Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGGCAGCTTCCACTACTTTCAACCTTCTCTTCTTCTTCTTCTTCCTCTTCCTCCTCTCCTCTGTCCAAATCGAAGCCAGAGTCAATAAATTCTTCAGTAAGTTCGTTCATACGGATCACGAGGATGTTCTTAATCTTCCACCGGCGCCGGTCTCTGCTCCGCCTGAGATTTCTCCATCTCTGGCACCAACGCCGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTATACGGACGTGATTCCGACGCTGATGAAAATACTCGGACGATCACCGACGTCGAGGAGGAGATTCTCGCAGGAGACGGTGAGGAGGAGGGGAATCACAAATCTAGCTATCCGACGACGAATTTACAGACGGAAAATTACGAAAGCCCTAGAAGATACGAGGAGTACCAAAACACTAACTACGAGAACATCAACGGATTTAGAAATTCGGAGTATGAGAACAACAATGAGAACAAAAATTCCGAGTACGAGAGCGATTTTGAGAACAATAACGCTAGAAATTACCAGTACCAGAGCAATTTTGAGGACGACGGCTACAGAAGGAGGCGATACGAACCGACACAGCAGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGAAGGTATTTTCATGATATTAACTCGAAGAATGGAGAAGAAAATGAATCGTATGGAAGCAAGAAGTATCCGAAATACGAGTTCGATTCAATGGAGGAGTATGAGAAGAGTGAGGGATTGCTTCCTTGATGCAGAGAGGAGGAGGGGGAATTTTAGGGTTTAACTTAAACTTGAACTCTTAAATTTATGGAGGTTTTTTTGATGTTGTGTGTGTGATTTTGGTGTTTTTATCTTTGAGTTGTGAATTGTTTTTGCACAACTTGAATGAATGTTCTTTGGGCTTTTAATTTTGTTTAATGGGGAAGAGATGTGGATGTGGTTTTAATGTAGAAAAGTGATACTGAATATATATATTATATATATGTTGTTTCCATTTTGGAACTAAATTCCAGAATGAGATTAATAGATTCAATGTTTAGGTTTGTTCACAAAAATTCAGATGAATGACATTCTAAAACTACTTTGAATTTACAAGTTATAAATATGAACACGAACAATGGTTAGTTGAAGCGTTCATGCTCCCTTTTTTTTTTTACCCACACAAAGTATATATATATAAATCTAGATTTAAATACTATTTTAGTCGCTATAGTTTTGGTTTTGATCCTTAATACTCTCAAATTGTTCATTTTGGTCCCTATACTCTCAACTTTAATTTATTTAGTCCTTATACTTTAAAATTTATATTTTAATTTTGGTTCATTTTGGTCTTTATATTTTTTAAAAAGTTATCATTTTGGTCCTTCATTTTTAAAGGATAAAAATGGTCACTTTTTTTTAAATTGTTCAAATATCAAAATGAACCAAAGTAGGAAGTATAAGAACCAAAATGAACATTTTTAAAGTATAATGACTAAAATGAACATGTTTAAAGTATAGGGACTAAAATGAACCAAAGTTGATGGTATAAGGACCAAAATGAACAAAAATCAGAAATACAATAACTAAAATAATATTTAAATAAAAAAACTAACATGTGGCTATTTTTTATTTGACAGCTATTTGAATGCAACTGAGACATAACATTAAGTATTTTCTTATAGCCATTAATAAGATAGATATTAGGTGTGTAAAACCTCCATATCTCGACCACTTTGTTTTAAATTAAATTTGATTAGAATTAGAATTGAACAGAACGTCTCTTGGGTTCTAGTTTACCCAGGAAGAAGAAGCTTCAAATTGCCTCCATATAGGCAAATGATTAGGGTTGCAAGGTTTTTAAGCCCTACTCATCGTTTTGTAAGGAAATAA
mRNA sequence
ATGGCTATGGCAGCTTCCACTACTTTCAACCTTCTCTTCTTCTTCTTCTTCCTCTTCCTCCTCTCCTCTGTCCAAATCGAAGCCAGAGTCAATAAATTCTTCAGTAAGTTCGTTCATACGGATCACGAGGATGTTCTTAATCTTCCACCGGCGCCGGTCTCTGCTCCGCCTGAGATTTCTCCATCTCTGGCACCAACGCCGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTATACGGACGTGATTCCGACGCTGATGAAAATACTCGGACGATCACCGACGTCGAGGAGGAGATTCTCGCAGGAGACGGTGAGGAGGAGGGGAATCACAAATCTAGCTATCCGACGACGAATTTACAGACGGAAAATTACGAAAGCCCTAGAAGATACGAGGAGTACCAAAACACTAACTACGAGAACATCAACGGATTTAGAAATTCGGAGTATGAGAACAACAATGAGAACAAAAATTCCGAGTACGAGAGCGATTTTGAGAACAATAACGCTAGAAATTACCAGTACCAGAGCAATTTTGAGGACGACGGCTACAGAAGGAGGCGATACGAACCGACACAGCAGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGAAGAATTAGAATTGAACAGAACGTCTCTTGGGTTCTAGTTTACCCAGGAAGAAGAAGCTTCAAATTGCCTCCATATAGGCAAATGATTAGGGTTGCAAGGTTTTTAAGCCCTACTCATCGTTTTGTAAGGAAATAA
Coding sequence (CDS)
