HG10005613 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005613
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Geranylgeranyl pyrophosphate synthase family protein
Location	Chr07: 4205288 .. 4207393 (-)
RNA-Seq Expression	HG10005613
Synteny	HG10005613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTTCACTCATGGCGGCATCCTCTCTTAGTATGCATTTTGGAAGAAAGACTCCAATTCGATGTTCTTCCTCTTCTTCCTCAGCTGTTTCTTCTCAAGCCAAATCGATTCAGTTCGACCTGAAAACGTACTGGAAACAGCTGATTTTCGAGATCAACCAGAAGTTGGATGAAGCTGTTCCAATTCAGTACCCCGACCAGATCTATGAGGCTATGCGTTACTCCGTCTTGGCTCAAGGGGCCAAGCGAGCTCCTCCGGTTATGTGTGTCGCCGCCTGCGAGCTCTTCGGCGTTGATCGCATCGCTGCTTTCCCCACCGCCTGTGCCCTCGAAATGGTTATTTCTCTTATCTAATTTTTGGTTCTGGGTTGAGAGTCCTTTGAATTCTCGTGTTCTGTTATTTCTTGGGATGCAAATCTAGTTTGATTTTAAATTGCTCAATTCGAATACTCACTTGCGATTATAATTTCCTGGTTGTATGTGTTATGGTTGCAACTTTCTGTAATAGTTTTCTCAATCGTCTCTAACTGTGAAGATACTTAAACAAGGCTGTTCAATTCAATCTCTAGCTATGAATTATAATTAGGTTGGATAAACCCGAGGGATGGGCCGGGGGTAATTCACACAATCTTTTACATTATATTCTGGTTCTCAGAGTCAATGATCCAATACGTTTCAAATTGTGAGTTGATTTCTATTATCATGACCAGAATTGGTAGAATGTGGAAACTGCACTGGCTTGCTTGACTGGGTTGGATGAATAAATGTGAGAGAGCCCTTAAAAGGACTGTTGAGGGTACAGAGTTTGATAGAAGATGTACTGCTGAATAGTTCTTGTGTTCTATACTCTTTTCCTAGCTGTGCTTTACTCGGTTATATTTGCTCTTGTTAAATCATCGACCCAAAAGTTTAAGCAGGAGTTACGGTAAATTTTATTATATCAAACTTGTTAGTAATATAATATTAAATTTGCATTCACCCATCAGCTTAAGCTTTTAGGTCAATTGGCGATTTAATATAGTATGAGAGCAGATGACTGTACTTGTGTGTACTTCTCGTTACTGTGTTTGAGTGTTTTGTAAATAGCCATCCTCAACTAGTCCTTGTTAAATCACCCATCGACCCATTAATCTCTAGAACTGATATCCAGATCCAAGTTATGGTATCTCTCTCCAAATGGAAAACTAAGTTATGGTGAGATGCAATCTGGGATCTAACGTTCTAAGAGTAGATGTAAAACTCCTCAATTTTAGCCTCTGGAGATGGTTTTTAACCTTTAGGGATTGAGAGAGCTTATTAGTTCTTTGTGATATCAGTCAATGTGATAATATGTTCCTATGTAAAAACGTACTGTGTGTCACTAGGTTATTTTCAATAGCTCTTATCAACACATTTCAATTTAGTATCACAAATTGATCATGGGTCTTTTGACAGGTTCATGAAGCTTCTTTGATCCATGATGACCTTCCTTGCATGGATGATGACCCCTCACGGCGTGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCTATCCTTGCAGGTGATGCACTTTTCCCCCTTGGCTTCCAACATATCGTCTCACATACACCCTTTGATCTTGTTCCCGAGTCCCGCCTGCTCCGTGTGGTTGCCGAGATTGCCCGAGCTGTTGGTTCCAGAGGCATGGCAGCTGGACAGTTTCTTGACCTTGAGGGAGGTCCCAACTCCGTTGAATTCGTCCAAGAAAAAAAATTTGGTGAAATGGCCCAGTGTTCTGCAGTATGTGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGATACAGAGATTAAGAAGGTACGGAAGATCGGTTGGGGTGTTATATCAGGTAGTTGATGATATTTTGGAAGAACAATCGAAAAAACTCAATGAAACAGATGAGAGTAAGAGGAGAAAAGGGAAGAGCTATGTTGGAGTATATGGGATTGAGAAAGCTAAGGAGGTGGCAGAGGAGCTGAGGAGCAAAGCTAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGATCAAGTGATGCCTTTGTACAGCTTTGTGGACTATGCTGCTGATAGGAGCTTCAGTTTTGAAACTACAAGTTGA

mRNA sequence

ATGGCGTTTTCACTCATGGCGGCATCCTCTCTTAGTATGCATTTTGGAAGAAAGACTCCAATTCGATGTTCTTCCTCTTCTTCCTCAGCTGTTTCTTCTCAAGCCAAATCGATTCAGTTCGACCTGAAAACGTACTGGAAACAGCTGATTTTCGAGATCAACCAGAAGTTGGATGAAGCTGTTCCAATTCAGTACCCCGACCAGATCTATGAGGCTATGCGTTACTCCGTCTTGGCTCAAGGGGCCAAGCGAGCTCCTCCGGTTATGTGTGTCGCCGCCTGCGAGCTCTTCGGCGTTGATCGCATCGCTGCTTTCCCCACCGCCTGTGCCCTCGAAATGGTTCATGAAGCTTCTTTGATCCATGATGACCTTCCTTGCATGGATGATGACCCCTCACGGCGTGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCTATCCTTGCAGGTGATGCACTTTTCCCCCTTGGCTTCCAACATATCGTCTCACATACACCCTTTGATCTTGTTCCCGAGTCCCGCCTGCTCCGTGTGGTTGCCGAGATTGCCCGAGCTGTTGGTTCCAGAGGCATGGCAGCTGGACAGTTTCTTGACCTTGAGGGAGGTCCCAACTCCGTTGAATTCGTCCAAGAAAAAAAATTTGGTGAAATGGCCCAGTGTTCTGCAGTATGTGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGATACAGAGATTAAGAAGGTACGGAAGATCGGTTGGGGTGTTATATCAGGTAGTTGATGATATTTTGGAAGAACAATCGAAAAAACTCAATGAAACAGATGAGAGTAAGAGGAGAAAAGGGAAGAGCTATGTTGGAGTATATGGGATTGAGAAAGCTAAGGAGGTGGCAGAGGAGCTGAGGAGCAAAGCTAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGATCAAGTGATGCCTTTGTACAGCTTTGTGGACTATGCTGCTGATAGGAGCTTCAGTTTTGAAACTACAAGTTGA

Coding sequence (CDS)

ATGGCGTTTTCACTCATGGCGGCATCCTCTCTTAGTATGCATTTTGGAAGAAAGACTCCAATTCGATGTTCTTCCTCTTCTTCCTCAGCTGTTTCTTCTCAAGCCAAATCGATTCAGTTCGACCTGAAAACGTACTGGAAACAGCTGATTTTCGAGATCAACCAGAAGTTGGATGAAGCTGTTCCAATTCAGTACCCCGACCAGATCTATGAGGCTATGCGTTACTCCGTCTTGGCTCAAGGGGCCAAGCGAGCTCCTCCGGTTATGTGTGTCGCCGCCTGCGAGCTCTTCGGCGTTGATCGCATCGCTGCTTTCCCCACCGCCTGTGCCCTCGAAATGGTTCATGAAGCTTCTTTGATCCATGATGACCTTCCTTGCATGGATGATGACCCCTCACGGCGTGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCTATCCTTGCAGGTGATGCACTTTTCCCCCTTGGCTTCCAACATATCGTCTCACATACACCCTTTGATCTTGTTCCCGAGTCCCGCCTGCTCCGTGTGGTTGCCGAGATTGCCCGAGCTGTTGGTTCCAGAGGCATGGCAGCTGGACAGTTTCTTGACCTTGAGGGAGGTCCCAACTCCGTTGAATTCGTCCAAGAAAAAAAATTTGGTGAAATGGCCCAGTGTTCTGCAGTATGTGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGATACAGAGATTAAGAAGGTACGGAAGATCGGTTGGGGTGTTATATCAGGTAGTTGATGATATTTTGGAAGAACAATCGAAAAAACTCAATGAAACAGATGAGAGTAAGAGGAGAAAAGGGAAGAGCTATGTTGGAGTATATGGGATTGAGAAAGCTAAGGAGGTGGCAGAGGAGCTGAGGAGCAAAGCTAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGATCAAGTGATGCCTTTGTACAGCTTTGTGGACTATGCTGCTGATAGGAGCTTCAGTTTTGAAACTACAAGTTGA

Protein sequence

MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKAKKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS

Homology

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BLAST of HG10005613 vs. NCBI nr
Match: XP_038888577.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 647.5 bits (1669), Expect = 6.3e-182
Identity = 328/335 (97.91%), Postives = 333/335 (99.40%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEA 60
           MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKS+QFDLKTYWKQLI EINQKLDEA
Sbjct: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSLQFDLKTYWKQLILEINQKLDEA 60

Query: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 120
           VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDR+AAFPTACALEMVHEASLI
Sbjct: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLI 120

Query: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180
           HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV
Sbjct: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180

Query: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240
           VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR
Sbjct: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240

Query: 241 LRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKA 300
           LRRYGRSVGVLYQVVDDILEEQSKK +ETDESKRRKGKSYVGVYGIEKAKEVAEELR+KA
Sbjct: 241 LRRYGRSVGVLYQVVDDILEEQSKKPDETDESKRRKGKSYVGVYGIEKAKEVAEELRTKA 300

Query: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           KKELEGFEKYGDQVMPLYSFVDYAADRSFSFET+S
Sbjct: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETSS 335

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BLAST of HG10005613 vs. NCBI nr
Match: TYK23377.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit [Cucumis melo var. makuwa])

HSP 1 Score: 629.0 bits (1621), Expect = 2.3e-176
Identity = 319/335 (95.22%), Postives = 327/335 (97.61%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEA 60
           MAFSLMAASSLS  FGRKTPIRCSSSSSSA+SSQ KS+ FDLKTYWKQLI EINQKLDEA
Sbjct: 1   MAFSLMAASSLSTSFGRKTPIRCSSSSSSALSSQTKSLHFDLKTYWKQLILEINQKLDEA 60

Query: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 120
           V IQYP+QIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDR+AAFPTACALEMVHEASLI
Sbjct: 61  VLIQYPEQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLI 120

Query: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180
           HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV
Sbjct: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180

Query: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240
           VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR
Sbjct: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240

Query: 241 LRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKA 300
           LRRYGR+VGVLYQVVDDILEEQSKKLNET ESKRRKGKSYVGVYGIEKAKEVAEELR+KA
Sbjct: 241 LRRYGRAVGVLYQVVDDILEEQSKKLNETTESKRRKGKSYVGVYGIEKAKEVAEELRTKA 300

Query: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           K ELEGFEKYGD+VMPLYSFVDYAADRSFSFET+S
Sbjct: 301 KNELEGFEKYGDRVMPLYSFVDYAADRSFSFETSS 335

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BLAST of HG10005613 vs. NCBI nr
Match: XP_008447910.1 (PREDICTED: LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucumis melo])

HSP 1 Score: 621.7 bits (1602), Expect = 3.7e-174
Identity = 316/335 (94.33%), Postives = 326/335 (97.31%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEA 60
           MAFSLMAASSLS  FGRKTPIRCSSSSSSA+SSQ KS+ FDLKTYWKQLI EINQKLDEA
Sbjct: 1   MAFSLMAASSLSTSFGRKTPIRCSSSSSSALSSQTKSLHFDLKTYWKQLILEINQKLDEA 60

Query: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 120
           V IQYP+QIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDR+AAFPTACALEMVHEASLI
Sbjct: 61  VLIQYPEQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLI 120

Query: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180
           HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV
Sbjct: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180

Query: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240
           VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQ KKFGEMAQCSAVCGGLLAGAED EIQR
Sbjct: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQXKKFGEMAQCSAVCGGLLAGAEDPEIQR 240

Query: 241 LRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKA 300
           LRRYGR+VGVLYQVVDDILEEQSKKL+ET+ESKRRKGKSYVGVYGIEKAKEVAEELR+KA
Sbjct: 241 LRRYGRAVGVLYQVVDDILEEQSKKLDETNESKRRKGKSYVGVYGIEKAKEVAEELRTKA 300

Query: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           K ELEGFEKYGD+VMPLYSFVDYAADRSFSFET+S
Sbjct: 301 KNELEGFEKYGDRVMPLYSFVDYAADRSFSFETSS 335

[Close]

BLAST of HG10005613 vs. NCBI nr
Match: XP_004144868.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucumis sativus] >KGN43285.1 hypothetical protein Csa_020394 [Cucumis sativus])

HSP 1 Score: 620.5 bits (1599), Expect = 8.2e-174
Identity = 315/335 (94.03%), Postives = 324/335 (96.72%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEA 60
           MAFSLMAASSL+  F RKTPIRCSSSSS A+SSQ +SI FDLKTYWKQLI EINQKLDEA
Sbjct: 1   MAFSLMAASSLTTSFQRKTPIRCSSSSSPALSSQPQSIHFDLKTYWKQLILEINQKLDEA 60

Query: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 120
           VP+QYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDR+AAFPTACALEMVHEASLI
Sbjct: 61  VPLQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLI 120

Query: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180
           HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV
Sbjct: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180

Query: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240
           VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR
Sbjct: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240

Query: 241 LRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKA 300
           LRRYGR+VGVLYQVVDDILEEQSKKL+ TDESKR KGKSYV VYGIEKAKEVAEELR+KA
Sbjct: 241 LRRYGRAVGVLYQVVDDILEEQSKKLDYTDESKRSKGKSYVEVYGIEKAKEVAEELRAKA 300

Query: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           K ELEGFEKYGDQVMPLYSFVDYAADRSFSFET+S
Sbjct: 301 KNELEGFEKYGDQVMPLYSFVDYAADRSFSFETSS 335

[Close]

BLAST of HG10005613 vs. NCBI nr
Match: XP_023529740.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 609.4 bits (1570), Expect = 1.9e-170
Identity = 307/337 (91.10%), Postives = 326/337 (96.74%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRC--SSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLD 60
           MAFS+MAASSL M+FG K  IRC  SSSSSSAVSSQAKSIQFDLKTYWK+LI EINQKLD
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRCSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLD 91

Query: 61  EAVPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEAS 120
           EAVPIQYPDQIYEAMRYSVLA GAKRAPPVMCVAACELFGVDR+AAFPTACALEMVH AS
Sbjct: 92  EAVPIQYPDQIYEAMRYSVLANGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAAS 151

Query: 121 LIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLL 180
           LIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLL
Sbjct: 152 LIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLL 211

Query: 181 RVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEI 240
           RVVAEIA+AVGSRGMAAGQFLDLEGGPNS+EFVQEKKFGEM+QCSAVCGGLLAGAEDHE+
Sbjct: 212 RVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEV 271

Query: 241 QRLRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRS 300
           QRLRRYGR+VGVLYQVVDDI +EQ+KKL++TDESK+RKGKSYVGVYGIEKAKEVAEELR+
Sbjct: 272 QRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVAEELRT 331

Query: 301 KAKKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           KAKKELEGFEKYGD+VMPLYSFVDYAADRSFS E+++
Sbjct: 332 KAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 368

[Close]

BLAST of HG10005613 vs. ExPASy Swiss-Prot
Match: Q39108 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2)

HSP 1 Score: 409.5 bits (1051), Expect = 3.8e-113
Identity = 218/315 (69.21%), Postives = 247/315 (78.41%), Query Frame = 0


Query: 19  TPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVL 78
           +P    SSSSSA      S+ FDL+TYW  LI EINQKLDEA+P+++P  IYEAMRYSVL
Sbjct: 28  SPAAIRSSSSSAPG----SLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVL 87

Query: 79  AQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPS 138
           AQGAKRAPPVMCVAACELFG DR+AAFPTACALEMVH ASLIHDDLPCMDDDP RRG+PS
Sbjct: 88  AQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPS 147

Query: 139 NHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQF 198
           NHTVYG  MAILAGDALFPL FQHIVSHTP DLVP + +LR++ EIAR VGS GMAAGQ+
Sbjct: 148 NHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQY 207

Query: 199 LDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGVLYQVVDDI 258
           +DLEGGP  + FVQEKKFG M +CSAVCGGLL GA + E+Q LRRYGR+VG+LYQVVDDI
Sbjct: 208 VDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDI 267

Query: 259 LEEQSKKLNETDESKRRKGKSYVGVYGIEKA-KEVAEELRSKAKKELEGFE-KY--GDQV 318
            E+              K KSY G  G EK   E+AEEL+ KAKKEL+ F+ KY  GD +
Sbjct: 268 TED--------------KKKSYDG--GAEKGMMEMAEELKEKAKKELQVFDNKYGGGDTL 322

Query: 319 MPLYSFVDYAADRSF 330
           +PLY+FVDYAA R F
Sbjct: 328 VPLYTFVDYAAHRHF 322

[Close]

BLAST of HG10005613 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 255.8 bits (652), Expect = 7.0e-67
Identity = 146/327 (44.65%), Postives = 208/327 (63.61%), Query Frame = 0


Query: 22  RCSSSSSSAVSS----------QAKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYE 81
           R  SSSSS VSS          Q++   FD  +Y       +N+ LD AVP++ P +I+E
Sbjct: 46  RTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHE 105

Query: 82  AMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDP 141
           AMRYS+LA G KR  PV+C+AACEL G +   A P ACA+EM+H  SLIHDDLPCMD+D 
Sbjct: 106 AMRYSLLA-GGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDD 165

Query: 142 SRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSR 201
            RRG+P+NH V+G D+A+LAGDAL    F+H+ S T  D+V   R++R V E+A+A+G+ 
Sbjct: 166 LRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTE 225

Query: 202 GMAAGQFLDL--EG------GPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRR 261
           G+ AGQ +D+  EG      G   +EF+   K   + + SAV G ++ G  D EI+RLR+
Sbjct: 226 GLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRK 285

Query: 262 YGRSVGVLYQVVDDILE--EQSKKLNETDESKRRKGK-SYVGVYGIEKAKEVAEELRSKA 321
           + R +G+L+QVVDDIL+  + SK+L +T        K +Y  + G+EK++E AE+L  +A
Sbjct: 286 FARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREA 345

Query: 322 KKELEGFEKYGDQVMPLYSFVDYAADR 328
           + +L GF+   D+V PL +  +Y A R
Sbjct: 346 RDQLLGFD--SDKVAPLLALANYIAYR 369

[Close]

BLAST of HG10005613 vs. ExPASy Swiss-Prot
Match: Q43133 (Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba OX=3728 GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.0e-66
Identity = 141/320 (44.06%), Postives = 211/320 (65.94%), Query Frame = 0


Query: 24  SSSSSSAVSSQ-----AKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVL 83
           SSSSSS ++ +     + S  FD  +Y  +    +N+ LD AVP++ P +I+EAMRYS+L
Sbjct: 49  SSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLL 108

Query: 84  AQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPS 143
           A G KR  PV+C+AACEL G +   A P  CA+EM+H  SLIHDDLPCMD+D  RRG+P+
Sbjct: 109 A-GGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPT 168

Query: 144 NHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQF 203
           NH VYG D+A+LAGDAL    F+H+ S T  ++ P +R++R V E+A+A+G+ G+ AGQ 
Sbjct: 169 NHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQV 228

Query: 204 LDL--EG------GPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGV 263
           +D+  EG      G   ++F+   K   + + SAV GG++ G  D EI+RLR++ R +G+
Sbjct: 229 VDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGL 288

Query: 264 LYQVVDDILE--EQSKKLNETDESKRRKGK-SYVGVYGIEKAKEVAEELRSKAKKELEGF 323
           L+QVVDDIL+  + S++L +T        K +Y  + G+EK++E AE+L ++A+ +L GF
Sbjct: 289 LFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGF 348

Query: 324 EKYGDQVMPLYSFVDYAADR 328
           +   D+V PL +  +Y A+R
Sbjct: 349 D--SDKVAPLLALANYIANR 364

[Close]

BLAST of HG10005613 vs. ExPASy Swiss-Prot
Match: Q94ID7 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.1e-63
Identity = 138/336 (41.07%), Postives = 212/336 (63.10%), Query Frame = 0


Query: 10  SLSMHFGRKTPIRCSSSSSSAVSSQAKSIQ---------FDLKTYWKQLIFEINQKLDEA 69
           SL++ F  +   R  SS S+ ++ + +++Q         FD K+Y  Q    INQ L+ A
Sbjct: 38  SLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAA 97

Query: 70  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 129
           +P+Q P +I+E+MRYS+LA G KR  P +C+AACEL G +   A P ACA+EM+H  SLI
Sbjct: 98  IPLQEPAKIHESMRYSLLA-GGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLI 157

Query: 130 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 189
           HDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+HI   T    V  +R++R 
Sbjct: 158 HDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTL--NVSSARIVRA 217

Query: 190 VAEIARAVGSRGMAAGQFLDLEGGPNS------VEFVQEKKFGEMAQCSAVCGGLLAGAE 249
           V E+A+A+G+ G+ AGQ +D+    +S      +EF+   K  ++ + + V G +L G  
Sbjct: 218 VGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGT 277

Query: 250 DHEIQRLRRYGRSVGVLYQVVDDILE--EQSKKLNETDESKRRKGK-SYVGVYGIEKAKE 309
           D E+++LR+Y R +G+L+QVVDDIL+  + S++L +T        K +Y  + GIEK++E
Sbjct: 278 DEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSRE 337

Query: 310 VAEELRSKAKKELEGFEKYGDQVMPLYSFVDYAADR 328
            AE+L  +A+++L GF+   ++  PL +  +Y A R
Sbjct: 338 FAEKLNKEAQEQLAGFDP--EKAAPLIALANYIAHR 368

[Close]

BLAST of HG10005613 vs. ExPASy Swiss-Prot
Match: A0A0U3BRC5 (Geranylfarnesyl diphosphate synthase, chloroplastic OS=Leucosceptrum canum OX=694369 GN=GFDPS PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.4e-62
Identity = 141/318 (44.34%), Postives = 202/318 (63.52%), Query Frame = 0


Query: 25  SSSSSAVSSQAK----SIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVLAQ 84
           S S SA S QAK    + QFD K Y  + I  +NQ LD A+P++ P +I+EAMRYS+L  
Sbjct: 50  SVSDSAHSHQAKPHVRNAQFDFKAYMLEKITAVNQALDAALPVREPVKIHEAMRYSLLL- 109

Query: 85  GAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPSNH 144
           G KR  P++C+AAC L G D   A P+A ALEM+H  SL+HDDLPCMD+D  RRG+PSNH
Sbjct: 110 GGKRICPIVCLAACHLVGGDESTAMPSAAALEMIHAMSLMHDDLPCMDNDDLRRGRPSNH 169

Query: 145 TVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLD 204
            V+G    +LAG AL    F+HI + T    V   ++LRV+ E+A+ +G+ G+  GQ +D
Sbjct: 170 VVFGEGATVLAGYALIARAFEHIATAT--QGVGPGKILRVIGELAQLIGAEGVVGGQVVD 229

Query: 205 L----EG----GPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGVLY 264
           L    EG    G   +E++   K     + SAV G +L GA + EI+RLR+Y RS G+L+
Sbjct: 230 LRCGGEGQMAIGLEQLEYIHLHKTAASVEASAVAGAVLGGASEEEIERLRKYSRSAGLLF 289

Query: 265 QVVDDILE--EQSKKLNETDESKRRKGK-SYVGVYGIEKAKEVAEELRSKAKKELEGFEK 324
           QVVDDIL+  + S++L +T       GK +Y  + G+EK++E+AE+L+ +A+++L GF+ 
Sbjct: 290 QVVDDILDVTKSSEELGKTAGKDLAAGKTTYPKLLGMEKSREMAEKLKREAQEQLLGFDP 349

Query: 325 YGDQVMPLYSFVDYAADR 328
              +  PL + VD+ A R
Sbjct: 350 I--KAAPLIALVDFIAYR 362

[Close]

BLAST of HG10005613 vs. ExPASy TrEMBL
Match: A0A5D3DIC5 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004430 PE=3 SV=1)

HSP 1 Score: 629.0 bits (1621), Expect = 1.1e-176
Identity = 319/335 (95.22%), Postives = 327/335 (97.61%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEA 60
           MAFSLMAASSLS  FGRKTPIRCSSSSSSA+SSQ KS+ FDLKTYWKQLI EINQKLDEA
Sbjct: 1   MAFSLMAASSLSTSFGRKTPIRCSSSSSSALSSQTKSLHFDLKTYWKQLILEINQKLDEA 60

Query: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 120
           V IQYP+QIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDR+AAFPTACALEMVHEASLI
Sbjct: 61  VLIQYPEQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLI 120

Query: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180
           HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV
Sbjct: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180

Query: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240
           VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR
Sbjct: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240

Query: 241 LRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKA 300
           LRRYGR+VGVLYQVVDDILEEQSKKLNET ESKRRKGKSYVGVYGIEKAKEVAEELR+KA
Sbjct: 241 LRRYGRAVGVLYQVVDDILEEQSKKLNETTESKRRKGKSYVGVYGIEKAKEVAEELRTKA 300

Query: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           K ELEGFEKYGD+VMPLYSFVDYAADRSFSFET+S
Sbjct: 301 KNELEGFEKYGDRVMPLYSFVDYAADRSFSFETSS 335

[Close]

BLAST of HG10005613 vs. ExPASy TrEMBL
Match: A0A1S3BJF3 (LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490255 PE=3 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 1.8e-174
Identity = 316/335 (94.33%), Postives = 326/335 (97.31%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEA 60
           MAFSLMAASSLS  FGRKTPIRCSSSSSSA+SSQ KS+ FDLKTYWKQLI EINQKLDEA
Sbjct: 1   MAFSLMAASSLSTSFGRKTPIRCSSSSSSALSSQTKSLHFDLKTYWKQLILEINQKLDEA 60

Query: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 120
           V IQYP+QIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDR+AAFPTACALEMVHEASLI
Sbjct: 61  VLIQYPEQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLI 120

Query: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180
           HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV
Sbjct: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180

Query: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240
           VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQ KKFGEMAQCSAVCGGLLAGAED EIQR
Sbjct: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQXKKFGEMAQCSAVCGGLLAGAEDPEIQR 240

Query: 241 LRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKA 300
           LRRYGR+VGVLYQVVDDILEEQSKKL+ET+ESKRRKGKSYVGVYGIEKAKEVAEELR+KA
Sbjct: 241 LRRYGRAVGVLYQVVDDILEEQSKKLDETNESKRRKGKSYVGVYGIEKAKEVAEELRTKA 300

Query: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           K ELEGFEKYGD+VMPLYSFVDYAADRSFSFET+S
Sbjct: 301 KNELEGFEKYGDRVMPLYSFVDYAADRSFSFETSS 335

[Close]

BLAST of HG10005613 vs. ExPASy TrEMBL
Match: A0A0A0K0P7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G017680 PE=3 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 4.0e-174
Identity = 315/335 (94.03%), Postives = 324/335 (96.72%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEA 60
           MAFSLMAASSL+  F RKTPIRCSSSSS A+SSQ +SI FDLKTYWKQLI EINQKLDEA
Sbjct: 1   MAFSLMAASSLTTSFQRKTPIRCSSSSSPALSSQPQSIHFDLKTYWKQLILEINQKLDEA 60

Query: 61  VPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLI 120
           VP+QYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDR+AAFPTACALEMVHEASLI
Sbjct: 61  VPLQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLI 120

Query: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180
           HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV
Sbjct: 121 HDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRV 180

Query: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240
           VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR
Sbjct: 181 VAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 240

Query: 241 LRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKA 300
           LRRYGR+VGVLYQVVDDILEEQSKKL+ TDESKR KGKSYV VYGIEKAKEVAEELR+KA
Sbjct: 241 LRRYGRAVGVLYQVVDDILEEQSKKLDYTDESKRSKGKSYVEVYGIEKAKEVAEELRAKA 300

Query: 301 KKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           K ELEGFEKYGDQVMPLYSFVDYAADRSFSFET+S
Sbjct: 301 KNELEGFEKYGDQVMPLYSFVDYAADRSFSFETSS 335

[Close]

BLAST of HG10005613 vs. ExPASy TrEMBL
Match: A0A6J1EJ23 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435051 PE=3 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 1.6e-170
Identity = 307/339 (90.56%), Postives = 326/339 (96.17%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRC----SSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQK 60
           MAFS+MAASSL M+FG K  IRC    SSSSSSAVSSQAKSIQFDLKTYWK+LI EINQK
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQK 91

Query: 61  LDEAVPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHE 120
           LDEAVPIQYPDQIYEAMRYSVLA GAKRAPPVMCVAACELFGVDR+AAFPTACALEMVH 
Sbjct: 92  LDEAVPIQYPDQIYEAMRYSVLANGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHA 151

Query: 121 ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESR 180
           ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESR
Sbjct: 152 ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESR 211

Query: 181 LLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDH 240
           LLRVVAEIA+AVGSRGMAAGQFLDLEGGPNS+EFVQEKKFGEM+QCSAVCGGLLAGAEDH
Sbjct: 212 LLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDH 271

Query: 241 EIQRLRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEEL 300
           E+QRLRRYGR+VGVLYQVVDDI +EQ+KKL++TDESK+RKGKSYVGVYGIEKAKEVAEEL
Sbjct: 272 EVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVAEEL 331

Query: 301 RSKAKKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           R+KAKKELEGFEKYGD+VMPLYSFVDYAADRSFS E+++
Sbjct: 332 RTKAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 370

[Close]

BLAST of HG10005613 vs. ExPASy TrEMBL
Match: A0A6J1JQ91 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486485 PE=3 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 1.3e-169
Identity = 305/336 (90.77%), Postives = 325/336 (96.73%), Query Frame = 0


Query: 1   MAFSLMAASSLSMHFGRKTPIRC-SSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDE 60
           MAFS+MAASSL M+FG K  IRC SSSSSSAVSSQAKSI FDLKTYWK+LI EINQKLDE
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRCSSSSSSSAVSSQAKSIHFDLKTYWKKLILEINQKLDE 91

Query: 61  AVPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASL 120
           AVPIQYPDQIYEAMRYSVLA+GAKRAPPVMCVAACELFGVDR+AAFPTACALEMVH ASL
Sbjct: 92  AVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASL 151

Query: 121 IHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLR 180
           IHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLR
Sbjct: 152 IHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLR 211

Query: 181 VVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQ 240
           VVAEIA+AVGSRGMAAGQFLDLEGGPNS+EFVQEKKFGEM+QCSAVCGGLLAGAEDHE+Q
Sbjct: 212 VVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQ 271

Query: 241 RLRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSK 300
           RLRRYGR+VGVLYQVVDDI +EQ+KKL++TDESK+RKGKSYV VYGIEKAKEVAEELR+K
Sbjct: 272 RLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVRVYGIEKAKEVAEELRTK 331

Query: 301 AKKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 336
           AKKELEGFEKYGD+VMPLYSFVDYAADRSFS E+++
Sbjct: 332 AKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 367

[Close]

BLAST of HG10005613 vs. TAIR 10
Match: AT4G38460.1 (geranylgeranyl reductase )

HSP 1 Score: 409.5 bits (1051), Expect = 2.7e-114
Identity = 218/315 (69.21%), Postives = 247/315 (78.41%), Query Frame = 0


