCCTTCCTCCTCAAGGCACTTCCCTTGATTCCGACAACATTTACTCTGAGGTTTCCTTTCCTTTCCTTTCCTTCCTCCTCTTCTTCTTATTCTTCATTAGGTTTTCTTCATTATTTATGGCCGAATTACTTGGATTGGAATTTCTGAATGCGGATTTCCTGATAACGACAAGAACTGTCCCTATTTGTGTAGTTTGTTGCTTCTGTAGTTGCTGA

Protein sequence

MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLKELHPAVADIGAALGLPPQGTSLDSDNIYSEVSFPFLSFLLFFLFFIRFSSLFMAELLGLEFLNADFLITTRTVPICVVCCFCSC

Homology

[Close]

BLAST of HG10005679 vs. NCBI nr
Match: XP_038886819.1 (uncharacterized protein LOC120077051 isoform X1 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MDSASSPP-SSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSL 60
          MDSASSPP SSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSL
Sbjct: 1  MDSASSPPSSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSL 60

Query: 61 KELHPAVADIGAALGLPPQGTSLDSDNIYSEV 92
          KELHPAVA IGAALGLPPQGTSLDSDNIYSEV
Sbjct: 61 KELHPAVAHIGAALGLPPQGTSLDSDNIYSEV 92

[Close]

BLAST of HG10005679 vs. NCBI nr
Match: XP_023553715.1 (uncharacterized protein LOC111811192 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-38
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MD+ SS PSSSSSPLKR TGQ+LDGSEIMELVAN HVFSSFVDHKFHELDTDKDGKLSLK
Sbjct: 1  MDTVSSSPSSSSSPLKRSTGQILDGSEIMELVANKHVFSSFVDHKFHELDTDKDGKLSLK 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEV 92
          ELHPAVADIGAALGLPPQGTSLDSDNIYSEV
Sbjct: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEV 91

[Close]

BLAST of HG10005679 vs. NCBI nr
Match: XP_022969499.1 (uncharacterized protein LOC111468478 isoform X1 [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 3.7e-38
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MD+ SS PSSSSSPLKR TGQ+LDGSEIMELVAN HVFSSFVDHKFHELDTDKDGKLSLK
Sbjct: 1  MDTVSSSPSSSSSPLKRSTGQILDGSEIMELVANKHVFSSFVDHKFHELDTDKDGKLSLK 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEVSFPF 96
          ELHPAVADIGAALGLPPQGTSLDSDNIYSEV   F
Sbjct: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEVLSEF 95

[Close]

BLAST of HG10005679 vs. NCBI nr
Match: KAG7011745.1 (hypothetical protein SDJN02_26651, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 2.4e-37
Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1   MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
           MD+ SS PSSSSSPLKR TGQ+LDGSEIMELVAN HVFSSFVDHKFHELDTDKDGKLSLK
Sbjct: 36  MDTVSSSPSSSSSPLKRSTGQILDGSEIMELVANKHVFSSFVDHKFHELDTDKDGKLSLK 95

Query: 61  ELHPAVADIGAALGLPPQGTSLDSDNIYSEVSFPF 96
           ELHPAVADIGAALGLPPQGTS DSDNIYSEV   F
Sbjct: 96  ELHPAVADIGAALGLPPQGTSHDSDNIYSEVLSEF 130

[Close]

BLAST of HG10005679 vs. NCBI nr
Match: XP_022952464.1 (uncharacterized protein LOC111455144 isoform X1 [Cucurbita moschata] >KAG6572094.1 hypothetical protein SDJN03_28822, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 2.4e-37
Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MD+ SS PSSSSSPLKR TGQ+LDGSEIMELVAN HVFSSFVDHKFHELDTDKDGKLSLK
Sbjct: 1  MDTVSSSPSSSSSPLKRSTGQILDGSEIMELVANKHVFSSFVDHKFHELDTDKDGKLSLK 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEVSFPF 96
          ELHPAVADIGAALGLPPQGTS DSDNIYSEV   F
Sbjct: 61 ELHPAVADIGAALGLPPQGTSHDSDNIYSEVLSEF 95

[Close]

BLAST of HG10005679 vs. ExPASy TrEMBL
Match: A0A6J1I2S7 (uncharacterized protein LOC111468478 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468478 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.8e-38
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MD+ SS PSSSSSPLKR TGQ+LDGSEIMELVAN HVFSSFVDHKFHELDTDKDGKLSLK
Sbjct: 1  MDTVSSSPSSSSSPLKRSTGQILDGSEIMELVANKHVFSSFVDHKFHELDTDKDGKLSLK 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEVSFPF 96
          ELHPAVADIGAALGLPPQGTSLDSDNIYSEV   F
Sbjct: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEVLSEF 95

