HG10005489 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005489
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionChlorophyll a/b-binding family protein
LocationChr07: 2991202 .. 2991576 (-)
RNA-Seq ExpressionHG10005489
SyntenyHG10005489
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGCACAGTAGTGAACCCACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGGTTCAGACAGTTGCAGAAAGACAAGCAAAGGAGAGAGAAGAAGGAGCTTCTTAACCTACTATCCGAATCAAATAGGGTTGATGCCTCGATAATGCATTTACAATCCAACGGCTCGTCAACCTCAAGAGATTTGGACTCCAATTCCCTCTCCCTTGGCCTGAACTTGCAGAATGCAGGTAAGGAAGTTGATATTGATGTCCATGAAGCCAGGTTGATGCCTGGCGACACAAAGTTCTGGTCTGGAAACTCAGTCATGACAAGCGTGTTAAGAAGTTTCGATAGTCCAGATGTCGATACCACTCTTCATCTATAG

mRNA sequence

ATGGGTAGGCACAGTAGTGAACCCACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGGTTCAGACAGTTGCAGAAAGACAAGCAAAGGAGAGAGAAGAAGGAGCTTCTTAACCTACTATCCGAATCAAATAGGGTTGATGCCTCGATAATGCATTTACAATCCAACGGCTCGTCAACCTCAAGAGATTTGGACTCCAATTCCCTCTCCCTTGGCCTGAACTTGCAGAATGCAGGTAAGGAAGTTGATATTGATGTCCATGAAGCCAGGTTGATGCCTGGCGACACAAAGTTCTGGTCTGGAAACTCAGTCATGACAAGCGTGTTAAGAAGTTTCGATAGTCCAGATGTCGATACCACTCTTCATCTATAG

Coding sequence (CDS)

ATGGGTAGGCACAGTAGTGAACCCACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGGTTCAGACAGTTGCAGAAAGACAAGCAAAGGAGAGAGAAGAAGGAGCTTCTTAACCTACTATCCGAATCAAATAGGGTTGATGCCTCGATAATGCATTTACAATCCAACGGCTCGTCAACCTCAAGAGATTTGGACTCCAATTCCCTCTCCCTTGGCCTGAACTTGCAGAATGCAGGTAAGGAAGTTGATATTGATGTCCATGAAGCCAGGTTGATGCCTGGCGACACAAAGTTCTGGTCTGGAAACTCAGTCATGACAAGCGTGTTAAGAAGTTTCGATAGTCCAGATGTCGATACCACTCTTCATCTATAG

Protein sequence

MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRVDASIMHLQSNGSSTSRDLDSNSLSLGLNLQNAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFDSPDVDTTLHL
Homology
BLAST of HG10005489 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 5.8e-40
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRVDASIMHLQSNGSS 60
           MGRH+SEPTMVGTSIALLQERFRQLQK+KQRRE+KELLNLL ESNRVDASIMHL+ NGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLQ-NAGKEVDIDVHEARLMPGDTKFWSGNSVM 107
           TSRDLDSNSLSLGLNL+ NAGK+VDID+HEAR MPGDTKF  GNS M
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 107

BLAST of HG10005489 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRVDASIMHL--QSNG 60
           MGRH SEPTMVGTSIALLQERFRQLQK+KQ+RE+KELLNLL ESNRVDASIMHL  + NG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLQ-NAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFDSPD 120
           S T R LDSNSLSLGLNL+ N GK+VDID+HEAR +P DTKF   NS M S LRSFD+ +
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120

Query: 121 VDTTLHL 125
           VDTTLHL
Sbjct: 121 VDTTLHL 126

BLAST of HG10005489 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-26
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 0

Query: 1  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRVD-ASIMHLQSNGS 60
          MGRHSSE TM+GTSIALLQERFRQLQKDKQRREKKELL+LLS+SNRV+ +SIMHL+SN S
Sbjct: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60

Query: 61 STSRDLDSNSLSLGLNLQNAGKEVDIDVHEARLM 94
          S SRDL+ +SLSLGLN  +AGK+VDI  HEAR +
Sbjct: 61 SNSRDLNPDSLSLGLNSSSAGKQVDI--HEARAL 92

BLAST of HG10005489 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 79/128 (61.72%), Postives = 90/128 (70.31%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRVDASIMHLQSNGSS 60
           M RHSSEP +VGTSIALLQERFRQLQK+K RREKKE++ LLS+SN +            S
Sbjct: 3   MSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSL------------S 62

Query: 61  TSRDLDSNSLSLGLNLQNAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFDSP---- 120
           TSRDL  NSLSLGLNL NAGK+V  D HE RLMPGDTK      ++    RS+D+P    
Sbjct: 63  TSRDLAFNSLSLGLNLGNAGKQV--DSHEGRLMPGDTK------LIPITFRSYDTPDVVV 110

Query: 121 DVDTTLHL 125
           DVDTTLHL
Sbjct: 123 DVDTTLHL 110

BLAST of HG10005489 vs. NCBI nr
Match: XP_023916992.1 (uncharacterized protein LOC112028527 [Quercus suber])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 61/130 (46.92%), Postives = 84/130 (64.62%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRV------DASIMHL 60
           MGR S++PTMV +SIALLQERFRQL+K K+RRE+KELLNL +E+ R+      + S +  
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLNLFAETERIMPTTHFEPSKLSF 60

Query: 61  QSNGSSTSRDLDSNSLSLGLNLQNAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFD 120
           Q   ++ +R    +S SL LNLQ   K+ D+   +A   P  T  W  ++ M S  RSF+
Sbjct: 61  QPQMTTPNRSTHRDSPSLELNLQT--KQADV---QAMKRPTLTDLWPNDAAMASTSRSFE 120

Query: 121 SPDVDTTLHL 125
           + DVDT+LHL
Sbjct: 121 NSDVDTSLHL 125

BLAST of HG10005489 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.6e-49
Identity = 107/125 (85.60%), Postives = 115/125 (92.00%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRVDASIMHLQSNGSS 60
           MGRH+SEPTMVGTSIALLQERFRQLQK+KQRRE+KELLNLL ESNRVDASIMHL+ NGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLQ-NAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFDSPDVD 120
           TSRDLDSNSLSLGLNL+ NAGK+VDID+HEAR MPGDTKF  GNS M S  RSFDSP+VD
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPNVD 120

Query: 121 TTLHL 125
           TTLHL
Sbjct: 121 TTLHL 125

BLAST of HG10005489 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRVDASIMHL--QSNG 60
           MGRH SEPTMVGTSIALLQERFRQLQK+KQ+RE+KELLNLL ESNRVDASIMHL  + NG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLQ-NAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFDSPD 120
           S T R LDSNSLSLGLNL+ N GK+VDID+HEAR +P DTKF   NS M S LRSFD+ +
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120

Query: 121 VDTTLHL 125
           VDTTLHL
Sbjct: 121 VDTTLHL 126

BLAST of HG10005489 vs. ExPASy TrEMBL
Match: A0A2N9FNY6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-16
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRV------DASIMHL 60
           MGR S++PTMV +SIALLQERFRQL+K K+RRE+KELL L +E+ R+      + S +  
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLKLFAETERIMPTTHFEPSKLSF 60

Query: 61  QSNGSSTSRDLDSNSLSLGLNLQNAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFD 120
           Q    +  R    +S SLGLNLQ   K+ D    +A  MP     W   + M S  RSF+
Sbjct: 61  QPEMITPHRSTLQDSPSLGLNLQT--KQADF---QAMKMPTLPNLWPNGAAMASTSRSFE 120

Query: 121 SPDVDTTLHL 125
           + DVDT+LHL
Sbjct: 121 NSDVDTSLHL 125

BLAST of HG10005489 vs. ExPASy TrEMBL
Match: A0A6J5UK47 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23015 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-15
Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESN----RVDASIMHLQS 60
           MGR SS+PT+V +SIALLQERFRQLQK K+RRE+++LL +LSE++    RV  SI H +S
Sbjct: 1   MGRESSDPTVVSSSIALLQERFRQLQKVKERREEQQLLKMLSETDHHHQRV-GSIRHFES 60

Query: 61  NGSSTSRDLDSNSLSLGLNLQNAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVL---RSF 120
           + +  S   D +SLSLGLNLQ   ++VD   H A      T  W  N+   S     +SF
Sbjct: 61  DMARPSSPAD-HSLSLGLNLQT--RQVD---HCAMKTQPSTISWPNNTTAASAASASKSF 120

Query: 121 DSPDVDTTLHL 125
           D+ D+DT+LHL
Sbjct: 121 DNSDLDTSLHL 124

BLAST of HG10005489 vs. ExPASy TrEMBL
Match: A0A7N2M9I5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 0

Query: 1   MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSESNRV------DASIMHL 60
           M R S++ TMV +SIALLQERFRQL+K K+RRE+KELLNL +E+ R+      + S +  
Sbjct: 1   MSRQSNDATMVSSSIALLQERFRQLEKVKERREEKELLNLFAETERIMPTTHFEPSKLSF 60

Query: 61  QSNGSSTSRDLDSNSLSLGLNLQNAGKEVDIDVHEARLMPGDTKFWSGNSVMTSVLRSFD 120
           Q   ++ +R    +S SL LNLQ   K+ D+   +A   P  T  W   + M S  RSF+
Sbjct: 61  QPQMTTPNRSTLRDSPSLELNLQT--KQADV---QAMKRPTLTDLWPNGAAMASTSRSFE 120

Query: 121 SPDVDTTLHL 125
           + DVDT+LHL
Sbjct: 121 NSDVDTSLHL 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646145.15.8e-4086.92hypothetical protein Csa_016195, partial [Cucumis sativus][more]
KAA0048752.12.2e-3977.17hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583... [more]
KAG6589104.13.6e-2677.66hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572236.11.1e-2561.72hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023916992.15.3e-1746.92uncharacterized protein LOC112028527 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6179.6e-4985.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1[more]
A0A5D3E6851.1e-3977.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9FNY62.2e-1646.92Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1[more]
A0A6J5UK472.4e-1549.62Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23015 PE=4 S... [more]
A0A7N2M9I53.1e-1545.38Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..47
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 1..124
NoneNo IPR availablePANTHERPTHR34570:SF12EXPRESSED PROTEINcoord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005489.1HG10005489.1mRNA