HG10005592 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005592
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L6
LocationChr07: 3944477 .. 3945861 (-)
RNA-Seq ExpressionHG10005592
SyntenyHG10005592
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGTATGTCATATTGGTCTCTTGAGGAAGACTATAGATTGCAAGGAATCACGAATAGGAAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAACTTTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAAGGAAGATTCTGGGATCTTAAAGGTCAAGAAGGCACTGGAGACGCGAAGAGCCAATCAAATGCATGGGCTTTTCAGGTAATCTCATCATAGATTTAATATACTAATTCAACTTTTTCACAGTAACCAATCAATTTAACTTCAGTTTACTCTTTTGAAACATTTAGACTTTTGTTTCCTTTTTTTTTTCTTCCTTTTTTTTCCTCTCAAGTTTTAGTTGTGGGTCACTTGTTTTTATTTACCTTTTCCAAATTTGGTTTCCTCCTATGTAGATGTCCTACTTCACTATAAATTCAAAAGAGTGCTTGTTTATGTAATCAAGTTAGTCATCTTTTTTCCTCAATAATTATTTCAACCATACTTTTTACCGATGAAACATACCAATGGAGTGGCCAACTCTAGATATTTCCTCCTTTAATATTTTTATTTTTGAACGGCTAGAAAGTAACCAAATAATGTATCATCAAATTCTGAAAACACCAAGCTGACTTCATGCTATGAATGCAAACAACCAGCCATTCATTCCTTCATTTGAATTACAGATGGATGATGCCTGATGGAAAAAGAGCCATCAATAAGTGTTTTTACCCTAATCCATCCACTTAAGCTTATGGATTGATTGATGATTTATGAGGATATTTGAACAAAAAGTCTTGTGTTCAAACTTTTGTACGGTCATTTTCTCGCCAATTAATATTGATTTCTAATTTTCAAGCCTACAAGTGAGAGGGAGTGTTGAAGTACTGATATAATTAAATTTTTTCATAACCCAACTTAAGTTTTTGAGTTTATTGGTGATTTAACAGTTCTACTCTTACACAGAATGCAATAATTGTGTCATGTATGACCATTTCATTTGATTTCCTCAGGACCCTTACGGACAATATGGTGGTAGGAGTATCGAAGGGGTTTGAAAAGAAACTTCAATTGGTTGGTGTCGGTTATCGAGCAATTTTAGAAGGAAAAGACTTGGTATTGAATCTTGGGTTCTCTCATCCAGTTAGAATGACCATTCCTGAAGGTCTTCAAGTTAAGGTGGAAGAAAACACCAGAATTACAGTGAGTGGATATGACAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGGCCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTAG

mRNA sequence

ATGCCTGTATGTCATATTGGTCTCTTGAGGAAGACTATAGATTGCAAGGAATCACGAATAGGAAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAACTTTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAAGGAAGATTCTGGGATCTTAAAGGTCAAGAAGGCACTGGAGACGCGAAGAGCCAATCAAATGCATGGGCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTATCGAAGGGGTTTGAAAAGAAACTTCAATTGGTTGGTGTCGGTTATCGAGCAATTTTAGAAGGAAAAGACTTGGTATTGAATCTTGGGTTCTCTCATCCAGTTAGAATGACCATTCCTGAAGGTCTTCAAGTTAAGGTGGAAGAAAACACCAGAATTACAGTGAGTGGATATGACAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGGCCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTAG

Coding sequence (CDS)

ATGCCTGTATGTCATATTGGTCTCTTGAGGAAGACTATAGATTGCAAGGAATCACGAATAGGAAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAACTTTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAAGGAAGATTCTGGGATCTTAAAGGTCAAGAAGGCACTGGAGACGCGAAGAGCCAATCAAATGCATGGGCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTATCGAAGGGGTTTGAAAAGAAACTTCAATTGGTTGGTGTCGGTTATCGAGCAATTTTAGAAGGAAAAGACTTGGTATTGAATCTTGGGTTCTCTCATCCAGTTAGAATGACCATTCCTGAAGGTCTTCAAGTTAAGGTGGAAGAAAACACCAGAATTACAGTGAGTGGATATGACAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGGCCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTAG

Protein sequence

MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEKEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Homology
[Close]
BLAST of HG10005592 vs. NCBI nr
Match: XP_008455431.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 186/197 (94.42%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPVCHIGLLRKTI+CKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 37  MPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 96

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGI++VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRA++EGKDL
Sbjct: 97  REDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDL 156

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IP+G+Q+KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 157 VLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 216

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 217 YADEIVRRKEGKAGKKK 233

[Close]
BLAST of HG10005592 vs. NCBI nr
Match: KAA0040250.1 (50S ribosomal protein L6 [Cucumis melo var. makuwa] >TYK07099.1 50S ribosomal protein L6 [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 186/197 (94.42%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPVCHIGLLRKTI+CKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 1   MPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGI++VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRA++EGKDL
Sbjct: 61  REDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDL 120

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IP+G+Q+KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 121 VLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 181 YADEIVRRKEGKAGKKK 197

[Close]
BLAST of HG10005592 vs. NCBI nr
Match: XP_004144493.1 (50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetical protein Csa_020508 [Cucumis sativus])

HSP 1 Score: 379.4 bits (973), Expect = 1.9e-101
Identity = 184/197 (93.40%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MP CHIGLLRKTI+CKESRIGKQPIQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 37  MPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIE 96

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGI++VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRA++EGKDL
Sbjct: 97  REDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDL 156

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IP+G+Q+KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 157 VLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 216

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 217 YADEIVRRKEGKAGKKK 233

[Close]
BLAST of HG10005592 vs. NCBI nr
Match: XP_022952947.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 379.0 bits (972), Expect = 2.4e-101
Identity = 188/197 (95.43%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPV H G+LRKTI+CKESRIGKQPIQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 35  MPVSHTGILRKTIECKESRIGKQPIQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIE 94

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGIL+VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRA+LEGKDL
Sbjct: 95  REDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDL 154

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 155 VLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 214

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 215 YADEIVRRKEGKAGKKK 231

[Close]
BLAST of HG10005592 vs. NCBI nr
Match: KAG6572299.1 (50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 378.6 bits (971), Expect = 3.2e-101
Identity = 187/197 (94.92%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPV H G+LRKTI+CKESRIGKQPIQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 35  MPVSHTGILRKTIECKESRIGKQPIQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIE 94

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGIL+VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRA+LEGKDL
Sbjct: 95  REDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDL 154

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 155 VLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 214

Query: 181 YADEIVRRKEGKAGKKK 198
           YADE+VRRKEGKAGKKK
Sbjct: 215 YADEVVRRKEGKAGKKK 231

[Close]
BLAST of HG10005592 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 329.7 bits (844), Expect = 2.2e-89
Identity = 157/197 (79.70%), Postives = 179/197 (90.86%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           +PV  IG  RK++DCKESRIGKQPI VP+NV I ++GQDLKVKGPLGELSI YPREV +E
Sbjct: 24  VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEGQDLKVKGPLGELSITYPREVLVE 83

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           K++SG L+V+KA+ETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRA +EGKDL
Sbjct: 84  KQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRATVEGKDL 143

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           +L+LGFSHPVRM IP+ LQVKVEENT++TVSG DK  +GQFAA+IR WRPPEPYKGKGV+
Sbjct: 144 ILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVR 203

Query: 181 YADEIVRRKEGKAGKKK 198
           Y DE+VRRKEGKAGKKK
Sbjct: 204 YVDEVVRRKEGKAGKKK 220

[Close]
BLAST of HG10005592 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.1e-88
Identity = 158/196 (80.61%), Postives = 178/196 (90.82%), Query Frame = 0 

Query: 2   PVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEK 61
           P   +G   KTI+CKESRIGKQPI VPSNVTI L+GQDLKVKGPLGEL++ YPREV++ K
Sbjct: 28  PFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTK 87

Query: 62  EDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDLV 121
           E+SG L+VKK +ETRRANQMHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LV
Sbjct: 88  EESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELV 147