ATGGCTATGGCAGCTTCCACTACTTTCAACCTTCTCTTCTTCTTCTTCTTCCTCTTCCTCCTCTCCTCTGTCCAAATCGAAGCCAGAGTCAATAAATTCTTCAGTAAGTTCGTTCATACGGATCACGAGGATGTTCTTAATCTTCCACCGGCGCCGGTCTCTGCTCCGCCTGAGATTTCTCCATCTCTGGCACCAACGCCGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTATACGGACGTGATTCCGACGCTGATGAAAATACTCGGACGATCACCGACGTCGAGGAGGAGATTCTCGCAGGAGACGGTGAGGAGGAGGGGAATCACAAATCTAGCTATCCGACGACGAATTTACAGACGGAAAATTACGAAAGCCCTAGAAGATACGAGGAGTACCAAAACACTAACTACGAGAACATCAACGGATTTAGAAATTCGGAGTATGAGAACAACAATGAGAACAAAAATTCCGAGTACGAGAGCGATTTTGAGAACAATAACGCTAGAAATTACCAGTACCAGAGCAATTTTGAGGACGACGGCTACAGAAGGAGGCGATACGAACCGACACAGCAGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGAAGAATTAGAATTGAACAGAACGTCTCTTGGGTTCTAGTTTACCCAGGAAGAAGAAGCTTCAAATTGCCTCCATATAGGCAAATGATTAGGGTTGCAAGGTTTTTAAGCCCTACTCATCGTTTTGTAAGGAAATAA
Protein sequence
MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDGEEEGNHKSSYPTTNLQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGRIRIEQNVSWVLVYPGRRSFKLPPYRQMIRVARFLSPTHRFVRK
Homology
BLAST of HG10005449 vs. NCBI nr
Match:
XP_038886989.1 (protein E6-like [Benincasa hispida])
HSP 1 Score: 302.8 bits (774), Expect = 2.9e-78
Identity = 173/211 (81.99%), Postives = 184/211 (87.20%), Query Frame = 0
Query: 4 AASTTFNLL-FFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDV-LNLPPAPVSAPPEISP 63
AASTTFNLL FFFFF+ LLSSVQIEARVNKFFSKF++TD E V LPPAPVSAPPEISP
Sbjct: 3 AASTTFNLLSFFFFFILLLSSVQIEARVNKFFSKFINTDREVVPTKLPPAPVSAPPEISP 62
Query: 64 SLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG--EEEGNHKSSYP 123
SLAPTPAPAPFFDESQNAYGLYGRD+DADENTRTITDVEEEILAGDG E+E NHK++YP
Sbjct: 63 SLAPTPAPAPFFDESQNAYGLYGRDADADENTRTITDVEEEILAGDGEDEDEDNHKAAYP 122
Query: 124 TTNLQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQ 183
TN QT N Y N NYEN NGFRNSEYEN+NE +NSEYES FENNNARNYQYQ
Sbjct: 123 MTNSQTGN---------YGNNNYENNNGFRNSEYENHNEYRNSEYESAFENNNARNYQYQ 182
Query: 184 SNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
SNFEDDGYRRRR+EPT+QQGMSDTRFMENGR
Sbjct: 183 SNFEDDGYRRRRHEPTRQQGMSDTRFMENGR 204
BLAST of HG10005449 vs. NCBI nr
Match:
XP_022969172.1 (probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima])
HSP 1 Score: 258.1 bits (658), Expect = 8.1e-65
Identity = 160/248 (64.52%), Postives = 179/248 (72.18%), Query Frame = 0
Query: 1 MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNL--PPAPVSAPPE 60
MAMAAS TF L F F LLSSVQIEARVNKFFSKF+H D + VL + PAPVS PPE
Sbjct: 1 MAMAASITFKHLPFIF--LLLSSVQIEARVNKFFSKFIHADRDVVLPVAFSPAPVSVPPE 60
Query: 61 ISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDGEEEGNHKSSY 120
ISPSLAPTPAPAPFFDESQNAYGLYG D+D E++RTITDVEEEILA DGE++ HKS Y
Sbjct: 61 ISPSLAPTPAPAPFFDESQNAYGLYGSDADDSESSRTITDVEEEILAEDGEDKKTHKSGY 120
Query: 121 PTTNLQTENYESPRRYEE-------YQNTNYENINGFRNSEYENNNENKNSEYE------ 180
TNL T+N+ESP+RYE Y+N+ YE+ N RNSEYENNNE++NSEYE
Sbjct: 121 -QTNLHTDNFESPKRYESRNDGNSGYRNSEYESNNDHRNSEYENNNEHRNSEYENNNEYR 180
Query: 181 -----------------SDFENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMEN 217
SDFEN+ RNYQYQSN E DGYR+RRYEPT+QQGMSDTRFMEN
Sbjct: 181 NSEYENNNNEYRNTEYKSDFENSGVRNYQYQSNVEGDGYRKRRYEPTEQQGMSDTRFMEN 240
BLAST of HG10005449 vs. NCBI nr
Match:
KAA0059120.1 (protein E6-like [Cucumis melo var. makuwa])
HSP 1 Score: 257.3 bits (656), Expect = 1.4e-64
