HG10005216 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005216
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal export protein NMD3
Location	Chr07: 551817 .. 553333 (+)
RNA-Seq Expression	HG10005216
Synteny	HG10005216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAGAAGTAGGATTGTTTGCAGTTCACAAGACCATTGGCAGTATCTTATGTTGCAAATGTGGAATTCCCATTACACCAAATGCTGCCAATAAGTGCGTCAAGTGCTTGTGTTCTGAAGTTGACATAACAGAAGGTTTACAGAAGCAATTGACTATTATGCATTGTCCAGATTGCGAGAGTACTTGCAGCCACCTCAAACTTGGATTAAAGTACAATTAGAATCAAAGGAGCTACTGACATTCTGTATCAAAAGGTTAAAGAATCTGAATAAGGTAAAGCTGGTATATGCTGAATTTGTTTGGACTGAACCCCATTCCAAGAGGATCAAGGTCAAGTTGAAGGTTCAAAAAGAGGTCCATGGAGCAATTTTCGAACAATCCTACATTGTTGAGTATGTTGTACAGGATCACTTGTGTGAGTCCTGCTCAAGGGTCCAGGCCAACCCTGACCAATGGGTGGCTTCTGTTCAACTCAGGCAGCACATCTTGCACCGGCGTACGTTTTTCTTCTTGGAGCAACTGATACTCAAGCACGGTGCTGCTGCTCGCGCCATAAGAATCAAACAGATGGATCAAGGTATTGACTTCTTCTTTTCTAATAGGAGTCATGGTGTTAAGTTTGTGGAATTTATTGGAAAGGTTGCTCCGATTCGGAGTCGCCATGATAAACAACTTGTTTCTCATGATCCTAAGAGTAACATTCACAACCATAAGCACACTTTTTCTGTTGAAATATCCCCAATATGCCGTGAGGATTTGATATGTTTGCCTCCTAAAGTTGCTGTTGGTTTAGGCAATCTTGGTCCTCTTGTAATTTGCACTAAAGTTACAAATGTCATTGCTTTACTTGATCCATTCACCTTAAGGCATTGCTTCTTGGATGCTGATCAGTATTGGCGGACATCCTTTAGGTCTCTACTTACGAGCAGGCAACTTGTGGAATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGTTCGAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATGACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCGCTTGGTTATGATCTTTATGGAGCCAATAGTAATGATATGGAGCTTGAAAAATATAAGGGTCTTGAGCTTCCAGAGGCAATTTTAATCAAGAAGAGTTATGAAGAAAAGCGTCAAAAAAAGCATGGAAAGCCTCGATCATGGAAACTTAAATCTCTTGAAATGGATGTTGATGATAGGGGTAGAGCAGAGGAAGATAATATGAACTCAAAGTATGAACAGTTTTTGAGAGATTTGGAGGAGAATCCAGATATGAGGTTCAACATATCATTGTATCGAAATAGGGAATACCAACCATCTGAAATGACTGATGGAGAAGATGACGGACCTTCGGTACCACTTGAAGAGTTGCTTGCTGATCTTGATCTAAGTGAAGGTGATAGAGATGATGCCATGCACGAGTAA

mRNA sequence

ATGGATGGAGAAGTAGGATTGTTTGCAGTTCACAAGACCATTGGCAGTATCTTATGTTGCAAATGTGGAATTCCCATTACACCAAATGCTGCCAATAAATTGCGAGAGTACTTGCAGCCACCTCAAACTTGGATTAAAGTACAATTAGAATCAAAGGAGCTACTGACATTCTGTATCAAAAGGTTAAAGAATCTGAATAAGGTAAAGCTGGTATATGCTGAATTTGTTTGGACTGAACCCCATTCCAAGAGGATCAAGGTCAAGTTGAAGGTTCAAAAAGAGGTCCATGGAGCAATTTTCGAACAATCCTACATTGTTGAGTATGTTGTACAGGATCACTTGTGTGAGTCCTGCTCAAGGGTCCAGGCCAACCCTGACCAATGGGTGGCTTCTGTTCAACTCAGGCAGCACATCTTGCACCGGCGTACGTTTTTCTTCTTGGAGCAACTGATACTCAAGCACGGTGCTGCTGCTCGCGCCATAAGAATCAAACAGATGGATCAAGGTATTGACTTCTTCTTTTCTAATAGGAGTCATGGTGTTAAGTTTGTGGAATTTATTGGAAAGGTTGCTCCGATTCGGAGTCGCCATGATAAACAACTTGTTTCTCATGATCCTAAGAGTAACATTCACAACCATAAGCACACTTTTTCTGTTGAAATATCCCCAATATGCCGTGAGGATTTGATATGTTTGCCTCCTAAAGTTGCTGTTGGTTTAGGCAATCTTGGTCCTCTTGTAATTTGCACTAAAGTTACAAATGTCATTGCTTTACTTGATCCATTCACCTTAAGGCATTGCTTCTTGGATGCTGATCAGTATTGGCGGACATCCTTTAGGTCTCTACTTACGAGCAGGCAACTTGTGGAATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGTTCGAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATGACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCGCTTGGTTATGATCTTTATGGAGCCAATAGTAATGATATGGAGCTTGAAAAATATAAGGGTCTTGAGCTTCCAGAGGCAATTTTAATCAAGAAGAGTTATGAAGAAAAGCGTCAAAAAAAGCATGGAAAGCCTCGATCATGGAAACTTAAATCTCTTGAAATGGATGTTGATGATAGGGGTAGAGCAGAGGAAGATAATATGAACTCAAAGTATGAACAGTTTTTGAGAGATTTGGAGGAGAATCCAGATATGAGGTTCAACATATCATTGTATCGAAATAGGGAATACCAACCATCTGAAATGACTGATGGAGAAGATGACGGACCTTCGGTACCACTTGAAGAGTTGCTTGCTGATCTTGATCTAAGTGAAGGTGATAGAGATGATGCCATGCACGAGTAA

Coding sequence (CDS)

ATGGATGGAGAAGTAGGATTGTTTGCAGTTCACAAGACCATTGGCAGTATCTTATGTTGCAAATGTGGAATTCCCATTACACCAAATGCTGCCAATAAATTGCGAGAGTACTTGCAGCCACCTCAAACTTGGATTAAAGTACAATTAGAATCAAAGGAGCTACTGACATTCTGTATCAAAAGGTTAAAGAATCTGAATAAGGTAAAGCTGGTATATGCTGAATTTGTTTGGACTGAACCCCATTCCAAGAGGATCAAGGTCAAGTTGAAGGTTCAAAAAGAGGTCCATGGAGCAATTTTCGAACAATCCTACATTGTTGAGTATGTTGTACAGGATCACTTGTGTGAGTCCTGCTCAAGGGTCCAGGCCAACCCTGACCAATGGGTGGCTTCTGTTCAACTCAGGCAGCACATCTTGCACCGGCGTACGTTTTTCTTCTTGGAGCAACTGATACTCAAGCACGGTGCTGCTGCTCGCGCCATAAGAATCAAACAGATGGATCAAGGTATTGACTTCTTCTTTTCTAATAGGAGTCATGGTGTTAAGTTTGTGGAATTTATTGGAAAGGTTGCTCCGATTCGGAGTCGCCATGATAAACAACTTGTTTCTCATGATCCTAAGAGTAACATTCACAACCATAAGCACACTTTTTCTGTTGAAATATCCCCAATATGCCGTGAGGATTTGATATGTTTGCCTCCTAAAGTTGCTGTTGGTTTAGGCAATCTTGGTCCTCTTGTAATTTGCACTAAAGTTACAAATGTCATTGCTTTACTTGATCCATTCACCTTAAGGCATTGCTTCTTGGATGCTGATCAGTATTGGCGGACATCCTTTAGGTCTCTACTTACGAGCAGGCAACTTGTGGAATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGTTCGAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATGACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCGCTTGGTTATGATCTTTATGGAGCCAATAGTAATGATATGGAGCTTGAAAAATATAAGGGTCTTGAGCTTCCAGAGGCAATTTTAATCAAGAAGAGTTATGAAGAAAAGCGTCAAAAAAAGCATGGAAAGCCTCGATCATGGAAACTTAAATCTCTTGAAATGGATGTTGATGATAGGGGTAGAGCAGAGGAAGATAATATGAACTCAAAGTATGAACAGTTTTTGAGAGATTTGGAGGAGAATCCAGATATGAGGTTCAACATATCATTGTATCGAAATAGGGAATACCAACCATCTGAAATGACTGATGGAGAAGATGACGGACCTTCGGTACCACTTGAAGAGTTGCTTGCTGATCTTGATCTAAGTGAAGGTGATAGAGATGATGCCATGCACGAGTAA

Protein sequence

MDGEVGLFAVHKTIGSILCCKCGIPITPNAANKLREYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKEVHGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSWKLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSEGDRDDAMHE

Homology

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BLAST of HG10005216 vs. NCBI nr
Match: XP_008440695.1 (PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo] >TYK12635.1 60S ribosomal export protein NMD3 [Cucumis melo var. makuwa])

HSP 1 Score: 855.1 bits (2208), Expect = 2.8e-244
Identity = 428/506 (84.58%), Postives = 454/506 (89.72%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLFAV +TIG++LCCKCGIP+TPNAAN                            
Sbjct: 1   MAAETGLFAVQQTIGTVLCCKCGIPMTPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRL+NLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V HGAI EQSY+VEYVVQDHLCESCSR+QANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLHGAILEQSYVVEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSDFGRNDT+F I+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQ+K GKPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL MDVDD+ + +E+ MNS+YEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE D
Sbjct: 421 KLKSLAMDVDDKSKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDGE-D 480

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BLAST of HG10005216 vs. NCBI nr
Match: KAA0036240.1 (60S ribosomal export protein NMD3 [Cucumis melo var. makuwa])

HSP 1 Score: 853.6 bits (2204), Expect = 8.2e-244
Identity = 427/506 (84.39%), Postives = 453/506 (89.53%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLFAV +TIG++LCCKCGIP+TPNAAN                            
Sbjct: 1   MAAETGLFAVQQTIGTVLCCKCGIPMTPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRL+NLNK KLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKAKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V HGAI EQSY+VEYVVQDHLCESCSR+QANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLHGAILEQSYVVEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSDFGRNDT+F I+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQ+K GKPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL MDVDD+ + +E+ MNS+YEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE D
Sbjct: 421 KLKSLAMDVDDKSKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDGE-D 480

[Close]

BLAST of HG10005216 vs. NCBI nr
Match: XP_022149109.1 (60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149117.1 60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149123.1 60S ribosomal export protein NMD3 [Momordica charantia])

HSP 1 Score: 851.7 bits (2199), Expect = 3.1e-243
Identity = 427/506 (84.39%), Postives = 450/506 (88.93%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M GE GLFAV +TIGS+LCCKCGIP+ PNAAN                            
Sbjct: 1   MAGEAGLFAVQQTIGSVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRLKNLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V +GAI EQSY+ EYVVQDH+CESCSRVQANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLNGAILEQSYVAEYVVQDHMCESCSRVQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEI PICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEICPICREDLICLPPKVAVSLGNLGPLVICTKVTNSIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEYI+LDIENVS EVNVGGSKY+LADAQV RVSDFGRNDTIF IR
Sbjct: 301 YWRTSFRSLLTSRQLVEYIILDIENVSAEVNVGGSKYVLADAQVARVSDFGRNDTIFSIR 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLY ANSNDMEL+KYKGL LPEAIL+KKSYEEKRQ+K GKPR+W
Sbjct: 361 THLGHILNPGDYALGYDLYAANSNDMELDKYKGLVLPEAILVKKSYEEKRQRKRGKPRAW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL+MDVDD+GR ++D MNS+YEQFLRDLEENPD+RFNISLYRNREYQ SEMTDGE D
Sbjct: 421 KLKSLDMDVDDKGRVDQDKMNSEYEQFLRDLEENPDLRFNISLYRNREYQLSEMTDGE-D 480

[Close]

BLAST of HG10005216 vs. NCBI nr
Match: XP_004143504.1 (60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical protein Csa_003669 [Cucumis sativus])

HSP 1 Score: 851.3 bits (2198), Expect = 4.1e-243
Identity = 426/506 (84.19%), Postives = 452/506 (89.33%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLF+V +TIG++LCCKCGIP+ PNAAN                            
Sbjct: 1   MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRL+NLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V  GAI EQSY+ EYVVQDHLCESCSR+QANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSDFGRNDT+F I+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQ+KHGKPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKHGKPRSW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL MDVDD+ + +E+ MNS+YEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE D
Sbjct: 421 KLKSLSMDVDDKTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDGE-D 480

[Close]

BLAST of HG10005216 vs. NCBI nr
Match: XP_038883907.1 (60S ribosomal export protein NMD3 isoform X1 [Benincasa hispida])

HSP 1 Score: 849.7 bits (2194), Expect = 1.2e-242
Identity = 429/506 (84.78%), Postives = 450/506 (88.93%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLFAV +TIGS+LCCKCGIP+ PNAAN                            
Sbjct: 97  MAAETGLFAVQQTIGSVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 156

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRLKNLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 157 ESYLQPPRTWIKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 216

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V HGAI EQSY+VEYVVQDHLCESCSRVQANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 217 VLHGAILEQSYVVEYVVQDHLCESCSRVQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 276

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEFIGKV  IRSRHDKQLVSHDPKSNIHNH
Sbjct: 277 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVVSIRSRHDKQLVSHDPKSNIHNH 336

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDA+Q
Sbjct: 337 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDAEQ 396

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV R+SDFGRNDTIF I+
Sbjct: 397 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARLSDFGRNDTIFSIK 456

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELP+AILIKKSYEEKR +K GKPR+W
Sbjct: 457 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPDAILIKKSYEEKRLRKRGKPRAW 516

