HG10005650 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005650
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 4577391 .. 4579751 (-)
RNA-Seq Expression	HG10005650
Synteny	HG10005650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTTTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGCGAAGATGACAATAGTAGAAAGGCAAGAAAAATTCAAAGAGATGGTATTGTTGTTGGCGAGGCGCCTGCAAAGGTAAAGAGTAAGAAATGGCATCGACGAAGACAGGTAGGCGGTAAGGAGAGAAAGACGGTGTCATCGTCGAGGTTGCCACGATCACAAAGAGGGAGAGCTGAGTTGGGTGGTTGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAGAAGGTATGCAAAGGGTAAATAAAAATGGAAGAAGCCCCTATAAGAAACTTTTGCTTCAAGTGAAGATTTGTATTCTTTTTACATTCTTTTTAAAAGGGATATCTGTGTAACTTATATCACTTTTAACTAATATTTATACAATGATTTAATTACAAATTTAGGAACAAACTTTTAAGTTTGTATTGTGTCTCATAAATTTAATTTAATTTTTTTTTAATTTTATCTCTAATAGATATTTTAACTTTAAAAGTATCTTATAAATCTTAAAATTCTTAATTTTGTATCTGATAAATTTATGACATGTTAGATGTTATTTAATTTTAAGAAACCTATTAGATAAAAATTTAAAAGTTCACGAGGACTTTGATTTTTATTTTATTTTTTTAAATTGTCAAATAGGGCTTGTTTGAAAGTTTGAAAATTTAAGGTTCTATTAGACACTTTCAAAGTTTTTATACGTGTTAGATGCAAAAATTTAAAGATTAGTTTAAATTTTTGTGTCAATCGGTGATAATTTTTTTTTATAGATCAACTTAATAAAAAAAATTATACATGTAGATCAATAAATTGATCTGAAAGCAACCTTTTTTAATAAGTTATTACATAATAAAAATAAATACTTAATTTTGATGAGATTTTTCATGATAGGGACTAAATTGTTACAAGTTTCAAAATATAAAGACTGATTTTATGGTTTATACGTTTGGAAAGACAGTAACTAAATTGTTGTGTAGTTTAAGGACCAAAAGTGTTTTTTTCACCGAATTATATTTTCTGGGCCGGCTGGAAAATGGCTAATATCAAGAGAAAAAGACTTGGGCATCGATATAATGGTGTTGAGCAAAGTCTTTGTTATGTGACAATGAGCATATTTGGGATAATATATGATGTGATAAGGAGCTAGAATGATAATTACACACGTCATTGGAAATTGACATGTAATTTAGTAGGAGCAGAAGAGACCAAATCAAATTGGAAATCGAGTCGAACTGAATTGATTCAACTTAGTTCGATTTACAAAATTGTGAGGAAATTTGATGAAAATAAAAAATGCAGCCTTTCTGATTATTGTATAGTTTATTTAATTCTTAATTTTATGTACTTCAAATTCAACCGGCACATAGTACGTATCAGCGGCCAAGAAATATCAGGAGCTCAAATTTTGTATAAAGAAATCGTCATAACAAGTTTTGTGTGTATAATATAAAATTTAAATTATATGATAGTTTCATATGTATATCTATACCATCTTCTTTTAGGTTTAAAGAAAATTTCAGGTTTTAATATATATATAAATATATATATATATTACTTACCTACTTCAATGCAAAATTTAGATGTGTTTATCAATGGAGGAGTTAAGACAAGTCATAGTGTTATTTGTTGTAGCTACCCAAACTAAGTTTTGTTATGTAGTTGTGGCTAATTCTTGTTATATAAATGGAAGGCTTCTGCCTAAGGATATGTGTGCTTGACAAGATGATCAAATGAATCCCATTTTTTGCAAATCTTCCTTCTCTTATTAAAGAAAACTTCATCGTTTTATTATTATAAACTCTCGGAAGCTCGCTCTCTCTTGTTTAAGGTATCGAATCCTCAACTTGTAGGCACAATAACTAGAGTGTGAATCGATTAGTTTGGTTTCATATATTAAAACAATAAACCAAAACAAATATTTTTGGATGTTAGAAACCTATCAGTTTGGTTTCGTTTGTTCTTCTTCTTCCTATGGATTGTTTTCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGCGAAGATGGCAATAATAGAAATGTAAGAAAAATTCAAAAGGATGGTATTATCGTCGGTGAGACGCCTGAAATGATAAAAAACAAGAAATGGCATCAACGAAGATGGGTAGGTGGTAAGGAGAGAAAGACGGTGCCATCGTTGAAGTTGCGACGATCGCAAAAAGGGAGAGTTGAGTTAGGTGGGTGGTTTGCAGCATGGTTGGAAGAGGCTGAAGGGGAAAGAGAGAAAGATGAAGTTAAGGTGTTGGGGAAGAAAATTGAAGAAGCCCCTTTATGA

mRNA sequence

ATGGCTTGTTTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGCGAAGATGACAATAGTAGAAAGGCAAGAAAAATTCAAAGAGATGGTATTGTTGTTGGCGAGGCGCCTGCAAAGGTAAAGAGTAAGAAATGGCATCGACGAAGACAGGTAGGCGGTAAGGAGAGAAAGACGGTGTCATCGTCGAGGTTGCCACGATCACAAAGAGGGAGAGCTGAGTTGGGTGGTTGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAGAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGCGAAGATGGCAATAATAGAAATGTAAGAAAAATTCAAAAGGATGGTATTATCGTCGGTGAGACGCCTGAAATGATAAAAAACAAGAAATGGCATCAACGAAGATGGGTAGGTGGTAAGGAGAGAAAGACGGTGCCATCGTTGAAGTTGCGACGATCGCAAAAAGGGAGAGTTGAGTTAGGTGGGTGGTTTGCAGCATGGTTGGAAGAGGCTGAAGGGGAAAGAGAGAAAGATGAAGTTAAGGTGTTGGGGAAGAAAATTGAAGAAGCCCCTTTATGA

Coding sequence (CDS)

ATGGCTTGTTTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGCGAAGATGACAATAGTAGAAAGGCAAGAAAAATTCAAAGAGATGGTATTGTTGTTGGCGAGGCGCCTGCAAAGGTAAAGAGTAAGAAATGGCATCGACGAAGACAGGTAGGCGGTAAGGAGAGAAAGACGGTGTCATCGTCGAGGTTGCCACGATCACAAAGAGGGAGAGCTGAGTTGGGTGGTTGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAGAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGCGAAGATGGCAATAATAGAAATGTAAGAAAAATTCAAAAGGATGGTATTATCGTCGGTGAGACGCCTGAAATGATAAAAAACAAGAAATGGCATCAACGAAGATGGGTAGGTGGTAAGGAGAGAAAGACGGTGCCATCGTTGAAGTTGCGACGATCGCAAAAAGGGAGAGTTGAGTTAGGTGGGTGGTTTGCAGCATGGTTGGAAGAGGCTGAAGGGGAAAGAGAGAAAGATGAAGTTAAGGTGTTGGGGAAGAAAATTGAAGAAGCCCCTTTATGA

Protein sequence

MACFLVKCGVSHQVPRIREDDNSRKARKIQRDGIVVGEAPAKVKSKKWHRRRQVGGKERKTVSSSRLPRSQRGRAELGGWLAAWLEEAEGEREKDEVKELEKCGVSHQVPRIREDGNNRNVRKIQKDGIIVGETPEMIKNKKWHQRRWVGGKERKTVPSLKLRRSQKGRVELGGWFAAWLEEAEGEREKDEVKVLGKKIEEAPL

Homology

[Close]

BLAST of HG10005650 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-24
Identity = 74/105 (70.48%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MACFLVKCGVSHQVPRIREDDNSRKARKIQR-DGIVVGEAPAKVK-SKKWHRRRQVGGKE 60
           M CFL KCG  +QV RIRED ++RK RKI+R D IV+GEAP  +K S+K HRR  V  KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRR--VRSKE 60

Query: 61  RKTV-SSSRLPRSQRGRAELGGWLAAWLEEAEGEREKDEVKELEK 103
           RK + SSSRL RSQ  R ELGGWLAAWLEEAEGEREKDEVKELEK
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEK 103

