HG10005553 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005553
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr07: 3579816 .. 3580100 (+)
RNA-Seq Expression	HG10005553
Synteny	HG10005553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGCTGGGATGAACTTCAAGTTCGTTTAATTTCGCAGTTCCAAAATGCTTCCTCCATCATCGGGAGGCTGCAGGTCAGTCTCAGTTCTGATTTTAATCACACGTATTTGTATTTGTTTTTAGTTTAAAGATTAGAATCTTTGAAAATTTATTGTCAGATGCTTCAAGATCCTAAGAATTTTGGAAGTCTGGCTGGCATGGATGGCATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTATCATGTCTATTAAGAAAACAATGTAA

mRNA sequence

ATGGATCGCTGGGATGAACTTCAAGTTCGTTTAATTTCGCAGTTCCAAAATGCTTCCTCCATCATCGGGAGGCTGCAGATGCTTCAAGATCCTAAGAATTTTGGAAGTCTGGCTGGCATGGATGGCATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTATCATGTCTATTAAGAAAACAATGTAA

Coding sequence (CDS)

ATGGATCGCTGGGATGAACTTCAAGTTCGTTTAATTTCGCAGTTCCAAAATGCTTCCTCCATCATCGGGAGGCTGCAGATGCTTCAAGATCCTAAGAATTTTGGAAGTCTGGCTGGCATGGATGGCATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTATCATGTCTATTAAGAAAACAATGTAA

Protein sequence

MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

Homology

[Close]

BLAST of HG10005553 vs. NCBI nr
Match: XP_008447827.1 (PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. NCBI nr
Match: XP_008447830.1 (PREDICTED: uncharacterized protein At5g43822 isoform X4 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. NCBI nr
Match: TYK23276.1 (uncharacterized protein E5676_scaffold142G003320 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. NCBI nr
Match: XP_016900442.1 (PREDICTED: uncharacterized protein At5g43822 isoform X2 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. NCBI nr
Match: XP_038888522.1 (uncharacterized protein At5g43822 isoform X2 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          +DRWDELQVRLISQFQN SSIIGR+Q+LQDPKNFGSLAGMDGIVDALLGKQMESLQLS  
Sbjct: 19 IDRWDELQVRLISQFQNVSSIIGRVQLLQDPKNFGSLAGMDGIVDALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. ExPASy Swiss-Prot
Match: Q6NPG7 (Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-08
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          M++W+ LQVR +S F+NASSII RLQ +Q+  ++G+L  + GI DA++ +QM  L+  + 
Sbjct: 19 MEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKGIEDAVVQQQMGQLESLLR 78

Query: 61 SIKKTM 67
          S+K  M
Sbjct: 79 SMKNVM 84

[Close]

BLAST of HG10005553 vs. ExPASy TrEMBL
Match: A0A5D3DI19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003320 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. ExPASy TrEMBL
Match: A0A1S3BHR8 (uncharacterized protein At5g43822 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103490205 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. ExPASy TrEMBL
Match: A0A1S4DWT4 (uncharacterized protein At5g43822 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490205 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. ExPASy TrEMBL
Match: A0A1S3BIA7 (uncharacterized protein At5g43822 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490205 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLGKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. ExPASy TrEMBL
Match: A0A0A0K4X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025190 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.7e-24
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALL KQMESLQLS  
Sbjct: 19 MDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDGIVEALLAKQMESLQLSFS 78

Query: 61 SIKKTM 67
          SIKKTM
Sbjct: 79 SIKKTM 84

[Close]

BLAST of HG10005553 vs. TAIR 10
Match: AT5G43822.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-09
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIM 60
          M++W+ LQVR +S F+NASSII RLQ +Q+  ++G+L  + GI DA++ +QM  L+  + 
Sbjct: 19 MEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKGIEDAVVQQQMGQLESLLR 78

Query: 61 SIKKTM 67
          S+K  M
Sbjct: 79 SMKNVM 84

The following BLAST results are available for this feature:

BLAST of HG10005553 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447827.1	4.0e-24	92.42	PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis melo]	[more]
XP_008447830.1	4.0e-24	92.42	PREDICTED: uncharacterized protein At5g43822 isoform X4 [Cucumis melo]	[more]
TYK23276.1	4.0e-24	92.42	uncharacterized protein E5676_scaffold142G003320 [Cucumis melo var. makuwa]	[more]
XP_016900442.1	4.0e-24	92.42	PREDICTED: uncharacterized protein At5g43822 isoform X2 [Cucumis melo]	[more]
XP_038888522.1	1.2e-23	90.91	uncharacterized protein At5g43822 isoform X2 [Benincasa hispida]	[more]

BLAST of HG10005553 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPG7	1.4e-08	45.45	Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 P...	[more]

BLAST of HG10005553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DI19	2.0e-24	92.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BHR8	2.0e-24	92.42	uncharacterized protein At5g43822 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S4DWT4	2.0e-24	92.42	uncharacterized protein At5g43822 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S3BIA7	2.0e-24	92.42	uncharacterized protein At5g43822 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0K4X9	9.7e-24	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025190 PE=4 SV=1	[more]

BLAST of HG10005553 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43822.1	1.0e-09	45.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029159	Casein Kinase 2 substrate	PFAM	PF15011	CK2S	coord: 1..66 e-value: 3.2E-13 score: 49.9
None	No IPR available	PANTHER	PTHR37904:SF2	OS10G0566900 PROTEIN	coord: 1..66
IPR038985	At5g43822-like	PANTHER	PTHR37904	OS10G0566900 PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005553.1	HG10005553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005635	nuclear envelope