HG10005622 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005622
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 4324389 .. 4324763 (+)
RNA-Seq Expression	HG10005622
Synteny	HG10005622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGACGGTAAGCAGATCGCGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGATGCCGGAAAAATGCCACAGCCAATAGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTATGTTTCTCAGAGCGAAGAAAACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCATGGGCGGCGGCGGCCGAGGAGGAGTTTCTCCGGCGTCGGTCTCCGTCGAACAGCGGTTGGCACTTGTGAGGCGGAAGCAACTTCTCCGTGCGAAATTAGCGGCCGCCACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCATTCTGA

mRNA sequence

ATGATCGACGGTAAGCAGATCGCGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGATGCCGGAAAAATGCCACAGCCAATAGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTATGTTTCTCAGAGCGAAGAAAACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCATGGGCGGCGGCGGCCGAGGAGGAGTTTCTCCGGCGTCGGTCTCCGTCGAACAGCGGTTGGCACTTGTGAGGCGGAAGCAACTTCTCCGTGCGAAATTAGCGGCCGCCACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCATTCTGA

Coding sequence (CDS)

ATGATCGACGGTAAGCAGATCGCGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGATGCCGGAAAAATGCCACAGCCAATAGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTATGTTTCTCAGAGCGAAGAAAACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCATGGGCGGCGGCGGCCGAGGAGGAGTTTCTCCGGCGTCGGTCTCCGTCGAACAGCGGTTGGCACTTGTGAGGCGGAAGCAACTTCTCCGTGCGAAATTAGCGGCCGCCACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCATTCTGA

Protein sequence

MIDGKQIASPNGAFRRLFRARCRKNATANSLLEAIAKASREGTGYVSQSEENGVVRIKMVVKKTDLAQVLEAMGGGGRGGVSPASVSVEQRLALVRRKQLLRAKLAAATWSPALQSIPEEIDSF

Homology

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BLAST of HG10005622 vs. NCBI nr
Match: KAA0025124.1 (hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK19366.1 hypothetical protein E5676_scaffold3037G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49
Identity = 110/129 (85.27%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MIDGKQIASPNGAFRRLFRARCRKNATANSLLEAIAKASREGTGYVSQSEENGVVRIKMV 60
           MI+GKQ+ SPNG FRRLFRARCRK+A AN LLEAIAKASREGTG+VS SEENGVVRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMG-----GGGRGGVSPASVSVEQRLALVRRKQLLRAKLAAATWSPALQ 120
           VKKTDLAQVLEAMG     GGG GGV+ ASVS+EQRLA+VRRKQLLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIPEEIDSF 125
           SIPEEIDSF
Sbjct: 121 SIPEEIDSF 129

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BLAST of HG10005622 vs. NCBI nr
Match: XP_023511743.1 (uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MIDGKQIASPNGAFRRLFRARCRKNATANSLLEAIAKASREGTGYVSQSEENGVVRIKMV 60
           MIDGKQ ASPNGAFRRLFRAR RKNA A++LLEAIAK SREGTG+VSQ+EE+GVVRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKTDLAQVLEAM-GGGGRGGVSPASVSVEQRLALVRRKQLLRAKLAAATWSPALQSIPE 120
           VKKTDLAQVLEAM GGGG GGV+PASVSVEQRLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61  VKKTDLAQVLEAMAGGGGGGGVAPASVSVEQRLAIMRRKQFLRAKLAAATWSPALQSIPE 120

Query: 121 EIDSF 125
           EIDSF
Sbjct: 121 EIDSF 125

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BLAST of HG10005622 vs. NCBI nr
Match: KGN43274.1 (hypothetical protein Csa_020212 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-47
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MIDGKQIASPNGAFRRLFRARCRKNATANSLLEAIAKASREGTGYVSQSEENGVVRIKMV 60
           MI+GKQ+ASPNG FRRLFRARCRK+A AN LLEAIAKASREG G+VS SEENGVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMGGGGRGG--VSPASVSVEQRLALVRRKQLLRAKLAAATWSPALQSIP 120
           VKKTDL QVLEAMGGG  GG  V+PASVS+E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEIDSF 125
           EEIDSF
Sbjct: 121 EEIDSF 126

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BLAST of HG10005622 vs. NCBI nr
Match: KAG6572129.1 (hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.8 bits (486), Expect = 3.5e-45
Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MIDGKQIASPNGAFRRLFRARCRKNATANSLLEAIAKASREGTGYVSQSEENGVVRIKMV 60
           MIDGKQ ASPNGAFRRLFRAR RKNA A++LLEAIAK SREGTG+VSQ+EE+GVVRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKTDLAQVLEAM-GGGGRGGVSPASVSVEQRLALVRRKQLLRAKLAAATWSPALQSIPE 120
           VKKTDLAQVLEA+ GGGG GGV+PASVSVE RLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61  VKKTDLAQVLEALAGGGGGGGVAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIPE 120

[Close]

BLAST of HG10005622 vs. NCBI nr
Match: CAB4290916.1 (unnamed protein product [Prunus armeniaca] >CAB4321236.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 15  RRLFR-ARCRKN-----ATANSLLEAIAKAS---REGTGYVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N      T+N+L+EAIAK +   +EGT  +S Q++E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLEAMGGGG----RGGVSPASVSVEQRLALVRRKQLLRAKLAA-----ATWSPALQ 122
           DL QVLE M GGG       V P+S+ VEQRL+L+R+K LLRA LAA      +W PALQ
Sbjct: 66  DLKQVLELMNGGGINNQASAVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQGSWCPALQ 125

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BLAST of HG10005622 vs. ExPASy TrEMBL
Match: A0A5A7SHL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00200 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.7e-50
Identity = 110/129 (85.27%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MIDGKQIASPNGAFRRLFRARCRKNATANSLLEAIAKASREGTGYVSQSEENGVVRIKMV 60
           MI+GKQ+ SPNG FRRLFRARCRK+A AN LLEAIAKASREGTG+VS SEENGVVRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMG-----GGGRGGVSPASVSVEQRLALVRRKQLLRAKLAAATWSPALQ 120
           VKKTDLAQVLEAMG     GGG GGV+ ASVS+EQRLA+VRRKQLLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIPEEIDSF 125
           SIPEEIDSF
Sbjct: 121 SIPEEIDSF 129

[Close]

BLAST of HG10005622 vs. ExPASy TrEMBL
Match: A0A0A0K2L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MIDGKQIASPNGAFRRLFRARCRKNATANSLLEAIAKASREGTGYVSQSEENGVVRIKMV 60
           MI+GKQ+ASPNG FRRLFRARCRK+A AN LLEAIAKASREG G+VS SEENGVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMGGGGRGG--VSPASVSVEQRLALVRRKQLLRAKLAAATWSPALQSIP 120
           VKKTDL QVLEAMGGG  GG  V+PASVS+E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEIDSF 125
           EEIDSF
Sbjct: 121 EEIDSF 126

[Close]

BLAST of HG10005622 vs. ExPASy TrEMBL
Match: A0A6J5VPM4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51099 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 15  RRLFR-ARCRKN-----ATANSLLEAIAKAS---REGTGYVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N      T+N+L+EAIAK +   +EGT  +S Q++E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLEAMGGGG----RGGVSPASVSVEQRLALVRRKQLLRAKLAA-----ATWSPALQ 122
           DL QVLE M GGG       V P+S+ VEQRL+L+R+K LLRA LAA      +W PALQ
Sbjct: 66  DLKQVLELMNGGGINNQASAVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQGSWCPALQ 125

[Close]

BLAST of HG10005622 vs. ExPASy TrEMBL
Match: A0A314YA00 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10648 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.3e-16
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 15  RRLFR-ARCRKN-----ATANSLLEAIAKAS---REGTGYVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N      T+N+L+EAIAK +   +EGT  +S Q++E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLEAMGGGGRGGVS---PASVSVEQRLALVRRKQLLRAKLAA-----ATWSPALQS 122
           DL QVLE M GG     S   P+S+ VEQRL+L+R+K LLRA LAA     ++W PALQS
Sbjct: 66  DLKQVLELMNGGINSQASVVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQSSWRPALQS 125

[Close]

BLAST of HG10005622 vs. ExPASy TrEMBL
Match: A0A314Z8S5 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_20096 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 15  RRLFR-ARCRKN-----ATANSLLEAIAKAS---REGTGYVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N      T+N+L+EAIAK +   +EGT  +S QS+E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQSQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLEAMGGGGRGGVS---PASVSVEQRLALVRRKQLLRAKLAA-----ATWSPALQS 122
           DL QVLE   GG     S   P+S+ VEQRL+L+R+K LLRA LAA     ++W PALQS
Sbjct: 66  DLKQVLELTNGGINSQASVVRPSSLCVEQRLSLLRKKHLLRASLAAKRSRQSSWRPALQS 125

The following BLAST results are available for this feature:

BLAST of HG10005622 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025124.1	1.8e-49	85.27	hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK1936...	[more]
XP_023511743.1	4.0e-49	88.00	uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo]	[more]
KGN43274.1	2.9e-47	83.33	hypothetical protein Csa_020212 [Cucumis sativus]	[more]
KAG6572129.1	3.5e-45	85.83	hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sorori...	[more]
CAB4290916.1	1.5e-16	52.38	unnamed protein product [Prunus armeniaca] >CAB4321236.1 unnamed protein product...	[more]

BLAST of HG10005622 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHL7	8.7e-50	85.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K2L8	1.4e-47	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1	[more]
A0A6J5VPM4	7.4e-17	52.38	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51099 PE=4 S...	[more]
A0A314YA00	6.3e-16	52.00	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_106...	[more]
A0A314Z8S5	1.4e-15	52.00	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_200...	[more]

BLAST of HG10005622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148:SF4	OS02G0667300 PROTEIN	coord: 8..121
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 8..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005622.1	HG10005622.1	mRNA