[Close]

BLAST of HG10005679 vs. ExPASy TrEMBL
Match: A0A6J1GLS8 (uncharacterized protein LOC111455144 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455144 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.2e-37
Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MD+ SS PSSSSSPLKR TGQ+LDGSEIMELVAN HVFSSFVDHKFHELDTDKDGKLSLK
Sbjct: 1  MDTVSSSPSSSSSPLKRSTGQILDGSEIMELVANKHVFSSFVDHKFHELDTDKDGKLSLK 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEVSFPF 96
          ELHPAVADIGAALGLPPQGTS DSDNIYSEV   F
Sbjct: 61 ELHPAVADIGAALGLPPQGTSHDSDNIYSEVLSEF 95

[Close]

BLAST of HG10005679 vs. ExPASy TrEMBL
Match: A0A6J1EP36 (uncharacterized protein LOC111435264 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435264 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.8e-36
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MDSASSPPSSSSSPLKRPTGQVLDGSEIMELV NNHVFSSFV HKFHELDTDKDGKLSL+
Sbjct: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVGNNHVFSSFVHHKFHELDTDKDGKLSLQ 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEV 92
          ELHP +ADIGAALGLPP  TS  SD IYSEV
Sbjct: 61 ELHPTIADIGAALGLPPPATSSGSDGIYSEV 91

[Close]

BLAST of HG10005679 vs. ExPASy TrEMBL
Match: A0A6J1JLV7 (uncharacterized protein LOC111486388 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486388 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.8e-36
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MDSASSPPSSSSSP+KRPTGQVLDGSEIMELV NNHVFSSFV HKFHELDTDKDGKLSL+
Sbjct: 1  MDSASSPPSSSSSPMKRPTGQVLDGSEIMELVGNNHVFSSFVHHKFHELDTDKDGKLSLQ 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEV 92
          ELHP +ADIGAALGLPP  TS  SD IYSEV
Sbjct: 61 ELHPTIADIGAALGLPPPATSSGSDGIYSEV 91

[Close]

BLAST of HG10005679 vs. ExPASy TrEMBL
Match: A0A0A0K5V6 (EF-Hand containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G009170 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.2e-32
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MDSASSPPSSSSSPLKRPTGQVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLK 60
          MD   S PSSSS P      QVLDGSEIMELVANNH+FSSFVDHKFH+LDTDKDGKLSL+
Sbjct: 1  MDPLPSSPSSSSKP------QVLDGSEIMELVANNHLFSSFVDHKFHDLDTDKDGKLSLQ 60

Query: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSEV 92
          ELHPAVADIGAALGLPPQGTSLDSDNIYS+V
Sbjct: 61 ELHPAVADIGAALGLPPQGTSLDSDNIYSQV 85

[Close]

BLAST of HG10005679 vs. TAIR 10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-23
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 21 QVLDGSEIMELVANNHVFSSFVDHKFHELDTDKDGKLSLKELHPAVADIGAALGLPPQGT 80
          QVLDGS+I+ELV N  VF  FV+ KF +LD D+DGKLS+ EL PAVADIGAALGLP QGT
Sbjct: 13 QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGT 72

Query: 81 SLDSDNIYSEV 92
          S DSD+IYSEV
Sbjct: 73 SPDSDHIYSEV 83

The following BLAST results are available for this feature:

BLAST of HG10005679 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886819.1	1.1e-39	97.83	uncharacterized protein LOC120077051 isoform X1 [Benincasa hispida]	[more]
XP_023553715.1	2.2e-38	93.41	uncharacterized protein LOC111811192 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022969499.1	3.7e-38	90.53	uncharacterized protein LOC111468478 isoform X1 [Cucurbita maxima]	[more]
KAG7011745.1	2.4e-37	89.47	hypothetical protein SDJN02_26651, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022952464.1	2.4e-37	89.47	uncharacterized protein LOC111455144 isoform X1 [Cucurbita moschata] >KAG6572094...	[more]

BLAST of HG10005679 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2S7	1.8e-38	90.53	uncharacterized protein LOC111468478 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GLS8	1.2e-37	89.47	uncharacterized protein LOC111455144 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EP36	2.8e-36	89.01	uncharacterized protein LOC111435264 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JLV7	4.8e-36	87.91	uncharacterized protein LOC111486388 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0K5V6	7.2e-32	83.52	EF-Hand containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G009170 PE=4 SV=1	[more]

BLAST of HG10005679 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38810.2	3.6e-23	73.24	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 12..92
None	No IPR available	PANTHER	PTHR34574:SF2	CALCIUM-BINDING EF-HAND FAMILY PROTEIN	coord: 12..92
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 50..62
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 37..72 score: 10.998585
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 23..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005679.1	HG10005679.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding