HG10005342 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005342
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Wound-responsive family protein
Location	Chr07: 1697911 .. 1698168 (-)
RNA-Seq Expression	HG10005342
Synteny	HG10005342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAAGAAGAGCTTGGGTTGTAGCAGCCAGCGTTGGAGTGGTGGAGGCTTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACCCTTAGATCGGTTCAACAGTACGCCAAAAACCATGTTAGATCGGTTTCTCAGGCTAAGAAGCTTTCTTCTCCGTCTGCCGCGGCGGTTTCCGATCAGAAATGGAAGCAATCGGAGGAATCTTTGAGAACTGTCATGTACTTGAGCTGTTGGGGGCCAAATAACTGA

mRNA sequence

ATGAGTTCATCAAGAAGAGCTTGGGTTGTAGCAGCCAGCGTTGGAGTGGTGGAGGCTTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACCCTTAGATCGGTTCAACAGTACGCCAAAAACCATGTTAGATCGGTTTCTCAGGCTAAGAAGCTTTCTTCTCCGTCTGCCGCGGCGGTTTCCGATCAGAAATGGAAGCAATCGGAGGAATCTTTGAGAACTGTCATGTACTTGAGCTGTTGGGGGCCAAATAACTGA

Coding sequence (CDS)

ATGAGTTCATCAAGAAGAGCTTGGGTTGTAGCAGCCAGCGTTGGAGTGGTGGAGGCTTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACCCTTAGATCGGTTCAACAGTACGCCAAAAACCATGTTAGATCGGTTTCTCAGGCTAAGAAGCTTTCTTCTCCGTCTGCCGCGGCGGTTTCCGATCAGAAATGGAAGCAATCGGAGGAATCTTTGAGAACTGTCATGTACTTGAGCTGTTGGGGGCCAAATAACTGA

Protein sequence

MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAVSDQKWKQSEESLRTVMYLSCWGPNN

Homology

[Close]

BLAST of HG10005342 vs. NCBI nr
Match: XP_023554652.1 (uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo] >KAG6572338.1 hypothetical protein SDJN03_29066, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011949.1 hypothetical protein SDJN02_26857, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.9 bits (424), Expect = 3.7e-38
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNHT++SVQQYAKNHVRSVSQAKKLSSPS AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. NCBI nr
Match: XP_022952158.1 (uncharacterized protein LOC111454919 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNH ++SVQQYAKNHVRSVSQAKKLSSPS AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. NCBI nr
Match: XP_022969311.1 (uncharacterized protein LOC111468355 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 3.1e-37
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNHT++SVQQYAKNHVRSVSQAKKLSS S AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. NCBI nr
Match: XP_038888492.1 (uncharacterized protein LOC120078325 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 4.1e-37
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MS SRRAWVVAASVGVVEALKDQG+CRWNHT+RS+QQYAKNHVRSVSQA+KLSSPSA AV
Sbjct: 1  MSCSRRAWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSVSQARKLSSPSATAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. NCBI nr
Match: KAA0031602.1 (uncharacterized protein E6C27_scaffold139G003700 [Cucumis melo var. makuwa] >TYK07054.1 uncharacterized protein E5676_scaffold13G003720 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MS SR+ WVVAASVGVVEALKDQG+CRWNHT+RS+QQYAKNHVRS+SQAKKLSSPSAAAV
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD +WKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. ExPASy TrEMBL
Match: A0A6J1GJQ8 (uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC111454919 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.8e-38
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNH ++SVQQYAKNHVRSVSQAKKLSSPS AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. ExPASy TrEMBL
Match: A0A6J1HXF9 (uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNHT++SVQQYAKNHVRSVSQAKKLSS S AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. ExPASy TrEMBL
Match: A0A5D3C714 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003720 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MS SR+ WVVAASVGVVEALKDQG+CRWNHT+RS+QQYAKNHVRS+SQAKKLSSPSAAAV
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD +WKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. ExPASy TrEMBL
Match: A0A1S3C0Q4 (uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.4e-36
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MS SR+ WVVAASVGVVEALKDQG+CRWNHT+RS+QQYAKNHVRS+SQAKKLSSPSAA V
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD +WKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. ExPASy TrEMBL
Match: A0A0A0K3P5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAAV 60
          MS  R+ WVVAASVGVVEALKDQG+CRWNHT+RS+QQYAKNHVRS+SQAKKLSSPSAAAV
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD KW QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of HG10005342 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-25
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQ-GVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAA 60
          MSS+ + W+VAAS+G VEALKDQ GVCRWN+ +RS  QY +N++RSVSQAKKLSS S   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 VSDQKWKQSEESLRTVMYLSCWGPN 85
           +  K KQ+EESLRTVMYLSCWGP+
Sbjct: 61 TN--KTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of HG10005342 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-24
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQ-GVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSPSAAA 60
          MSS+ +AW VA S+G VEALKDQ G+CRWN+ LRSV Q+ +N+VRSVSQ K+ SS S +A
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 V-----SDQKWKQSEESLRTVMYLSCWGPN 85
                  +K K++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of HG10005342 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHTLRSVQQYAKNHVRSVSQAKKLSSP--SAAA 61
          +  + +W VA ++  VE LKDQGV RWN+  R + + A   VR+++   + S P  S++A
Sbjct: 3  AGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSA 62

Query: 62 VSDQKWKQS----EESLRTVMYLSCWGP 84
           S +    S    E S    M LSC+GP
Sbjct: 63 TSIRSKPLSTTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of HG10005342 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 24 GVCRWNHTLRSVQQYAKNHVRSVSQAKK-------LSSPSAAAVSDQKWKQSEESLRTVM 83
          GV   + TLRS  + + +  +S S +         L S    A + ++ +Q+EESLRTVM
Sbjct: 20 GVSGGDTTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVM 79

The following BLAST results are available for this feature:

BLAST of HG10005342 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554652.1	3.7e-38	96.47	uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo] >KAG6572338.1 ...	[more]
XP_022952158.1	1.4e-37	95.29	uncharacterized protein LOC111454919 [Cucurbita moschata]	[more]
XP_022969311.1	3.1e-37	95.29	uncharacterized protein LOC111468355 [Cucurbita maxima]	[more]
XP_038888492.1	4.1e-37	92.94	uncharacterized protein LOC120078325 [Benincasa hispida]	[more]
KAA0031602.1	4.5e-36	89.41	uncharacterized protein E6C27_scaffold139G003700 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of HG10005342 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJQ8	6.8e-38	95.29	uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1HXF9	1.5e-37	95.29	uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355...	[more]
A0A5D3C714	2.2e-36	89.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C0Q4	6.4e-36	88.24	uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=...	[more]
A0A0A0K3P5	1.4e-35	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1	[more]

BLAST of HG10005342 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	8.5e-25	67.06	Wound-responsive family protein	[more]
AT4G10270.1	2.5e-24	62.22	Wound-responsive family protein	[more]
AT4G33560.1	1.2e-07	36.36	Wound-responsive family protein	[more]
AT4G05070.1	6.4e-04	37.88	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..83 e-value: 3.8E-33 score: 114.3
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..84
None	No IPR available	PANTHER	PTHR33090:SF56	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005342.1	HG10005342.1	mRNA