[Close]

BLAST of HG10005650 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-17
Identity = 62/103 (60.19%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1   MACFLVKCGVSHQVPRIREDDNSRKARKIQRDGIVVGEAPAKVKSKKW-HRRRQVGGKER 60
           M CFLV CGVS Q  RI+ D+N RK +K+ RDGIVV E P   K KKW  RRR+VG  ER
Sbjct: 1   MDCFLV-CGVSRQAMRIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNER 60

Query: 61  KTVSSSRLPRSQRGRAELGGWLAAWLEEAE-GEREKDEVKELE 102
           +T   SRL R+  GR E GGWLAAWLEEAE  E EK   K LE
Sbjct: 61  ET---SRLQRTDGGRVESGGWLAAWLEEAEMKELEKAHAKGLE 99

[Close]

BLAST of HG10005650 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   MACFLVKCGVSHQVPRIREDDNSRKARKIQRDGIVVGEAPAKVKSKKWHRRRQVGGKERK 60
           MACF +KCG S QVPRI+ DD S+K  + Q+D   V EAP ++ +++ H++R V  KERK
Sbjct: 1   MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDD-TVDEAPVEISNQRQHQQR-VDSKERK 60

Query: 61  TVSSSRLPRSQRGRAELGGWLAAWLEEAEGEREKDEVKELEK 103
           T S  R      G++E  GWLAAWLEEAEG  EKDE+K L++
Sbjct: 61  TTSLKR-----GGKSESSGWLAAWLEEAEGHGEKDEIKALKE 95

[Close]

BLAST of HG10005650 vs. NCBI nr
Match: KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.7 bits (208), Expect = 9.9e-13
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 16  RIREDDNSRKARKIQRDGIVVGEAPAKVKSKKW-HRRRQVGGKERKTVSSSRLPRSQRGR 75
           RI+ D+N RK +K+ RDGIVV E P   K KKW  RRR+VG  ER+T   SRL R+  GR
Sbjct: 227 RIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNERET---SRLQRTDGGR 286

Query: 76  AELGGWLAAWLEEAE-GEREKDEVKELE 102
            E GGWLAAWLEEAE  E EK   K LE
Sbjct: 287 VESGGWLAAWLEEAEMKELEKAHAKGLE 311

[Close]

BLAST of HG10005650 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-10
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 11  SHQVPRIREDDNSRKARKIQRDGIVVGEAPAKVKSKKWHRRRQVGGKERKTVSSSRLPRS 70
           S QV RI +D+ S+K+RK QRD   VG+    + +K+  R+R+V  KE+KT+S +   R 
Sbjct: 128 SCQVSRIYDDEGSKKSRKTQRDD-TVGDTLEAIGNKR-RRQRRVDNKEQKTMSFTLRQRG 187

Query: 71  QRGRAELGGWLAAWLEEAEGEREKDEVKELEKCGVS 107
           +R   ELGGWLAAWLEEAE   EKDE+K LE+  +S
Sbjct: 188 ERN--ELGGWLAAWLEEAESHTEKDEIKALEEAAMS 219

[Close]

BLAST of HG10005650 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 74/105 (70.48%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MACFLVKCGVSHQVPRIREDDNSRKARKIQR-DGIVVGEAPAKVK-SKKWHRRRQVGGKE 60
           M CFL KCG  +QV RIRED ++RK RKI+R D IV+GEAP  +K S+K HRR  V  KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRR--VRSKE 60

Query: 61  RKTV-SSSRLPRSQRGRAELGGWLAAWLEEAEGEREKDEVKELEK 103
           RK + SSSRL RSQ  R ELGGWLAAWLEEAEGEREKDEVKELEK
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEK 103

The following BLAST results are available for this feature:

BLAST of HG10005650 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43248.1	4.3e-24	70.48	hypothetical protein Csa_020351 [Cucumis sativus]	[more]
KAG6572110.1	1.0e-17	60.19	hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589009.1	1.2e-15	51.96	hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011763.1	9.9e-13	59.09	Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589008.1	1.2e-10	50.00	hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10005650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1A5	2.1e-24	70.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1	[more]

BLAST of HG10005650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005650.1	HG10005650.1	mRNA