Query: 122 LNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKY 181
           LNLGFSHPV+M IP+ L+VKVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY
Sbjct: 148 LNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKY 207

Query: 182 ADEIVRRKEGKAGKKK 198
           +DEIVRRKEGKAGKKK
Sbjct: 208 SDEIVRRKEGKAGKKK 223

[Close]
BLAST of HG10005592 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.4e-51
Identity = 106/179 (59.22%), Postives = 133/179 (74.30%), Query Frame = 0 

Query: 18  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEKEDSGILKVKKALETRR 77
           SRIGK PI +P  V +T++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 78  ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMTIPEG 137
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA ++G++L+LN+G+S+PV +  PEG
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 138 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 197
           +QV VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

[Close]
BLAST of HG10005592 vs. ExPASy Swiss-Prot
Match: B1WQS5 (50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplF PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 9.2e-51
Identity = 99/179 (55.31%), Postives = 130/179 (72.63%), Query Frame = 0 

Query: 18  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEKEDSGILKVKKALETRR 77
           SRIGK+PI +P+ VTI ++GQ + VKGP G L +  P EV + +E   + +V++  ++R 
Sbjct: 2   SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETV-EVQRVDDSRT 61

Query: 78  ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMTIPEG 137
           A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L LN+G+S PV MT+P+G
Sbjct: 62  ARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQG 121

Query: 138 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 197
           + V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE VRRK GKAGKK
Sbjct: 122 INVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179

[Close]
BLAST of HG10005592 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-50
Identity = 99/179 (55.31%), Postives = 127/179 (70.95%), Query Frame = 0 

Query: 18  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEKEDSGILKVKKALETRR 77
           SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V +E +D G+L+V +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVE-QDEGVLRVVRQDDSRT 61

Query: 78  ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMTIPEG 137
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 138 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 197
           + V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  E+VRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]
BLAST of HG10005592 vs. ExPASy TrEMBL
Match: A0A5D3C9U8 (50S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004180 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.2e-103
Identity = 186/197 (94.42%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPVCHIGLLRKTI+CKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 1   MPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGI++VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRA++EGKDL
Sbjct: 61  REDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDL 120

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IP+G+Q+KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 121 VLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 181 YADEIVRRKEGKAGKKK 197

[Close]
BLAST of HG10005592 vs. ExPASy TrEMBL
Match: A0A1S3C0W5 (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.2e-103
Identity = 186/197 (94.42%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPVCHIGLLRKTI+CKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 37  MPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 96

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGI++VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRA++EGKDL
Sbjct: 97  REDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDL 156

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IP+G+Q+KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 157 VLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 216

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 217 YADEIVRRKEGKAGKKK 233

[Close]
BLAST of HG10005592 vs. ExPASy TrEMBL
Match: A0A0A0K3K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.1e-102
Identity = 184/197 (93.40%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MP CHIGLLRKTI+CKESRIGKQPIQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 37  MPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIE 96

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGI++VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRA++EGKDL
Sbjct: 97  REDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDL 156

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IP+G+Q+KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 157 VLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 216

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 217 YADEIVRRKEGKAGKKK 233

[Close]
BLAST of HG10005592 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 188/197 (95.43%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPV H G+LRKTI+CKESRIGKQPIQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 35  MPVSHTGILRKTIECKESRIGKQPIQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIE 94

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGIL+VKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRA+LEGKDL
Sbjct: 95  REDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDL 154

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 155 VLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 214

Query: 181 YADEIVRRKEGKAGKKK 198
           YADEIVRRKEGKAGKKK
Sbjct: 215 YADEIVRRKEGKAGKKK 231

[Close]
BLAST of HG10005592 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.5e-101
Identity = 185/197 (93.91%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MPVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIE 60
           MPVCHIGLLRKTI+CKESRIGKQPIQVPSNV I LQGQDLKVKGPLGELSILYPREVKIE
Sbjct: 30  MPVCHIGLLRKTIECKESRIGKQPIQVPSNVIIALQGQDLKVKGPLGELSILYPREVKIE 89

Query: 61  KEDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDL 120
           +EDSGIL+VKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEKKLQLVGVGYRA+LEGKDL
Sbjct: 90  REDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEKKLQLVGVGYRAMLEGKDL 149

Query: 121 VLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 180
           VLNLGFSHPVRM IP+GLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK
Sbjct: 150 VLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVK 209

Query: 181 YADEIVRRKEGKAGKKK 198
           YADE+VRRKEGKAGKKK
Sbjct: 210 YADEVVRRKEGKAGKKK 226

[Close]
BLAST of HG10005592 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 327.4 bits (838), Expect = 7.9e-90
Identity = 158/196 (80.61%), Postives = 178/196 (90.82%), Query Frame = 0 

Query: 2   PVCHIGLLRKTIDCKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEK 61
           P   +G   KTI+CKESRIGKQPI VPSNVTI L+GQDLKVKGPLGEL++ YPREV++ K
Sbjct: 28  PFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTK 87

Query: 62  EDSGILKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAILEGKDLV 121
           E+SG L+VKK +ETRRANQMHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LV
Sbjct: 88  EESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELV 147

Query: 122 LNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKY 181
           LNLGFSHPV+M IP+ L+VKVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY
Sbjct: 148 LNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKY 207

Query: 182 ADEIVRRKEGKAGKKK 198
           +DEIVRRKEGKAGKKK
Sbjct: 208 SDEIVRRKEGKAGKKK 223

[Close]
BLAST of HG10005592 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-20
Identity = 45/98 (45.92%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 100 FEKKLQLVGVGYRAILE--GKDLVLNLGFSHPVRMTIPEGLQVKVEENTRITVSGYDKCA 159
           F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 160 IGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 196
           + QFAA++R  +PPEPYKGKG+ Y DE+V++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:
BLAST of HG10005592 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455431.11.7e-10294.42PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo][more]
KAA0040250.11.7e-10294.4250S ribosomal protein L6 [Cucumis melo var. makuwa] >TYK07099.1 50S ribosomal pr... [more]
XP_004144493.11.9e-10193.4050S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetic... [more]
XP_022952947.12.4e-10195.4350S ribosomal protein L6, chloroplastic-like [Cucurbita moschata][more]
KAG6572299.13.2e-10194.9250S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. ... [more]
BLAST of HG10005592 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821932.2e-8979.7050S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=... [more]
O230491.1e-8880.6150S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ... [more]
B0C1E72.4e-5159.2250S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G... [more]
B1WQS59.2e-5155.3150S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O... [more]
B7KI012.0e-5055.3150S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN... [more]
BLAST of HG10005592 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C9U88.2e-10394.4250S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3C0W58.2e-10394.4250S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ... [more]
A0A0A0K3K99.1e-10293.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1[more]
A0A6J1GLT41.2e-10195.4350S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1C3Z54.5e-10193.9150S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of HG10005592 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05190.17.9e-9080.61Ribosomal protein L6 family [more]
AT2G18400.18.6e-2045.92ribosomal protein L6 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 88..113
score: 61.66
coord: 158..179
score: 66.42
coord: 116..132
score: 49.15
IPR019906Ribosomal protein L6, bacterial-typeTIGRFAMTIGR03654TIGR03654coord: 18..193
e-value: 2.2E-71
score: 237.2
IPR019906Ribosomal protein L6, bacterial-typeHAMAPMF_01365_BRibosomal_L6_Bcoord: 17..193
score: 36.973808
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 107..181
e-value: 6.1E-19
score: 68.5
coord: 27..99
e-value: 3.5E-15
score: 56.4
IPR000702Ribosomal protein L6PIRSFPIRSF002162RPL6p_RPL6a_RPL9e_RPL9ocoord: 16..194
e-value: 2.2E-50
score: 168.4
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 2..197
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 100..197
e-value: 4.2E-41
score: 141.0
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 16..99
e-value: 2.6E-26
score: 93.9
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 18..99
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 100..193
NoneNo IPR availablePANTHERPTHR11655:SF38BNAA10G03220D PROTEINcoord: 2..197
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 171..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005592.1HG10005592.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome