HG10005160 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005160
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase EL5
Location	Chr07: 133474 .. 135220 (-)
RNA-Seq Expression	HG10005160
Synteny	HG10005160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGACGTTCTACTAATTTTCCTCCAGGAATTTGGCAGGCCAGAAGGGAATATGATCGCCAGAGATATAACAGAAATGATTCAAACCATACGAACTCTACATCGTCGCATCCTCATTCATCTCAGGTCAGCGGGTTAACAATTCTTTTGTTTTGCAACAAACTGTATTCCAATCCCACGGCCACCATCAAAGCTTATGTTGTTATTCTACGCCATGATTTTCAGGCCATAAAACAGAACTTGTAGATCTAGATCACATTTAAATTTCCTGTTGATAGTTCTCCTAGTTTTCATATATTAGTACTTGAGAAGTTAAGGAGATGATAACAATCGTATTAGCTCATGCTCGTTCATATGTTGTCAGAATTCTTATAGAGAGATAGATCCAGTTCCATGGCGACCTGCTGGGGAGACAATGATTGCAAGAATATTGGACATCGGGAGGTAAATAACAAAACAAAAGAGCTTAATAGTTTTATAAGAGCTGTTTGGTGTTTTGGATTGAATTATAGGCAAACCAAAGAAGTTGGTATTGCAGATTCACTTCGTAAAATGATCTGAAATTAAGAGAATTTAGAGGCCAGGCAAAGTTTGCGGTACATTGCCTGAAAATAACATGAACTAGAACTAGTATCTAACTCAGGAAGATATAACTTGACAGAGAAGTCAGAAGTCCATGACTTTCACTAGTGGAAGAATTTGGGGAAACAAATCATCAAGTGTCAGAAATGGGGTTGAGCTCCAGTTCCTTCTTAGTTGGAGATTATTTTACACACGGGAGTTCAACAACATTCAACATCACACAATGCATTAAGCAGAAATTTGTTCAACAATAATCCACATTCAACATCACACAATGCATTAAGCAGAAATTTGTTCAACAATAATCCATATTACAATTTGCAGGGAAATAGAAATATGACATTCTCACTTGATTGAATTGCTTATGATATATAGCTATAACTTTTGAGAAGAATATATAGCAATAACTCTCAATTTTTGTCATGACTCATGAGCAGCATCCAAATTTGCAATAACAAACAAAATCCCCTTTGACAATATCAGTTGGTTTTAGAGGGAATCTACTTACATTGTCCTTATATCCTGCAAGTAAAGTCCATATCCTCCATACTTTGTTGATAATTCATTCACCTTTTGAGAAATTTCCAGCCCTCCAGAAGAACCACCTGCAATAGTCAGAATCATCACACACTCCAGACTGAGACAGCGTGAGGCCAGTCCAATACCTGCGGAGCTGTACTCGCCAACTCCAAGATCCGAAGGGAACTCGACGCTAACATCTGAAGAGCAACATATGGCACTGAATAAGCTCAAGAAAAAAGTGTATGATCCTCCGAGTAACACAAGTAGGAGAATAAGCTTCTATTACAGAGAGAATAACAGAGGAAATTACAATGAGAGGAACAACAGCAACAGTGATGAAGAAGGCAAGAGATGCGCCGTTTGCCTTGAAGATTTCCAGCCAAAAGAGGAGGTGATGACAACGCCCTGCAACCATATGTTCCACGAAGAATGCATAGTTCCATGGGTGAAGAGCAATGGCCAATGTCCGGTCTGCAGATTTACCTTGTTCGAGCGAACAGCTCGAAGAGAAGCTTCGTCCAACAACACTGTATCAACTGCGCCGCCTAGTAGCCTAGTCGACGACGAGCTCATGTACTTGATACGAGCCATGGAAGATGCTCTGATGCTGCGAAATCTGGCCGGATTTTGGGGAGCATGA