Identity = 153/214 (71.50%), Postives = 172/214 (80.37%), Query Frame = 0
Query: 2 AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN--LPPAPVSAPPE 61
A +ASTTFN FFFL LLSSVQ EARVNKFFSKF+HTDHE+V++ L PAP+S PPE
Sbjct: 3 AASASTTFNFNHLSFFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVSNTLSPAPLSVPPE 62
Query: 62 ISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG-EEEGNHKSS 121
SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITDVEEEIL G+G ++E N KS
Sbjct: 63 TSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDETNRKSE 122
Query: 122 YPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNY 181
+P N +QT + E E+YQN NYE NGFRNSEYEN+NE +NSEYE++ NN RNY
Sbjct: 123 FPMNNFVQTRDDE-----EQYQNKNYEYNNGFRNSEYENHNEYRNSEYENN--NNEGRNY 182
Query: 182 QYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
QYQSNFED GYRR R+EPT+QQGMSDTRFMENGR
Sbjct: 183 QYQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGR 209
BLAST of HG10005449 vs. NCBI nr
Match:
XP_011659700.1 (protein E6 [Cucumis sativus] >KGN43470.1 hypothetical protein Csa_020541 [Cucumis sativus])
HSP 1 Score: 256.9 bits (655), Expect = 1.8e-64
Identity = 152/217 (70.05%), Postives = 173/217 (79.72%), Query Frame = 0
Query: 2 AMAASTTF-----NLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN-LPPAPVSA 61
A +AS TF + FFFFFL L+SSVQIEARVNKFFSKF+HTDHE V N L PAP+S
Sbjct: 3 AASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPLSV 62
Query: 62 PPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG-EEEGNH 121
PPE SPSLAPTPAPAPFFDESQNAYGLYG D DADENTRTITDVEEEIL G+G ++EGN
Sbjct: 63 PPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGND 122
Query: 122 KSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNA 181
KS +P N ++T N E E+YQN NYEN NGFRNSEY+N NE +NSEYE++ NN
Sbjct: 123 KSGFPMNNFVETRNEE-----EQYQNKNYENNNGFRNSEYDNRNEYRNSEYENN--NNEG 182
Query: 182 RNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
RNY+ Q NFE+ GYRR R+EPT+Q+GMSDTRFMENGR
Sbjct: 183 RNYEDQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGR 212
BLAST of HG10005449 vs. NCBI nr
Match:
XP_008455495.1 (PREDICTED: protein E6-like [Cucumis melo] >TYK21625.1 protein E6-like [Cucumis melo var. makuwa])
HSP 1 Score: 256.9 bits (655), Expect = 1.8e-64
Identity = 153/214 (71.50%), Postives = 171/214 (79.91%), Query Frame = 0
Query: 2 AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPE 61
A +ASTTFN FFFL LLSSVQ EARVNKFFSKF+HTDHE+V+ L PAP+S PPE
Sbjct: 3 AASASTTFNFNHLSFFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVPNTLSPAPLSVPPE 62
Query: 62 ISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG-EEEGNHKSS 121
SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITDVEEEIL G+G ++E N KS
Sbjct: 63 TSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDETNRKSE 122
Query: 122 YPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNY 181
+P N +QT + E E+YQN NYE NGFRNSEYEN+NE +NSEYE++ NN RNY
Sbjct: 123 FPMNNFVQTRDDE-----EQYQNKNYEYNNGFRNSEYENHNEYRNSEYENN--NNEGRNY 182
Query: 182 QYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
QYQSNFED GYRR R+EPT+QQGMSDTRFMENGR
Sbjct: 183 QYQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGR 209
BLAST of HG10005449 vs. ExPASy TrEMBL
Match:
A0A6J1HVL6 (probable ATP-dependent RNA helicase ddx42 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468248 PE=4 SV=1)
HSP 1 Score: 258.1 bits (658), Expect = 3.9e-65
Identity = 160/248 (64.52%), Postives = 179/248 (72.18%), Query Frame = 0
Query: 1 MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNL--PPAPVSAPPE 60
MAMAAS TF L F F LLSSVQIEARVNKFFSKF+H D + VL + PAPVS PPE
Sbjct: 1 MAMAASITFKHLPFIF--LLLSSVQIEARVNKFFSKFIHADRDVVLPVAFSPAPVSVPPE 60
Query: 61 ISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDGEEEGNHKSSY 120
ISPSLAPTPAPAPFFDESQNAYGLYG D+D E++RTITDVEEEILA DGE++ HKS Y
Sbjct: 61 ISPSLAPTPAPAPFFDESQNAYGLYGSDADDSESSRTITDVEEEILAEDGEDKKTHKSGY 120
Query: 121 PTTNLQTENYESPRRYEE-------YQNTNYENINGFRNSEYENNNENKNSEYE------ 180
TNL T+N+ESP+RYE Y+N+ YE+ N RNSEYENNNE++NSEYE
Sbjct: 121 -QTNLHTDNFESPKRYESRNDGNSGYRNSEYESNNDHRNSEYENNNEHRNSEYENNNEYR 180
Query: 181 -----------------SDFENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMEN 217
SDFEN+ RNYQYQSN E DGYR+RRYEPT+QQGMSDTRFMEN
Sbjct: 181 NSEYENNNNEYRNTEYKSDFENSGVRNYQYQSNVEGDGYRKRRYEPTEQQGMSDTRFMEN 240
BLAST of HG10005449 vs. ExPASy TrEMBL
Match:
A0A5A7UVJ1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00270 PE=4 SV=1)
HSP 1 Score: 257.3 bits (656), Expect = 6.7e-65
Identity = 153/214 (71.50%), Postives = 172/214 (80.37%), Query Frame = 0
Query: 2 AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN--LPPAPVSAPPE 61
A +ASTTFN FFFL LLSSVQ EARVNKFFSKF+HTDHE+V++ L PAP+S PPE
Sbjct: 3 AASASTTFNFNHLSFFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVSNTLSPAPLSVPPE 62
Query: 62 ISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG-EEEGNHKSS 121
SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITDVEEEIL G+G ++E N KS
Sbjct: 63 TSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDETNRKSE 122
Query: 122 YPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNY 181
+P N +QT + E E+YQN NYE NGFRNSEYEN+NE +NSEYE++ NN RNY
Sbjct: 123 FPMNNFVQTRDDE-----EQYQNKNYEYNNGFRNSEYENHNEYRNSEYENN--NNEGRNY 182
Query: 182 QYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
QYQSNFED GYRR R+EPT+QQGMSDTRFMENGR
Sbjct: 183 QYQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGR 209
BLAST of HG10005449 vs. ExPASy TrEMBL
Match:
A0A5D3DDN1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00230 PE=4 SV=1)
HSP 1 Score: 256.9 bits (655), Expect = 8.7e-65
Identity = 153/214 (71.50%), Postives = 171/214 (79.91%), Query Frame = 0
Query: 2 AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPE 61
A +ASTTFN FFFL LLSSVQ EARVNKFFSKF+HTDHE+V+ L PAP+S PPE
Sbjct: 3 AASASTTFNFNHLSFFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVPNTLSPAPLSVPPE 62
Query: 62 ISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG-EEEGNHKSS 121
SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITDVEEEIL G+G ++E N KS