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSLEMDVDD+G+AEED  NS+YEQFLRDLEENPD+RFNISLYRNREYQPSEMTDGE D
Sbjct: 517 KLKSLEMDVDDKGKAEEDKKNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEMTDGE-D 576

[Close]

BLAST of HG10005216 vs. ExPASy Swiss-Prot
Match: Q6GNS3 (60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 2.5e-110
Identity = 212/489 (43.35%), Postives = 309/489 (63.19%), Query Frame = 0


Query: 15  GSILCCKCGIPITPNAAN--------------------------KLREYLQPPQTWIKVQ 74
           G+ILCC+CGIPI PN AN                          +   YLQPP TWI+  
Sbjct: 13  GNILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCA 72

Query: 75  LESKELLTFCIKRLK-NLNKVKLVYAEFVWTEPHSKRIKVKLKVQKEV-HGAIFEQSYIV 134
           LES+ELLT C+K+LK NL+KV+L+ A F+WTEPHSKR+KVKL +QKEV +GAI +Q ++V
Sbjct: 73  LESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132

Query: 135 EYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILKHGAAARAIRIKQM 194
           +YVVQ  +C+ C RV+A  D W A VQ+RQ +LH++TF++LEQ ILKH      +R+K++
Sbjct: 133 DYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 192

Query: 195 DQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICR 254
             G+DF+++++ HG K VEF+    P R +  ++L+SHD  +N +N+K TFSVEI P+C+
Sbjct: 193 HDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 252

Query: 255 EDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQYWRTSFRSLLTSR 314
           ++L+CL PK+A  LGN+  + IC +VT+ I L+DP TL+   +D + YWR  F SL   +
Sbjct: 253 DNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPK 312

Query: 315 QLVEYIVLDIENVSTEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTHLGHILN 374
           Q+ E+IV+D E +       G     +K++LA+  V + S+       +  RTHLGH+LN
Sbjct: 313 QMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQQ-YHCRTHLGHLLN 372

Query: 375 PGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSWKLKSLEMD 434
           PGD  LG+DL   N ND  + K     +P+ +LIKKSY+  R+++    R+WKLK  EMD
Sbjct: 373 PGDLVLGFDLSNCNLNDEFINKMNPHHIPDVVLIKKSYDRARRQRR---RNWKLK--EMD 432

Query: 435 VDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEE 471
            D  G   +D    +Y+ FL DLEE+  +R N+++++N    P E    E+  P + L E
Sbjct: 433 RDREGMDTDD--ERQYQDFLEDLEEDELLRKNVNIFKNANV-PVESDTDEEGAPRISLAE 491

[Close]

BLAST of HG10005216 vs. ExPASy Swiss-Prot
Match: Q6P2Z6 (60S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 4.3e-110
Identity = 212/489 (43.35%), Postives = 308/489 (62.99%), Query Frame = 0


Query: 15  GSILCCKCGIPITPNAAN--------------------------KLREYLQPPQTWIKVQ 74
           G+ILCC+CGIPI PN AN                          +   YLQPP TWI+  
Sbjct: 13  GNILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCA 72

Query: 75  LESKELLTFCIKRLK-NLNKVKLVYAEFVWTEPHSKRIKVKLKVQKEV-HGAIFEQSYIV 134
           LES+ELLT C+K+LK NL+KV+L+ A F+WTEPHSKR+KVKL +QKEV +GAI +Q ++V
Sbjct: 73  LESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV 132

Query: 135 EYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILKHGAAARAIRIKQM 194
           +Y+VQ  +C+ C RV+A  D W A VQ+RQ +LH++TF++LEQ ILKH      +R+K++
Sbjct: 133 DYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 192

Query: 195 DQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICR 254
             G+DF+++++ H  K VEF+    P R +  ++L+SHD  +N +N+K TFSVEI P+C+
Sbjct: 193 HDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 252

Query: 255 EDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQYWRTSFRSLLTSR 314
           ++L+CL PK+A  LGN+  + IC +VT+ I L+DP TL+   +D + YWR+ F SL   +
Sbjct: 253 DNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHPK 312

Query: 315 QLVEYIVLDIENVSTEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTHLGHILN 374
           QL E+IV+D + V       G     +K+ILA+  V + S+       +  RTHLGH+LN
Sbjct: 313 QLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQ-YHCRTHLGHLLN 372

Query: 375 PGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEE-KRQKKHGKPRSWKLKSLEM 434
           PGD  LG+DL   N ND  + K     +P+ +LIKKSY+  KRQ++    R+WKLK +E 
Sbjct: 373 PGDLVLGFDLANCNLNDEFINKMNPHHIPDVVLIKKSYDRTKRQRR----RNWKLKEIER 432

Query: 435 DVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLE 470
           D +     +E     +Y+ FL DLEE+  +R N+++Y+N    P E    E+  P + L 
Sbjct: 433 DREGMDTDDE----RQYQDFLEDLEEDEVIRKNVNIYKNANL-PVESDTDEEGAPRISLA 490

[Close]

BLAST of HG10005216 vs. ExPASy Swiss-Prot
Match: Q08DS5 (60S ribosomal export protein NMD3 OS=Bos taurus OX=9913 GN=NMD3 PE=2 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.7e-106
Identity = 207/494 (41.90%), Postives = 307/494 (62.15%), Query Frame = 0


Query: 10  VHKTIGSILCCKCGIPITPNAAN--------------------------KLREYLQPPQT 69
           V  T G ILCC CG+PI+PN AN                          + + Y QPP T
Sbjct: 8   VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGT 67

Query: 70  WIKVQLESKELLTFCIKRLK-NLNKVKLVYAEFVWTEPHSKRIKVKLKVQKEV-HGAIFE 129
           W++  LES++LL  C+K++K  L+KV+LV A FVWTEPHSKR+KVKL +QKEV +GAI +
Sbjct: 68  WVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQ 127

Query: 130 QSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILKHGAAARAI 189
           Q ++V+YVVQ  +C  C RV+A  D W A VQ+RQ  LH++TF++LEQLILK+G     +
Sbjct: 128 QVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTL 187

Query: 190 RIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEI 249
           RIK++  G+DF++S++ H  K VEF+    P R +  ++L+S D  SN +N+K TFSVEI
Sbjct: 188 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEI 247

Query: 250 SPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQYWRTSFRS 309
            PIC+++++CL PK+A  LGN+  + +C +VT+VI L+DP TL+   +D + +W   F S
Sbjct: 248 VPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNS 307

Query: 310 LLTSRQLVEYIVLD---IENVSTEVNVG--GSKYILADAQVTRVSDFGRNDTIFFIRTHL 369
           L   +QL E+IV++   ++++      G    K+ L +  V + S+    D  +F RTHL
Sbjct: 308 LCHPKQLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEM-NTDKQYFCRTHL 367

Query: 370 GHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSWKLK 429
           GH+LNPGD  LG+DL   N ND  + K K   +P+ +LIKKSY+  R+++    R+WKLK
Sbjct: 368 GHLLNPGDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRR---RNWKLK 427

Query: 430 SLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPS 471
            L  D ++    +E     +Y+ FL DLEE+  +R N+++YR+    P E    ++  P 
Sbjct: 428 ELARDRENTDTDDE----RQYQDFLEDLEEDEAIRKNVNIYRDSTI-PVESDTDDEGAPR 487

[Close]

BLAST of HG10005216 vs. ExPASy Swiss-Prot
Match: Q5BLF0 (60S ribosomal export protein NMD3 OS=Danio rerio OX=7955 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.2e-106
Identity = 205/490 (41.84%), Postives = 309/490 (63.06%), Query Frame = 0


Query: 15  GSILCCKCGIPITPNAAN--------------------------KLREYLQPPQTWIKVQ 74
           G+ILCC CG+PI PN AN                          +   YLQPP +W++  
Sbjct: 13  GNILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCA 72

Query: 75  LESKELLTFCIKRLK-NLNKVKLVYAEFVWTEPHSKRIKVKLKVQKEV-HGAIFEQSYIV 134
           LES+ELL  C+K+LK +++KV+L+ A F+WTEPHSKRIK+KL +QKEV +GAI +Q + V
Sbjct: 73  LESRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQVFTV 132

Query: 135 EYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILKHGAAARAIRIKQM 194
           E+VVQ  +CE C RV+A  D W A VQ+RQ  +H++TF++LEQLILKH      +RIK++
Sbjct: 133 EFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEI 192

Query: 195 DQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICR 254
            +GIDF+++ + H  K V+F+    P RS+  ++L+SHD  SN +N+K TFSVEI P+C+
Sbjct: 193 HEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIVPVCK 252

Query: 255 EDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQYWRTSFRSLLTSR 314
           ++++CL P++A  LGN+G + +C +VT+ I L+DP TL+   +D   +WR  F SL + R
Sbjct: 253 DNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSLCSPR 312

Query: 315 QLVEYIVLDIENVSTE-----VNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHILN 374
           QL E+I++DI+ +  +       +  +K+ LA+  V + S+   +   +  RT +GH+LN
Sbjct: 313 QLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSHQ-YHCRTFMGHLLN 372

Query: 375 PGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSWKLKSLEMD 434
            GD  LG+D   AN ND  L K     +P+ +LIKKSY+   + K  + R WKLK ++ +
Sbjct: 373 IGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSYD---RMKRARKRVWKLKEMDRE 432

Query: 435 VDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDG-PSVPLE 471
            D    A + +   +Y +FL DLEE+  +R NI+++R+    P E +D +DDG P + L 
Sbjct: 433 KD----AADTDDERQYTEFLEDLEEDEMLRKNINIFRDASKIPVEESDTDDDGAPRISLA 492

[Close]

BLAST of HG10005216 vs. ExPASy Swiss-Prot
Match: Q55BF2 (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 8.3e-106
Identity = 204/458 (44.54%), Postives = 296/458 (64.63%), Query Frame = 0


Query: 16  SILCCKCGIPITPNAANK--------------------------LREYLQPPQTWIKVQL 75
           +ILCC CG+ I  N +N                              YLQPP  W   +L
Sbjct: 11  NILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPNHWAIAEL 70

Query: 76  ESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKEVH-GAIFEQSYIVEY 135
           ES+ELLT CIKR+K LNKVKLV A +VWTEPHSKR+KVKL +QKEV   AI +Q +I+E+
Sbjct: 71  ESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQIFIIEF 130

Query: 136 VVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILKHGAAARAIRIKQMDQ 195
           +VQ   C+ C + +A  D W + VQLRQ + H+RTF ++EQLILKH A ++ + IK+   
Sbjct: 131 IVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTLNIKEKPD 190

Query: 196 GIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICRED 255
           G+DFFFSNR+H +KFVEFI  + P++++  +QL+S D ++N  N+K+TFSVEI P+ ++D
Sbjct: 191 GLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFSVEIVPLSKDD 250

Query: 256 LICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQL 315
           ++CLPPK+A  LGN+GPLV+ TKV+N+I  +DP TL    + A  +W + FR+L + +QL
Sbjct: 251 IVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSPFRALSSYKQL 310

Query: 316 VEYIVLDIENVSTEVNVGGS---KYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDY 375
           VE+ VLD       VN+ G+   +Y L+D Q+ R +DFG ND I+ IR+HLG+ILNPGD 
Sbjct: 311 VEFTVLD-------VNLTGATRGRYALSDIQLMRSADFGANDNIYDIRSHLGNILNPGDL 370

Query: 376 ALGYDLYGANSNDMELE-KYKGLELPEAILIKKSYEEKRQKKHGKPRSWKLKSLEMD-VD 435
           ALGYD+  +N  D +L    K  +LP+ +L+KK+Y  K   +    R W  K +  + ++
Sbjct: 371 ALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKNDFRF--KRHWYFKEIPKEGIE 430

Query: 436 DRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNRE 442
           +  + E D M    E+FLR++E +P++R  I++Y+  +
Sbjct: 431 NPKKFEIDQMERDREEFLREIEADPELRSKINIYKEAD 458

[Close]

BLAST of HG10005216 vs. ExPASy TrEMBL
Match: A0A5D3CM67 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002220 PE=3 SV=1)

HSP 1 Score: 855.1 bits (2208), Expect = 1.4e-244
Identity = 428/506 (84.58%), Postives = 454/506 (89.72%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLFAV +TIG++LCCKCGIP+TPNAAN                            
Sbjct: 1   MAAETGLFAVQQTIGTVLCCKCGIPMTPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRL+NLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V HGAI EQSY+VEYVVQDHLCESCSR+QANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLHGAILEQSYVVEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSDFGRNDT+F I+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQ+K GKPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL MDVDD+ + +E+ MNS+YEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE D
Sbjct: 421 KLKSLAMDVDDKSKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDGE-D 480

[Close]

BLAST of HG10005216 vs. ExPASy TrEMBL
Match: A0A1S3B197 (60S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 SV=1)

HSP 1 Score: 855.1 bits (2208), Expect = 1.4e-244
Identity = 428/506 (84.58%), Postives = 454/506 (89.72%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLFAV +TIG++LCCKCGIP+TPNAAN                            
Sbjct: 1   MAAETGLFAVQQTIGTVLCCKCGIPMTPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRL+NLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V HGAI EQSY+VEYVVQDHLCESCSR+QANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLHGAILEQSYVVEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSDFGRNDT+F I+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQ+K GKPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL MDVDD+ + +E+ MNS+YEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE D
Sbjct: 421 KLKSLAMDVDDKSKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDGE-D 480

[Close]

BLAST of HG10005216 vs. ExPASy TrEMBL
Match: A0A5A7SYS9 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G00380 PE=3 SV=1)

HSP 1 Score: 853.6 bits (2204), Expect = 4.0e-244
Identity = 427/506 (84.39%), Postives = 453/506 (89.53%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLFAV +TIG++LCCKCGIP+TPNAAN                            
Sbjct: 1   MAAETGLFAVQQTIGTVLCCKCGIPMTPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRL+NLNK KLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKAKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V HGAI EQSY+VEYVVQDHLCESCSR+QANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLHGAILEQSYVVEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSDFGRNDT+F I+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQ+K GKPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL MDVDD+ + +E+ MNS+YEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE D
Sbjct: 421 KLKSLAMDVDDKSKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDGE-D 480

[Close]

BLAST of HG10005216 vs. ExPASy TrEMBL
Match: A0A6J1D613 (60S ribosomal export protein NMD3 OS=Momordica charantia OX=3673 GN=LOC111017597 PE=3 SV=1)

HSP 1 Score: 851.7 bits (2199), Expect = 1.5e-243
Identity = 427/506 (84.39%), Postives = 450/506 (88.93%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M GE GLFAV +TIGS+LCCKCGIP+ PNAAN                            
Sbjct: 1   MAGEAGLFAVQQTIGSVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRLKNLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V +GAI EQSY+ EYVVQDH+CESCSRVQANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLNGAILEQSYVAEYVVQDHMCESCSRVQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEI PICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEICPICREDLICLPPKVAVSLGNLGPLVICTKVTNSIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEYI+LDIENVS EVNVGGSKY+LADAQV RVSDFGRNDTIF IR
Sbjct: 301 YWRTSFRSLLTSRQLVEYIILDIENVSAEVNVGGSKYVLADAQVARVSDFGRNDTIFSIR 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLY ANSNDMEL+KYKGL LPEAIL+KKSYEEKRQ+K GKPR+W
Sbjct: 361 THLGHILNPGDYALGYDLYAANSNDMELDKYKGLVLPEAILVKKSYEEKRQRKRGKPRAW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL+MDVDD+GR ++D MNS+YEQFLRDLEENPD+RFNISLYRNREYQ SEMTDGE D
Sbjct: 421 KLKSLDMDVDDKGRVDQDKMNSEYEQFLRDLEENPDLRFNISLYRNREYQLSEMTDGE-D 480

[Close]

BLAST of HG10005216 vs. ExPASy TrEMBL
Match: A0A0A0KGY6 (60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=3 SV=1)

HSP 1 Score: 851.3 bits (2198), Expect = 2.0e-243
Identity = 426/506 (84.19%), Postives = 452/506 (89.33%), Query Frame = 0


Query: 1   MDGEVGLFAVHKTIGSILCCKCGIPITPNAAN--------------------------KL 60
           M  E GLF+V +TIG++LCCKCGIP+ PNAAN                            
Sbjct: 1   MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60

Query: 61  REYLQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKE 120
             YLQPP+TWIK QLESKELLTFCIKRL+NLNKVKLV+AEFVWTEPHSKRIKVKLKVQKE
Sbjct: 61  ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120

Query: 121 V-HGAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILK 180
           V  GAI EQSY+ EYVVQDHLCESCSR+QANPDQWVASVQLRQH+ HRRTFFFLEQLILK
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESCSRIQANPDQWVASVQLRQHVPHRRTFFFLEQLILK 180

Query: 181 HGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNH 240
           HGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+GKVAPIRSRHDKQLVSHDPKSNIHNH
Sbjct: 181 HGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIHNH 240

Query: 241 KHTFSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQ 300
           KHTFSVEISPICREDLICLPPKVAV LGNLGPLVICTKVTN IALLDPFTLRHCFLDADQ
Sbjct: 241 KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQ 300

Query: 301 YWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIR 360
           YWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+LA AQV RVSDFGRNDT+F I+
Sbjct: 301 YWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFSIK 360

Query: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQKKHGKPRSW 420
           THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQ+KHGKPRSW
Sbjct: 361 THLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKHGKPRSW 420

Query: 421 KLKSLEMDVDDRGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDD 480
           KLKSL MDVDD+ + +E+ MNS+YEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE D
Sbjct: 421 KLKSLSMDVDDKTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDGE-D 480

[Close]

BLAST of HG10005216 vs. TAIR 10
Match: AT2G03820.1 (nonsense-mediated mRNA decay NMD3 family protein )

HSP 1 Score: 630.2 bits (1624), Expect = 1.4e-180
Identity = 328/506 (64.82%), Postives = 391/506 (77.27%), Query Frame = 0


Query: 4   EVGLFAVHKTIGSILCCKCGIPITPNAANK----LRE----------------------Y 63
           E G+F V +TIGS+LCCKCG+P+ PNAAN     LR                       Y
Sbjct: 6   ESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCY 65

Query: 64  LQPPQTWIKVQLESKELLTFCIKRLKNLNKVKLVYAEFVWTEPHSKRIKVKLKVQKEV-H 123
           LQPP+TWIK Q ESKELLTFCIKRLKNLNKVKL  AEFVWTEPHSKRIKVKL VQ EV +
Sbjct: 66  LQPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLN 125

Query: 124 GAIFEQSYIVEYVVQDHLCESCSRVQANPDQWVASVQLRQHILHRRTFFFLEQLILKHGA 183
           GA+ EQSY VEY V+D+LCESCSR QANPDQWVAS+QLRQH+ HRRTFF+LEQLIL+H A
Sbjct: 126 GAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHDA 185

Query: 184 AARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHT 243
           A+RAIRI+Q+DQGIDFFF N+SH   FVEF+ KV PI  R D+QLVSHD KS+++N+K+T
Sbjct: 186 ASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYT 245

Query: 244 FSVEISPICREDLICLPPKVAVGLGNLGPLVICTKVTNVIALLDPFTLRHCFLDADQYWR 303
           +SV+I P+CREDL+CLP KVA GLGNLGPLV+CTKV++ I LLDP TLR  FLDA QYWR
Sbjct: 246 YSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYWR 305

Query: 304 TSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHL 363
           + FRS LTSRQLV+Y V D+E    E  VGG KY L+  Q+ R SD G+   +F+++THL
Sbjct: 306 SGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYVQTHL 365

Query: 364 GHILNPGDYALGYDLYGANSNDMELEKYK---GLELPEAILIKKSYEEKRQKKHGKPRSW 423
           GHIL PGD ALGYD+YGAN ND E+EKY+      LPEAILIKK YEE+R++K  K R+W
Sbjct: 366 GHILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNW 425

Query: 424 KLKSLEMDVDD-RGRAEEDNMNSKYEQFLRDLEENPDMRFNISLYRNREYQPSE---MTD 476
           KLKSL M++DD RGR + +  + +YE+FLRDLEENP++RFNISLYR+++YQ SE   MTD
Sbjct: 426 KLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTD 485

The following BLAST results are available for this feature:

BLAST of HG10005216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440695.1	2.8e-244	84.58	PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo] >TYK12635.1 60S ribo...	[more]
KAA0036240.1	8.2e-244	84.39	60S ribosomal export protein NMD3 [Cucumis melo var. makuwa]	[more]
XP_022149109.1	3.1e-243	84.39	60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149117.1 60S ribo...	[more]
XP_004143504.1	4.1e-243	84.19	60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical pro...	[more]
XP_038883907.1	1.2e-242	84.78	60S ribosomal export protein NMD3 isoform X1 [Benincasa hispida]	[more]

BLAST of HG10005216 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6GNS3	2.5e-110	43.35	60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1	[more]
Q6P2Z6	4.3e-110	43.35	60S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=...	[more]
Q08DS5	1.7e-106	41.90	60S ribosomal export protein NMD3 OS=Bos taurus OX=9913 GN=NMD3 PE=2 SV=1	[more]
Q5BLF0	2.2e-106	41.84	60S ribosomal export protein NMD3 OS=Danio rerio OX=7955 GN=nmd3 PE=2 SV=1	[more]
Q55BF2	8.3e-106	44.54	60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 P...	[more]

BLAST of HG10005216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CM67	1.4e-244	84.58	60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3B197	1.4e-244	84.58	60S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 S...	[more]
A0A5A7SYS9	4.0e-244	84.39	60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1D613	1.5e-243	84.39	60S ribosomal export protein NMD3 OS=Momordica charantia OX=3673 GN=LOC111017597...	[more]
A0A0A0KGY6	2.0e-243	84.19	60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=...	[more]

BLAST of HG10005216 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03820.1	1.4e-180	64.82	nonsense-mediated mRNA decay NMD3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 459..479
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 438..479
None	No IPR available	PANTHER	PTHR12746:SF4	60S RIBOSOMAL EXPORT PROTEIN NMD3	coord: 36..473
None	No IPR available	PANTHER	PTHR12746:SF4	60S RIBOSOMAL EXPORT PROTEIN NMD3	coord: 5..33
IPR007064	Nmd3, N-terminal	PFAM	PF04981	NMD3	coord: 40..221 e-value: 4.1E-54 score: 183.6
IPR039768	Ribosomal export protein Nmd3	PANTHER	PTHR12746	NONSENSE-MEDIATED MRNA DECAY PROTEIN 3	coord: 36..473
IPR039768	Ribosomal export protein Nmd3	PANTHER	PTHR12746	NONSENSE-MEDIATED MRNA DECAY PROTEIN 3	coord: 5..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005216.1	HG10005216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0000055	ribosomal large subunit export from nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043023	ribosomal large subunit binding