Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGTGCTTCGAGACTATTTGGGTCGGTATTGCTTGTTGAACTGAAATTCATCCCTCTATGCAATGAGGTGAAACTTCTTGAAGCGATAACCGGTTGTTTTCGGCTAGAGAGTATTTCTTCACTCCATCTTTTCAATCTTTTAGTTGAATCTGACTGCTTGGAGGTTGTTAATTTGTTGGATGATGAGGTGATAGACATTTCTAAAGTCTCTTTCTTTATTTACGAGGCTAAGGGTTGGGATTATGATTTGGGCGATGTTTCATTCTCTCAATTTCGTCGGAGCCAAAATGCATTGGCACACTATGTCGCACATGAGGATTTGGGAGAGCATGAGTCTTCCATGATTTAA mRNA sequence ATGGGTGCTTCGAGACTATTTGGGTCGGTATTGCTTGTTGAACTGAAATTCATCCCTCTATGCAATGAGGTGAAACTTCTTGAAGCGATAACCGGTTGTTTTCGGCTAGAGAGTATTTCTTCACTCCATCTTTTCAATCTTTTAGTTGAATCTGACTGCTTGGAGGTTGTTAATTTGTTGGATGATGAGGTGATAGACATTTCTAAAGTCTCTTTCTTTATTTACGAGGCTAAGGGTTGGGATTATGATTTGGGCGATGTTTCATTCTCTCAATTTCGTCGGAGCCAAAATGCATTGGCACACTATGTCGCACATGAGGATTTGGGAGAGCATGAGTCTTCCATGATTTAA Coding sequence (CDS) ATGGGTGCTTCGAGACTATTTGGGTCGGTATTGCTTGTTGAACTGAAATTCATCCCTCTATGCAATGAGGTGAAACTTCTTGAAGCGATAACCGGTTGTTTTCGGCTAGAGAGTATTTCTTCACTCCATCTTTTCAATCTTTTAGTTGAATCTGACTGCTTGGAGGTTGTTAATTTGTTGGATGATGAGGTGATAGACATTTCTAAAGTCTCTTTCTTTATTTACGAGGCTAAGGGTTGGGATTATGATTTGGGCGATGTTTCATTCTCTCAATTTCGTCGGAGCCAAAATGCATTGGCACACTATGTCGCACATGAGGATTTGGGAGAGCATGAGTCTTCCATGATTTAA Protein sequence MGASRLFGSVLLVELKFIPLCNEVKLLEAITGCFRLESISSLHLFNLLVESDCLEVVNLLDDEVIDISKVSFFIYEAKGWDYDLGDVSFSQFRRSQNALAHYVAHEDLGEHESSMI
Homology
BLAST of HG10005667 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida]) HSP 1 Score: 87.8 bits (216), Expect = 6.6e-14 Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 0
Query: 10 VLLVELKFIPLCNEVKLLEAITGCFRLESISSLHLFNLLVESDCL-EVVNLLDDEVIDIS 69
V + LKF+ C +V +LEAI CF LE +SS+ + N++VESDCL EV+NLL+D+V+D+S
Sbjct: 105 VCMAGLKFVLRCQKVNILEAIAICFGLEILSSIDISNIMVESDCLEEVINLLNDDVVDLS 164
Query: 70 KVSFFIYEAKGWDYDLGDVSFSQFRRSQNALAH 102
+VSF EAK +LG +SFS RR +N LA+
Sbjct: 165 EVSFCSEEAKDRGGNLGVISFSHVRRYRNVLAY 197
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038886170.1 | 6.6e-14 | 51.61 | uncharacterized protein LOC120076417 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002156 | Ribonuclease H domain | PFAM | PF13456 | RVT_3 | coord: 36..105
e-value: 3.4E-5
score: 23.6 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
|