mRNA sequence

ATGAGCAGACGTTCTACTAATTTTCCTCCAGGAATTTGGCAGGCCAGAAGGGAATATGATCGCCAGAGATATAACAGAAATGATTCAAACCATACGAACTCTACATCGTCGCATCCTCATTCATCTCAGAATTCTTATAGAGAGATAGATCCAGTTCCATGGCGACCTGCTGGGGAGACAATGATTGCAAGAATATTGGACATCGGGAGCCCTCCAGAAGAACCACCTGCAATAGTCAGAATCATCACACACTCCAGACTGAGACAGCGTGAGGCCAGTCCAATACCTGCGGAGCTGTACTCGCCAACTCCAAGATCCGAAGGGAACTCGACGCTAACATCTGAAGAGCAACATATGGCACTGAATAAGCTCAAGAAAAAAGTGTATGATCCTCCGAGTAACACAAGTAGGAGAATAAGCTTCTATTACAGAGAGAATAACAGAGGAAATTACAATGAGAGGAACAACAGCAACAGTGATGAAGAAGGCAAGAGATGCGCCGTTTGCCTTGAAGATTTCCAGCCAAAAGAGGAGGTGATGACAACGCCCTGCAACCATATGTTCCACGAAGAATGCATAGTTCCATGGGTGAAGAGCAATGGCCAATGTCCGGTCTGCAGATTTACCTTGTTCGAGCGAACAGCTCGAAGAGAAGCTTCGTCCAACAACACTGTATCAACTGCGCCGCCTAGTAGCCTAGTCGACGACGAGCTCATGTACTTGATACGAGCCATGGAAGATGCTCTGATGCTGCGAAATCTGGCCGGATTTTGGGGAGCATGA

Coding sequence (CDS)

ATGAGCAGACGTTCTACTAATTTTCCTCCAGGAATTTGGCAGGCCAGAAGGGAATATGATCGCCAGAGATATAACAGAAATGATTCAAACCATACGAACTCTACATCGTCGCATCCTCATTCATCTCAGAATTCTTATAGAGAGATAGATCCAGTTCCATGGCGACCTGCTGGGGAGACAATGATTGCAAGAATATTGGACATCGGGAGCCCTCCAGAAGAACCACCTGCAATAGTCAGAATCATCACACACTCCAGACTGAGACAGCGTGAGGCCAGTCCAATACCTGCGGAGCTGTACTCGCCAACTCCAAGATCCGAAGGGAACTCGACGCTAACATCTGAAGAGCAACATATGGCACTGAATAAGCTCAAGAAAAAAGTGTATGATCCTCCGAGTAACACAAGTAGGAGAATAAGCTTCTATTACAGAGAGAATAACAGAGGAAATTACAATGAGAGGAACAACAGCAACAGTGATGAAGAAGGCAAGAGATGCGCCGTTTGCCTTGAAGATTTCCAGCCAAAAGAGGAGGTGATGACAACGCCCTGCAACCATATGTTCCACGAAGAATGCATAGTTCCATGGGTGAAGAGCAATGGCCAATGTCCGGTCTGCAGATTTACCTTGTTCGAGCGAACAGCTCGAAGAGAAGCTTCGTCCAACAACACTGTATCAACTGCGCCGCCTAGTAGCCTAGTCGACGACGAGCTCATGTACTTGATACGAGCCATGGAAGATGCTCTGATGCTGCGAAATCTGGCCGGATTTTGGGGAGCATGA

Protein sequence

MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGETMIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMALNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREASSNNTVSTAPPSSLVDDELMYLIRAMEDALMLRNLAGFWGA

Homology

[Close]

BLAST of HG10005160 vs. NCBI nr
Match: XP_038888228.1 (uncharacterized protein LOC120078088 isoform X1 [Benincasa hispida])

HSP 1 Score: 481.9 bits (1239), Expect = 3.5e-132
Identity = 241/262 (91.98%), Postives = 246/262 (93.89%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARREYDRQRYNRNDSN  NST SH +S QNSYRE+DPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNRINSTPSHTNSFQNSYREVDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           MIARILDIG P EEPPAIVRIIT SR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  MIARILDIGRPREEPPAIVRIITSSRPRQLEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           L KLKK VYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM
Sbjct: 121 LTKLKKNVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREAS--SNNTVSTAPPSSLVDDEL 240
           TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERT RR AS  SNNTVSTAPPSSL+DD+L
Sbjct: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTERRGASSNSNNTVSTAPPSSLIDDDL 240

Query: 241 MYLIRAMEDALMLRNLAGFWGA 261
           MYLIRAMEDALMLRNLAGFWGA
Sbjct: 241 MYLIRAMEDALMLRNLAGFWGA 262

[Close]

BLAST of HG10005160 vs. NCBI nr
Match: XP_008455285.1 (PREDICTED: E3 ubiquitin-protein ligase RNF12 isoform X1 [Cucumis melo])

HSP 1 Score: 463.4 bits (1191), Expect = 1.3e-126
Identity = 235/263 (89.35%), Postives = 243/263 (92.40%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARREYDRQRYNRN+SN  NST SH  S QNSYREIDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREYDRQRYNRNESNRVNSTPSHTQSFQNSYREIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           MI RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  MITRILDIGSLPEEPPAIVRIITHSRPRQIEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRI+FYYRENNR NYNER+N+NSDEEGK CAVCLEDFQPKEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRINFYYRENNRVNYNERHNNNSDEEGKGCAVCLEDFQPKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFE-RTARREASS--NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKSNGQCPVCRFTLFE RT RR ASS  NN VS APPSSLVDDE
Sbjct: 181 TTPCNHMFHEQCIVPWVKSNGQCPVCRFTLFERRTERRGASSNFNNNVSIAPPSSLVDDE 240

Query: 241 LMYLIRAMEDALMLRNLAGFWGA 261
           LMYLIRAME+ALMLRN+A FWGA
Sbjct: 241 LMYLIRAMEEALMLRNVAEFWGA 263

[Close]

BLAST of HG10005160 vs. NCBI nr
Match: TYK07001.1 (E3 ubiquitin-protein ligase RNF12 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 233/261 (89.27%), Postives = 242/261 (92.72%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARREYDRQRYNRN+SN  NST SH  S QNSYREIDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREYDRQRYNRNESNRVNSTPSHTQSFQNSYREIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           MI RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  MITRILDIGSLPEEPPAIVRIITHSRPRQIEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRI+FYYRENNR NYNER+N+NSDEEGK CAVCLEDFQPKEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRINFYYRENNRVNYNERHNNNSDEEGKGCAVCLEDFQPKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFE-RTARREASS--NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKSNGQCPVCRFTLFE RT RR ASS  NN+VS APPSSLVDDE
Sbjct: 181 TTPCNHMFHEQCIVPWVKSNGQCPVCRFTLFERRTERRGASSNFNNSVSIAPPSSLVDDE 240

Query: 241 LMYLIRAMEDALMLRNLAGFW 259
           LMYLIRAME+ALMLRN+A FW
Sbjct: 241 LMYLIRAMEEALMLRNVAEFW 261

[Close]

BLAST of HG10005160 vs. NCBI nr
Match: XP_004136838.1 (E3 ubiquitin-protein ligase AIRP1 [Cucumis sativus] >KGN43640.1 hypothetical protein Csa_017086 [Cucumis sativus])

HSP 1 Score: 458.8 bits (1179), Expect = 3.2e-125
Identity = 229/263 (87.07%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARRE+DRQRYNRN+SN TNST SH  S QNSYR+IDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREHDRQRYNRNESNRTNSTPSHTQSFQNSYRQIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           +I RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  VITRILDIGSRPEEPPAIVRIITHSRPRQLEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRISFYYRENNR N NER+NSN DEEGKRCAVCLEDFQPKEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRVNSNERHNSNGDEEGKRCAVCLEDFQPKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREASS---NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKS+GQCPVCRFTLFERT RR ++S   NN+VS APPSSLVD+E
Sbjct: 181 TTPCNHMFHEQCIVPWVKSHGQCPVCRFTLFERTERRGSASSNFNNSVSIAPPSSLVDEE 240

Query: 241 LMYLIRAMEDALMLRNLAGFWGA 261
           L+YLIRAME+ALMLRN+A FWGA
Sbjct: 241 LVYLIRAMEEALMLRNVAEFWGA 263

[Close]

BLAST of HG10005160 vs. NCBI nr
Match: KAA0031548.1 (E3 ubiquitin-protein ligase RNF12 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 232/261 (88.89%), Postives = 241/261 (92.34%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARREYDRQRYNRN+SN  NST SH  S QNSYREIDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREYDRQRYNRNESNRVNSTPSHTQSFQNSYREIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           MI RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  MITRILDIGSLPEEPPAIVRIITHSRPRQIEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRI+FYYRENNR NYNER+N+NSDEEGK CAVCLEDFQ KEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRINFYYRENNRVNYNERHNNNSDEEGKGCAVCLEDFQSKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFE-RTARREASS--NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKSNGQCPVCRFTLFE RT RR ASS  NN+VS APPSSLVDDE
Sbjct: 181 TTPCNHMFHEQCIVPWVKSNGQCPVCRFTLFERRTERRGASSNFNNSVSIAPPSSLVDDE 240

Query: 241 LMYLIRAMEDALMLRNLAGFW 259
           LMYLIRAME+ALMLRN+A FW
Sbjct: 241 LMYLIRAMEEALMLRNVAEFW 261

[Close]

BLAST of HG10005160 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-11
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 163 GKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREASS 222
           G  C VC ED+  +EEV   PCNH FH  CIVPW++ +  CPVCR +L    + R++ S
Sbjct: 225 GLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQS 283

[Close]

BLAST of HG10005160 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-11
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 166 CAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREASSNNTV 225
           CAVC E F+ + E    PC H+FH++CIVPW+     CPVCRF L     RR  S+NN  
Sbjct: 199 CAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSEPNRR--SNNNEE 258

Query: 226 STA 229
             A
Sbjct: 259 DNA 259

[Close]

BLAST of HG10005160 vs. ExPASy Swiss-Prot
Match: Q9C1X4 (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.2e-11
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 160 DEEGKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREA 219
           DEEG+ C +C+E F+  ++V+  PC H FHE CI PW++ NG C +CR  +   + +R  
Sbjct: 391 DEEGE-CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNN 450

Query: 220 SSNNTVSTAPPSS 233
           +S ++ +   PS+
Sbjct: 451 TSTDSANGHNPSN 462

[Close]

BLAST of HG10005160 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.4e-11
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 163 GKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTL-----FERTARR 222
           G  C VC ED+  +E+V   PCNH FH  CIVPW++ +  CPVCR +L       +T   
Sbjct: 226 GLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSS 285

Query: 223 EASSNNTVS 227
           EAS++N  S
Sbjct: 286 EASASNRFS 294

[Close]

BLAST of HG10005160 vs. ExPASy Swiss-Prot
Match: Q91YL2 (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 163 GKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLF-ERTARRE--- 222
           G  C VC ED+   E V   PCNH+FH+ CIVPW++ +  CPVCR +L  + TA      
Sbjct: 228 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPGL 287

Query: 223 -----ASSNNTVSTAPPSS 233
                +SS+++ S++ PS+
Sbjct: 288 TGVGFSSSSSSSSSSSPSN 306

[Close]

BLAST of HG10005160 vs. ExPASy TrEMBL
Match: A0A1S3C054 (E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495488 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.3e-127
Identity = 235/263 (89.35%), Postives = 243/263 (92.40%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARREYDRQRYNRN+SN  NST SH  S QNSYREIDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREYDRQRYNRNESNRVNSTPSHTQSFQNSYREIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           MI RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  MITRILDIGSLPEEPPAIVRIITHSRPRQIEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRI+FYYRENNR NYNER+N+NSDEEGK CAVCLEDFQPKEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRINFYYRENNRVNYNERHNNNSDEEGKGCAVCLEDFQPKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFE-RTARREASS--NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKSNGQCPVCRFTLFE RT RR ASS  NN VS APPSSLVDDE
Sbjct: 181 TTPCNHMFHEQCIVPWVKSNGQCPVCRFTLFERRTERRGASSNFNNNVSIAPPSSLVDDE 240

Query: 241 LMYLIRAMEDALMLRNLAGFWGA 261
           LMYLIRAME+ALMLRN+A FWGA
Sbjct: 241 LMYLIRAMEEALMLRNVAEFWGA 263

[Close]