Sbjct: 63 TSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDETNRKSE 122
Query: 122 YPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNY 181
+P N +QT + E E+YQN NYE NGFRNSEYEN+NE +NSEYE++ NN RNY
Sbjct: 123 FPMNNFVQTRDDE-----EQYQNKNYEYNNGFRNSEYENHNEYRNSEYENN--NNEGRNY 182
Query: 182 QYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
QYQSNFED GYRR R+EPT+QQGMSDTRFMENGR
Sbjct: 183 QYQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGR 209
BLAST of HG10005449 vs. ExPASy TrEMBL
Match:
A0A0A0K1D4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038700 PE=4 SV=1)
HSP 1 Score: 256.9 bits (655), Expect = 8.7e-65
Identity = 152/217 (70.05%), Postives = 173/217 (79.72%), Query Frame = 0
Query: 2 AMAASTTF-----NLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN-LPPAPVSA 61
A +AS TF + FFFFFL L+SSVQIEARVNKFFSKF+HTDHE V N L PAP+S
Sbjct: 3 AASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPLSV 62
Query: 62 PPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG-EEEGNH 121
PPE SPSLAPTPAPAPFFDESQNAYGLYG D DADENTRTITDVEEEIL G+G ++EGN
Sbjct: 63 PPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGND 122
Query: 122 KSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNA 181
KS +P N ++T N E E+YQN NYEN NGFRNSEY+N NE +NSEYE++ NN
Sbjct: 123 KSGFPMNNFVETRNEE-----EQYQNKNYENNNGFRNSEYDNRNEYRNSEYENN--NNEG 182
Query: 182 RNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
RNY+ Q NFE+ GYRR R+EPT+Q+GMSDTRFMENGR
Sbjct: 183 RNYEDQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGR 212
BLAST of HG10005449 vs. ExPASy TrEMBL
Match:
A0A1S3C0L5 (protein E6-like OS=Cucumis melo OX=3656 GN=LOC103495646 PE=4 SV=1)
HSP 1 Score: 256.9 bits (655), Expect = 8.7e-65
Identity = 153/214 (71.50%), Postives = 171/214 (79.91%), Query Frame = 0
Query: 2 AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPE 61
A +ASTTFN FFFL LLSSVQ EARVNKFFSKF+HTDHE+V+ L PAP+S PPE
Sbjct: 3 AASASTTFNFNHLSFFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVPNTLSPAPLSVPPE 62
Query: 62 ISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDG-EEEGNHKSS 121
SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITDVEEEIL G+G ++E N KS
Sbjct: 63 TSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDETNRKSE 122
Query: 122 YPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNY 181
+P N +QT + E E+YQN NYE NGFRNSEYEN+NE +NSEYE++ NN RNY
Sbjct: 123 FPMNNFVQTRDDE-----EQYQNKNYEYNNGFRNSEYENHNEYRNSEYENN--NNEGRNY 182
Query: 182 QYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGR 211
QYQSNFED GYRR R+EPT+QQGMSDTRFMENGR
Sbjct: 183 QYQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGR 209
BLAST of HG10005449 vs. TAIR 10
Match:
AT1G28400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). )
HSP 1 Score: 46.2 bits (108), Expect = 4.5e-05
Identity = 77/257 (29.96%), Postives = 111/257 (43.19%), Query Frame = 0
Query: 3 MAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHED-----VLNLPPAPVSAPP 62
MA ST +LLFFF L LLS+ QI AR + FF KF +D + L + +
Sbjct: 1 MAFSTRGSLLFFFTTLVLLST-QIHARDSYFFGKFHRESPKDQNPNSFIPLETSEKTTVE 60
Query: 63 EISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDGEEEGNHKSS 122
E + F ES N YGLYG ++ + N D +EE + +E + +
Sbjct: 61 ESVLNKKEQEQDPTFVPESGNGYGLYGHETTYNNN----NDNKEEFNNNNKNDEKVNSKT 120
Query: 123 YPTTNLQTENYESPRRYEEYQNTNYEN--INGFRNSEYENNN---------ENKNSEYES 182
+ T +L +E ES YEE EN G+ N E+ NNN E N++Y+
Sbjct: 121 FSTPSL-SETEESFNNYEENYPKKTENYGTKGYNNEEFNNNNNKYDANFKEEFNNNKYDE 180
Query: 183 DF--------ENNNARNYQYQSNFEDDGY----------------------RRRRYE--- 210
++ NNN NY+Y N +++ + R Y+
Sbjct: 181 NYAKEEFNNNNNNNNYNYKYDENVKEESFPENNEDNKKNVYNSNAYGTELERETPYKGYS 240
BLAST of HG10005449 vs. TAIR 10
Match:
AT2G33850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). )
HSP 1 Score: 45.4 bits (106), Expect = 7.7e-05
Identity = 65/223 (29.15%), Postives = 101/223 (45.29%), Query Frame = 0
Query: 5 ASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTD--HEDVLNLPPAPVSAPPEISPS 64
A +T + LFFF +L S QI AR + F KF D ++ NL P + E
Sbjct: 2 AFSTSSCLFFFLLTLVLFSTQISARNSYSFGKFQREDPKEQNPNNLVPIETNEKKE---- 61
Query: 65 LAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDGEEEGNHKSSYPTTN 124
P F +S+N YGLYG ++ + N EE+ E+ N+ S+ T +
Sbjct: 62 --PDDQNPAFIPQSENGYGLYGHETTDNNN--------EELNNNKYEDNVNYDDSFSTPS 121
Query: 125 LQ--TENYESPRRYEE-YQNTNYENINGFRNSEYENNN----ENKNSEYESDFENNNARN 184
L + ES + Y+E Y T N S YEN+N + ++++ ++ + ++
Sbjct: 122 LSETAQTQESYKNYKESYPKTTEIYDNNKDTSYYENSNAYGTDKRDNDINDPYKGYSNKD 181
Query: 185 YQYQSNFEDDGYRRRRYEP--------TQQQGMSDTRFMENGR 211
Y N G +R EP ++QGMSDTR+M NG+
Sbjct: 182 TSYYENPNTYGTEKREKEPAYRGYNNNVERQGMSDTRYMANGK 210
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038886989.1 | 2.9e-78 | 81.99 | protein E6-like [Benincasa hispida] | [more] |
| XP_022969172.1 | 8.1e-65 | 64.52 | probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima] | [more] |
| KAA0059120.1 | 1.4e-64 | 71.50 | protein E6-like [Cucumis melo var. makuwa] | [more] |
| XP_011659700.1 | 1.8e-64 | 70.05 | protein E6 [Cucumis sativus] >KGN43470.1 hypothetical protein Csa_020541 [Cucumi... | [more] |
| XP_008455495.1 | 1.8e-64 | 71.50 | PREDICTED: protein E6-like [Cucumis melo] >TYK21625.1 protein E6-like [Cucumis m... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1HVL6 | 3.9e-65 | 64.52 | probable ATP-dependent RNA helicase ddx42 isoform X2 OS=Cucurbita maxima OX=3661... | [more] |
| A0A5A7UVJ1 | 6.7e-65 | 71.50 | Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0027... | [more] |
| A0A5D3DDN1 | 8.7e-65 | 71.50 | Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G0023... | [more] |
| A0A0A0K1D4 | 8.7e-65 | 70.05 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038700 PE=4 SV=1 | [more] |
| A0A1S3C0L5 | 8.7e-65 | 71.50 | protein E6-like OS=Cucumis melo OX=3656 GN=LOC103495646 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G28400.1 | 4.5e-05 | 29.96 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
| AT2G33850.1 | 7.7e-05 | 29.15 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