Query: 19  TPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVL 78
           +P    SSSSSA      S+ FDL+TYW  LI EINQKLDEA+P+++P  IYEAMRYSVL
Sbjct: 28  SPAAIRSSSSSAPG----SLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVL 87

Query: 79  AQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPS 138
           AQGAKRAPPVMCVAACELFG DR+AAFPTACALEMVH ASLIHDDLPCMDDDP RRG+PS
Sbjct: 88  AQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPS 147

Query: 139 NHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQF 198
           NHTVYG  MAILAGDALFPL FQHIVSHTP DLVP + +LR++ EIAR VGS GMAAGQ+
Sbjct: 148 NHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQY 207

Query: 199 LDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGVLYQVVDDI 258
           +DLEGGP  + FVQEKKFG M +CSAVCGGLL GA + E+Q LRRYGR+VG+LYQVVDDI
Sbjct: 208 VDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDI 267

Query: 259 LEEQSKKLNETDESKRRKGKSYVGVYGIEKA-KEVAEELRSKAKKELEGFE-KY--GDQV 318
            E+              K KSY G  G EK   E+AEEL+ KAKKEL+ F+ KY  GD +
Sbjct: 268 TED--------------KKKSYDG--GAEKGMMEMAEELKEKAKKELQVFDNKYGGGDTL 322

Query: 319 MPLYSFVDYAADRSF 330
           +PLY+FVDYAA R F
Sbjct: 328 VPLYTFVDYAAHRHF 322

[Close]

BLAST of HG10005613 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 )

HSP 1 Score: 255.8 bits (652), Expect = 5.0e-68
Identity = 146/327 (44.65%), Postives = 208/327 (63.61%), Query Frame = 0


Query: 22  RCSSSSSSAVSS----------QAKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYE 81
           R  SSSSS VSS          Q++   FD  +Y       +N+ LD AVP++ P +I+E
Sbjct: 46  RTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHE 105

Query: 82  AMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDP 141
           AMRYS+LA G KR  PV+C+AACEL G +   A P ACA+EM+H  SLIHDDLPCMD+D 
Sbjct: 106 AMRYSLLA-GGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDD 165

Query: 142 SRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSR 201
            RRG+P+NH V+G D+A+LAGDAL    F+H+ S T  D+V   R++R V E+A+A+G+ 
Sbjct: 166 LRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTE 225

Query: 202 GMAAGQFLDL--EG------GPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRR 261
           G+ AGQ +D+  EG      G   +EF+   K   + + SAV G ++ G  D EI+RLR+
Sbjct: 226 GLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRK 285

Query: 262 YGRSVGVLYQVVDDILE--EQSKKLNETDESKRRKGK-SYVGVYGIEKAKEVAEELRSKA 321
           + R +G+L+QVVDDIL+  + SK+L +T        K +Y  + G+EK++E AE+L  +A
Sbjct: 286 FARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREA 345

Query: 322 KKELEGFEKYGDQVMPLYSFVDYAADR 328
           + +L GF+   D+V PL +  +Y A R
Sbjct: 346 RDQLLGFD--SDKVAPLLALANYIAYR 369

[Close]

BLAST of HG10005613 vs. TAIR 10
Match: AT3G29430.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-63
Identity = 131/306 (42.81%), Postives = 195/306 (63.73%), Query Frame = 0


Query: 33  SQAKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVA 92
           S  ++  FD K+Y  +    ++  L+ +VP+Q P  I EA+RYS+LA G KR  P++C+A
Sbjct: 54  SNDRNSAFDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLA-GGKRVRPLLCIA 113

Query: 93  ACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAG 152
           ACEL G D   A   ACA+EM+H +SLIHDDLPCMDD   RRG+P+NH  +G DMA+LAG
Sbjct: 114 ACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVLAG 173

Query: 153 DALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLDL--------EGG 212
           DAL  L F+H ++     LV   R++R V E+A+A+G++G+ AGQ  DL        + G
Sbjct: 174 DALLALAFEH-MTFVSNGLVAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVG 233

Query: 213 PNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGVLYQVVDDILE--EQ 272
              +EF+   K   + + +AV G ++ G  + EI++LR+Y R +G+L+QVVDDIL+  E 
Sbjct: 234 LERLEFIHLHKTAALLEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTES 293

Query: 273 SKKLNETDESKRRKGK-SYVGVYGIEKAKEVAEELRSKAKKELEGFEKYGDQVMPLYSFV 328
           +K+L +T       GK +Y  + G+E+++EVAE+LR +A ++L GF+   D+  PL +  
Sbjct: 294 TKELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLRREAAEQLLGFD--SDKAAPLVALA 353

[Close]

BLAST of HG10005613 vs. TAIR 10
Match: AT2G18620.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 238.8 bits (608), Expect = 6.3e-63
Identity = 128/299 (42.81%), Postives = 193/299 (64.55%), Query Frame = 0


Query: 40  FDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGV 99
           FD  +Y       +N+ LD AV ++ P +I+EA+RYS+LA+G KR  PV+C+AACEL G 
Sbjct: 53  FDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARG-KRVRPVLCIAACELVGG 112

Query: 100 DRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLG 159
           +   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    
Sbjct: 113 EESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFA 172

Query: 160 FQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLDLEGG---PNSV-----EFV 219
           F+H+ + T    V  +R++R + E+A+A+GS+G+ AGQ +DL  G    N V     EF+
Sbjct: 173 FEHLATST---AVSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFI 232

Query: 220 QEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGVLYQVVDDILE--EQSKKLNET 279
              K   + + + V G ++ G  D E+++LRR+ R +G+L+QVVDDIL+  + S++L +T
Sbjct: 233 HVHKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKT 292

Query: 280 DESKRRKGK-SYVGVYGIEKAKEVAEELRSKAKKELEGFEKYGDQVMPLYSFVDYAADR 328
                   K +Y  + G+EK+K+ A++L S A ++L GF+    +V PL +  +Y A R
Sbjct: 293 AGKDLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFD--SSRVKPLLALANYIAKR 345

[Close]

BLAST of HG10005613 vs. TAIR 10
Match: AT3G14550.1 (geranylgeranyl pyrophosphate synthase 3 )

HSP 1 Score: 236.1 bits (601), Expect = 4.1e-62
Identity = 136/330 (41.21%), Postives = 200/330 (60.61%), Query Frame = 0


Query: 22  RCSSSSSSAVSSQA-------------KSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQ 81
           R   S SSA++SQ               +  FD K Y  +    +N  LD +VP++ P  
Sbjct: 33  RTGLSPSSALTSQGGRDMIPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLT 92

Query: 82  IYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMD 141
           + EA+RYS+LA G KR  P++C+A CEL G D   A   ACA+EM+H +SLIHDDLPCMD
Sbjct: 93  VQEAVRYSLLA-GGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMD 152

Query: 142 DDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAV 201
           +   RRG+P+NH VYG DMA+LAGDAL  L F+H ++     LV   R++R V E+ARA+
Sbjct: 153 NADLRRGKPTNHKVYGEDMAVLAGDALLALAFEH-MTFVSSGLVAPERMIRAVVELARAI 212

Query: 202 GSRGMAAGQFLDLEG--------GPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQR 261
           G+ G+ AGQ +DL          G   +EF+   K   + + +AV G ++ G  + EI++
Sbjct: 213 GTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEK 272

Query: 262 LRRYGRSVGVLYQVVDDILE--EQSKKLNETDESKRRKGK-SYVGVYGIEKAKEVAEELR 321
           LR+Y R +G+L+QVVDDIL+  + +++L +T       GK +Y  + G+E++KEVAE+LR
Sbjct: 273 LRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLR 332

Query: 322 SKAKKELEGFEKYGDQVMPLYSFVDYAADR 328
            +A+++L GF+    +  PL +   Y A R
Sbjct: 333 REAEEQLLGFDP--SKAAPLVALASYIACR 358

The following BLAST results are available for this feature:

BLAST of HG10005613 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888577.1	6.3e-182	97.91	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
TYK23377.1	2.3e-176	95.22	heterodimeric geranylgeranyl pyrophosphate synthase small subunit [Cucumis melo ...	[more]
XP_008447910.1	3.7e-174	94.33	PREDICTED: LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synth...	[more]
XP_004144868.1	8.2e-174	94.03	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_023529740.1	1.9e-170	91.10	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

BLAST of HG10005613 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39108	3.8e-113	69.21	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
P34802	7.0e-67	44.65	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]
Q43133	2.0e-66	44.06	Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis al...	[more]
Q94ID7	2.1e-63	41.07	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=39...	[more]
A0A0U3BRC5	1.4e-62	44.34	Geranylfarnesyl diphosphate synthase, chloroplastic OS=Leucosceptrum canum OX=69...	[more]

BLAST of HG10005613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIC5	1.1e-176	95.22	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis mel...	[more]
A0A1S3BJF3	1.8e-174	94.33	LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small s...	[more]
A0A0A0K0P7	4.0e-174	94.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G017680 PE=3 SV=1	[more]
A0A6J1EJ23	1.6e-170	90.56	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
A0A6J1JQ91	1.3e-169	90.77	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

BLAST of HG10005613 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38460.1	2.7e-114	69.21	geranylgeranyl reductase	[more]
AT4G36810.1	5.0e-68	44.65	geranylgeranyl pyrophosphate synthase 1	[more]
AT3G29430.1	2.2e-63	42.81	Terpenoid synthases superfamily protein	[more]
AT2G18620.1	6.3e-63	42.81	Terpenoid synthases superfamily protein	[more]
AT3G14550.1	4.1e-62	41.21	geranylgeranyl pyrophosphate synthase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 286..306
None	No IPR available	SFLD	SFLDS00005	Isoprenoid_Synthase_Type_I	coord: 70..312 e-value: 8.001E-43 score: 141.5
None	No IPR available	PANTHER	PTHR43281:SF5	HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC	coord: 17..331
None	No IPR available	PANTHER	PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	coord: 17..331
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 39..335 e-value: 2.2E-83 score: 281.9
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 43..308
IPR000092	Polyprenyl synthetase	PFAM	PF00348	polyprenyl_synt	coord: 68..267 e-value: 2.4E-32 score: 112.0
IPR000092	Polyprenyl synthetase	CDD	cd00685	Trans_IPPS_HT	coord: 66..327 e-value: 5.64718E-59 score: 188.914
IPR033749	Polyprenyl synthetase, conserved site	PROSITE	PS00723	POLYPRENYL_SYNTHASE_1	coord: 119..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005613.1	HG10005613.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
molecular_function	GO:0004659	prenyltransferase activity