BLAST of HG10005160 vs. ExPASy TrEMBL
Match: A0A5D3C526 (E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003170 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 7.0e-126
Identity = 233/261 (89.27%), Postives = 242/261 (92.72%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARREYDRQRYNRN+SN  NST SH  S QNSYREIDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREYDRQRYNRNESNRVNSTPSHTQSFQNSYREIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           MI RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  MITRILDIGSLPEEPPAIVRIITHSRPRQIEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRI+FYYRENNR NYNER+N+NSDEEGK CAVCLEDFQPKEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRINFYYRENNRVNYNERHNNNSDEEGKGCAVCLEDFQPKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFE-RTARREASS--NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKSNGQCPVCRFTLFE RT RR ASS  NN+VS APPSSLVDDE
Sbjct: 181 TTPCNHMFHEQCIVPWVKSNGQCPVCRFTLFERRTERRGASSNFNNSVSIAPPSSLVDDE 240

Query: 241 LMYLIRAMEDALMLRNLAGFW 259
           LMYLIRAME+ALMLRN+A FW
Sbjct: 241 LMYLIRAMEEALMLRNVAEFW 261

[Close]

BLAST of HG10005160 vs. ExPASy TrEMBL
Match: A0A0A0K1V1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G049220 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.6e-125
Identity = 229/263 (87.07%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARRE+DRQRYNRN+SN TNST SH  S QNSYR+IDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREHDRQRYNRNESNRTNSTPSHTQSFQNSYRQIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           +I RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  VITRILDIGSRPEEPPAIVRIITHSRPRQLEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRISFYYRENNR N NER+NSN DEEGKRCAVCLEDFQPKEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRVNSNERHNSNGDEEGKRCAVCLEDFQPKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREASS---NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKS+GQCPVCRFTLFERT RR ++S   NN+VS APPSSLVD+E
Sbjct: 181 TTPCNHMFHEQCIVPWVKSHGQCPVCRFTLFERTERRGSASSNFNNSVSIAPPSSLVDEE 240

Query: 241 LMYLIRAMEDALMLRNLAGFWGA 261
           L+YLIRAME+ALMLRN+A FWGA
Sbjct: 241 LVYLIRAMEEALMLRNVAEFWGA 263

[Close]

BLAST of HG10005160 vs. ExPASy TrEMBL
Match: A0A5A7SLQ9 (E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G003130 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.9e-125
Identity = 232/261 (88.89%), Postives = 241/261 (92.34%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNSYREIDPVPWRPAGET 60
           MSRRSTNFPPGIWQARREYDRQRYNRN+SN  NST SH  S QNSYREIDPVPWRPAGET
Sbjct: 1   MSRRSTNFPPGIWQARREYDRQRYNRNESNRVNSTPSHTQSFQNSYREIDPVPWRPAGET 60

Query: 61  MIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSEEQHMA 120
           MI RILDIGS PEEPPAIVRIITHSR RQ EASPIPAELYSPTPRSEGNSTLTSEEQ+MA
Sbjct: 61  MITRILDIGSLPEEPPAIVRIITHSRPRQIEASPIPAELYSPTPRSEGNSTLTSEEQNMA 120

Query: 121 LNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSNSDEEGKRCAVCLEDFQPKEEVM 180
           LNKLKKKVYDPPSNTSRRI+FYYRENNR NYNER+N+NSDEEGK CAVCLEDFQ KEEVM
Sbjct: 121 LNKLKKKVYDPPSNTSRRINFYYRENNRVNYNERHNNNSDEEGKGCAVCLEDFQSKEEVM 180

Query: 181 TTPCNHMFHEECIVPWVKSNGQCPVCRFTLFE-RTARREASS--NNTVSTAPPSSLVDDE 240
           TTPCNHMFHE+CIVPWVKSNGQCPVCRFTLFE RT RR ASS  NN+VS APPSSLVDDE
Sbjct: 181 TTPCNHMFHEQCIVPWVKSNGQCPVCRFTLFERRTERRGASSNFNNSVSIAPPSSLVDDE 240

Query: 241 LMYLIRAMEDALMLRNLAGFW 259
           LMYLIRAME+ALMLRN+A FW
Sbjct: 241 LMYLIRAMEEALMLRNVAEFW 261

[Close]

BLAST of HG10005160 vs. ExPASy TrEMBL
Match: A0A6J1JPC8 (E3 ubiquitin-protein ligase EL5 OS=Cucurbita maxima OX=3661 GN=LOC111486293 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 7.5e-112
Identity = 210/281 (74.73%), Postives = 226/281 (80.43%), Query Frame = 0


Query: 1   MSRRSTNFPPGIWQARREYDRQRYNRNDSNHTNSTSSHPHSSQNS--------------- 60
           MSRRSTNFPPG+W+ARREYDRQRYN NDSN  +STS HP   QNS               
Sbjct: 1   MSRRSTNFPPGLWRARREYDRQRYNTNDSNRMSSTSPHPQPFQNSSRDTEPIPSRPTRGI 60

Query: 61  -------YREIDPVPWRPAGETMIARILDIGSPPEEPPAIVRIITHSRLRQREASPIPAE 120
                   RE+DP+PWRP G  MIAR+L+I    E+PPAIVRIITHSR RQ EAS  PAE
Sbjct: 61  DPVPSRPTRELDPIPWRPTGGAMIARLLEIVGQLEDPPAIVRIITHSRPRQIEASSRPAE 120

Query: 121 LYSPTPRSEGNSTLTSEEQHMALNKLKKKVYDPPSNTSRRISFYYRENNRGNYNERNNSN 180
           LY PTPRSEGNSTLTSEEQ+MALNKLKKKVYDPP+N SRRISFYYRENNR NYNER N  
Sbjct: 121 LYRPTPRSEGNSTLTSEEQNMALNKLKKKVYDPPNNASRRISFYYRENNRRNYNERRNGE 180

Query: 181 SDEEGKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARRE 240
           +DE+GKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKS+GQCP CRFTLFERT RRE
Sbjct: 181 NDEDGKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSHGQCPNCRFTLFERTVRRE 240

Query: 241 ASSNNTVSTAPPSSLVDDELMYLIRAMEDALMLRNLAGFWG 260
           ASSNNT S A  S+LVDDEL+YLIRAMED+LMLRNL G WG
Sbjct: 241 ASSNNTASIASGSNLVDDELVYLIRAMEDSLMLRNLTGLWG 281

[Close]

BLAST of HG10005160 vs. TAIR 10
Match: AT3G58720.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 9.9e-32
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 71  PPEEPPAIVRIITHSRLRQREASPIPAELYSPTPRSEGNSTLTSE--EQHMALNKLKKKV 130
           PP      + I   + LR++    +   +++ + R E +S  +S+  E+   L  L K+ 
Sbjct: 43  PPSHTRHQIPIRNSNNLRRQHLEALRQAVHNQSTRPESSSRSSSQTNEEDEILKHLTKET 102

Query: 131 YD--PPSNTSRRISFYYRENNRGNYNERNNSN--SDEEGKRCAVCLEDFQPKEEVMTTPC 190
           Y+  P S   R +S YYR  N G+ + RN  N   +E+ KRC+VCLEDF+PKE VM TPC
Sbjct: 103 YNPVPKSTLLRSLSLYYRNKNPGSESSRNTQNLSGEEDDKRCSVCLEDFEPKETVMLTPC 162

Query: 191 NHMFHEECIVPWVKSNGQCPVCRFTLFERTARRE---ASSNNTVSTAPPSSLVDDELMYL 250
            HMFHEECIVPW+K+ GQCPVCRF + + T +     A+ +N       + L   EL+ +
Sbjct: 163 KHMFHEECIVPWLKTKGQCPVCRFVILKPTKQDSSPPANGSNLTGDMTTNDLFTLELLSV 222

Query: 251 IRAMEDALMLRN 254
           +RAME+  +  N
Sbjct: 223 VRAMEETFLFGN 234

[Close]

BLAST of HG10005160 vs. TAIR 10
Match: AT3G58720.2 (RING/U-box superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 9.9e-32
Identity = 83/226 (36.73%), Postives = 124/226 (54.87%), Query Frame = 0


Query: 37  SHPHSSQNSYREIDPVPWRPAGETMIARILDIGSPPEEPPAIVRIITHSRLRQREASPIP 96
           S  +S  N +   DP+       T I+  +D+  PP      + I   + LR++    + 
Sbjct: 40  SRSNSIVNRHLIDDPI--SAYSRTSISSTVDL-VPPSHTRHQIPIRNSNNLRRQHLEALR 99

Query: 97  AELYSPTPRSEGNSTLTSE--EQHMALNKLKKKVYD--PPSNTSRRISFYYRENNRGNYN 156
             +++ + R E +S  +S+  E+   L  L K+ Y+  P S   R +S YYR  N G+ +
Sbjct: 100 QAVHNQSTRPESSSRSSSQTNEEDEILKHLTKETYNPVPKSTLLRSLSLYYRNKNPGSES 159

Query: 157 ERNNSN--SDEEGKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTL 216
            RN  N   +E+ KRC+VCLEDF+PKE VM TPC HMFHEECIVPW+K+ GQCPVCRF +
Sbjct: 160 SRNTQNLSGEEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVI 219

Query: 217 FERTARRE---ASSNNTVSTAPPSSLVDDELMYLIRAMEDALMLRN 254
            + T +     A+ +N       + L   EL+ ++RAME+  +  N
Sbjct: 220 LKPTKQDSSPPANGSNLTGDMTTNDLFTLELLSVVRAMEETFLFGN 262

[Close]

BLAST of HG10005160 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-12
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 166 CAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREASSNNTV 225
           CAVC E F+ + E    PC H+FH++CIVPW+     CPVCRF L     RR  S+NN  
Sbjct: 199 CAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSEPNRR--SNNNEE 258

Query: 226 STA 229
             A
Sbjct: 259 DNA 259

[Close]

BLAST of HG10005160 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 155 NNSNSDEEGKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTL 211
           ++++SD+    CA+C EDF   E     PCNH++H +CI+PW+ S+  CP+CR  L
Sbjct: 85  SSASSDDSALPCAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVEL 140

[Close]

BLAST of HG10005160 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-11
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 161 EEGKRCAVCLEDFQPKEEVMTTPCNHMFHEECIVPWVKSNGQCPVCRFTLFERTARREA- 220
           EE  +C+VCL+DF+   E    PC H FH +C++PW++ +  CPVCR+ L    A+ ++ 
Sbjct: 218 EETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADEAKTDSV 277

Query: 221 ---SSNNTVSTA 229
              S NN  S+A
Sbjct: 278 TTTSDNNGSSSA 289

The following BLAST results are available for this feature:

BLAST of HG10005160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888228.1	3.5e-132	91.98	uncharacterized protein LOC120078088 isoform X1 [Benincasa hispida]	[more]
XP_008455285.1	1.3e-126	89.35	PREDICTED: E3 ubiquitin-protein ligase RNF12 isoform X1 [Cucumis melo]	[more]
TYK07001.1	1.4e-125	89.27	E3 ubiquitin-protein ligase RNF12 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_004136838.1	3.2e-125	87.07	E3 ubiquitin-protein ligase AIRP1 [Cucumis sativus] >KGN43640.1 hypothetical pro...	[more]
KAA0031548.1	1.2e-124	88.89	E3 ubiquitin-protein ligase RNF12 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of HG10005160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y4L5	4.2e-11	47.46	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]
Q940T5	5.5e-11	47.62	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
Q9C1X4	7.2e-11	38.36	Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra...	[more]
Q9D0C1	9.4e-11	44.93	E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1	[more]
Q91YL2	2.1e-10	40.51	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]

BLAST of HG10005160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C054	6.3e-127	89.35	E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5D3C526	7.0e-126	89.27	E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0K1V1	1.6e-125	87.07	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G049220 P...	[more]
A0A5A7SLQ9	5.9e-125	88.89	E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1JPC8	7.5e-112	74.73	E3 ubiquitin-protein ligase EL5 OS=Cucurbita maxima OX=3661 GN=LOC111486293 PE=4...	[more]

BLAST of HG10005160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58720.1	9.9e-32	39.06	RING/U-box superfamily protein	[more]
AT3G58720.2	9.9e-32	36.73	RING/U-box superfamily protein	[more]
AT5G59550.1	3.9e-12	47.62	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G44330.1	1.5e-11	42.86	RING/U-box superfamily protein	[more]
AT1G55530.1	1.9e-11	40.28	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 166..206 e-value: 1.8E-9 score: 47.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 165..207 e-value: 3.2E-14 score: 53.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 166..207 score: 13.536741
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 150..226 e-value: 1.1E-21 score: 77.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..114
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 116..253
None	No IPR available	PANTHER	PTHR22765:SF328	ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN	coord: 116..253
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 166..207 e-value: 1.19934E-19 score: 77.7273
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 157..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005160.1	HG10005160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity