HG10005146 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005146
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
LocationChr08: 23186981 .. 23191044 (+)
RNA-Seq ExpressionHG10005146
SyntenyHG10005146
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGTTATTTTACTTATTTATTTTTCCTTTTTTGCTATTCGCTCTTTTTCGATTTGGAGGTATGTTGGAACTATACGAGTCAGTAATGTAATGTCGTCTTCTTCGGCTCCAAGATTTGGCATTTCTCAATTTCAATGGCCACAACTTTTTATTTTTTTTAAAACTAGTTTCTTGGATTTAATCCATGCTATTTTCTGCTTCTATTTCCCTAGAGAGGTGATAAATTTTCTTTTCTAAAATATAAGTATTGACCCCAGTTCTTTAAAGTACACTTACTGGGTTGGCTCATCTATTTTTACCCATCCACGATCAAGATATGGGATTTTATGCATTTCTCTACTTACTGAAGATAATCATCATGACGGCTCAGTGTTTTTATGCTAAATGTCGCTGCTTCTTTAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCTAGTTTTAGGCTTTTAGCTCATTCCATATTGTCAAAATTAGCTCACCTGAAATTTCTAACATATACACTTCGATAAGATATTAAGATCTTTGAGGTTTATTGTAGTTAGACGATTCTTCAAGTTATTGCAATCTGATATTCGTGTTTTGTAATTGATACATGTTTTGTTAAACCACCTATCAGAACCATATTCTAACTTTTTATTGATTCCATAATCCACTGAGGTAATCATGTTCCGTTATGCCCCCATTTGTTCGGACGTAACCGGTTGTTATGGTAAATAGCGATTTCCCGTTTTTCATGCTTCCAAAAAGACATAAGTATGAACTTGTCGTGTGATAAATTGATCGAGAGGCCTTCCAATTGTTTGTTAATCTATAGTTTCTGTCTCTATGTTAAATTACTGTTACCATTAGAAACATAACTGCTTGGTTAGAGTTAATTCAAAAAAGGAAAAAAAAAGTAACATTTGATAAATTTATAGAAATGCCATGCAATTGTGTTTTAACCTTTGTTTTCTGTTTCTATGTTAAATTACTGCTACTAGAAGACTAATTGTTTGGTTAGACTTAATTTAAGATCTTGGATTGTTTGTGCTATTTTCCCGTGGGTTTGAATTTTTGTTTGTTAATGAGGTTTGATACATTTACTGTTGATTTTGAAATCTTGATCAGATGCCTGTGCAAGAATTTTTAATTCAATATCTTCTGATTCAGTATCATTTTTAAGTTATCACTAATTCCGGACAACATACTAATGACAAGCAGTGATTTAACTCTATGAATTGTTAAAGTTTCTGGTGTAATATTAATTTCTAGAATTGAATCAAATGAATCTCTACCTCTAAATGAGGGGAGATGACCTTTATTTATAGGAAAAATGTGAGTACAAGTTTGTTAAAGAAAGCTAACAAATCAAAATAACAAACAAACTATTTAACAACTAACTCACTTAACAACTAACAATTGACTGTTTGACTAACAAACTAAAACTTACAAACTGTAGTTTTGTTATTACACCATATTCCACCCCCTTAAGATTAGACTCATCCTCAAGGAAATTATGATGCCAATTGGAAATCATCAGGGGCAAAGTAAGGCTTTAAGTTAGCAACATTAAATACCGGATTGATAGGTAAATCACTTGGTAATTCAATGCGGTATGCATTGGAACCATACTTCTCCAACACTTTGAAGGGTCCCAATTGTCTATCTTTCAATTTGTTGTAAGTGCCGGTAGGAAATCTAGCTTTTTGTAGATGAATCATGACTAAGTCTCCTTCTTCAAAATCAACTACCCTTCGAGATTTGTCTTTAGTTTCTTTGTGAGATAAAGTGGTCTTCTCTAAATGATCGTGGACTTCTCGATGAAGCTCTTCAATTCATTCAACCATGTTCTCCGCTTCGATGCTAACATCCACAAATGAAGGAAGATTAGCAAGGTCAAAAGTGAGACGAGGAGCTCAAATGTATACTACTTCAAAAGGACATCTTCCGGTAGATCTATTCTTCATGTTATTAAAAGCAAATCGGCTTGTGCTAGGGACAAATTCCATTGTTTTGGCCTTGAACCACTTAAGCATCGAATGAGATTCCCCAACGTTCTATTAGTCACCTCTGTTTAACCGTTAGTTTGAGGATGTGAAGTAGTGCTGAATTTCAAAGTAGTATCAAATTTCTTCCACATAGTGCGCCAGAAATGGCTAAAGAACTTCACATTTCGATCTGAAACAATTGTCTTAGGAACTTTATGAAGTCGAACAACTTCTCTAAAGAAGAGATTGGCTATATAAATTGCATCGTTTGTCTTCTTACAAGCCAAGAAGTGAGCCATCTTGCTGAATCGATCTACGACTACCATTACAGCATCATAACCTCTTTGTGTCTTTGGTAATCCAAGGACAAAATCAATAGACAAATCCTCCCAAATAGATGTAGGTATAGGCAGCGGCGAATATAGGCCAACATTAGTGCTTGTGCCTTTGGCAAATGGAACATCTTTTAACAAAGTTATTTGTATCTCTTTGAAGTTGCGGCCAATAAAACTGAGTTGATACTATTTCAAATGTTTTATTTTGGCCAAAATGTCCAGCCGAGCCTCCTGAATGGGCGTTTTTTATAAGTGCCTCTCGAAGAGAAGTATGTGGAATACACAGTTGTTCTCCTTTGAATAAGAAACCATCCACAATATGGAAGTCCTTCAACCTGAACATAGGTGGGCAACGTGTGCAAGACCAAGTGGCGGAGGAAACACCCGTCCTTTCTTCAAGAAGTACAACGGTATGCTTGCTGTCCGTTGAAGACTCTTTGGGAGATATTCATGAAAAGTTGGATAGTGTGCAAGAATCGATGAAAACACTAGCGAGAAAGATGGAATTACTGACATCTCCTCAACATAGCGAAAATGTCCCGACATTCATTCAAGAATGAGGGAGTTGGGAGGAGAGGCAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAAAGGGAGAACTGTATGACTATAAAATGAAAATGGACTTACCATTCAACCATTCCATAACGACAAACGTGGCATTGAGGCATTTCTTGATTGGATCAAGAACATTGAAAACTTCTTTATCTACATGAATACTCCGGATCACGAGAAGGTACGGTTGGTGGCCTTGAAATTAAAAGTTGGTGCCTCCACATGGTGGGAGCAATTAGAAGTCAATAGGCAAAGAAGCGGCAAGAGAACTTCTTGGTAAAAGATGAAGCGTTTGATGAAGGAGCGTTGCCTCCCTCCCAATTATGAGAAAACACTCTATAATCAATATCAAAATTGTCGACCATGCCTACGAACTATAGCTGATTACATTGAAAAATTTCACCGATTGAGAGCAAGAAAAAATTTGGTGGAGAATGAACAACACTTAGTTGCAAGATTCATAGGGGCTTGTTGATGGACATCAAAGAAAAGGTAAAACTACAAAAATTTCATTTGTTAGCTGATGCAATTTCTTATGCTGAAACAGTGGAAGAGTTAAATGAAATTCGCTCCCAAAAACTTCAAGAAAGGCTCATTGGGATGCTTCCGTAAGCAGAAAAGTAACTACTTCGAACAACAATTCTGCCCATCCTTTTCCATCAACATCAATCAAAGATGAGAATGAAGAAAATCAAGAAGGAGATTGA

mRNA sequence

ATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGCGAAAATGTCCCGACATTCATTCAAGAATGAGGGAGTTGGGAGGAGAGGCAGGCATGGTGCTGGTCGACCAGGAAAAGTAACTACTTCGAACAACAATTCTGCCCATCCTTTTCCATCAACATCAATCAAAGATGAGAATGAAGAAAATCAAGAAGGAGATTGA

Coding sequence (CDS)

ATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGCGAAAATGTCCCGACATTCATTCAAGAATGAGGGAGTTGGGAGGAGAGGCAGGCATGGTGCTGGTCGACCAGGAAAAGTAACTACTTCGAACAACAATTCTGCCCATCCTTTTCCATCAACATCAATCAAAGATGAGAATGAAGAAAATCAAGAAGGAGATTGA

Protein sequence

MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEAKMSRHSFKNEGVGRRGRHGAGRPGKVTTSNNNSAHPFPSTSIKDENEENQEGD
Homology
[Close]
BLAST of HG10005146 vs. NCBI nr
Match: XP_038885251.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-39
Identity = 93/102 (91.18%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKTLRISSSSAR LLHRSS SPSASHFVSKPT+SAGLP AKP ASSR  VQKLT
Sbjct: 1   MAACCSWKTLRISSSSARTLLHRSSSSPSASHFVSKPTMSAGLPSAKPPASSRFYVQKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSE 103
           NFRLPVELSSVQSLMPLH+VTASALFTSLLSLHNNSWG LSE
Sbjct: 61  NFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGYLSE 102

[Close]
BLAST of HG10005146 vs. NCBI nr
Match: XP_022996536.1 (uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953.1 uncharacterized protein LOC111805899 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 4.4e-37
Identity = 90/103 (87.38%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAAC +WKTLRISSSSAR LL RSS SPSASH VSKPT+SA LP AKPSASSR SV KLT
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEA 104
           NFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSEA
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEA 103

[Close]
BLAST of HG10005146 vs. NCBI nr
Match: KAG7029191.1 (hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-36
Identity = 90/107 (84.11%), Postives = 94/107 (87.85%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKL 60
           MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KL
Sbjct: 44  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEAKMS 107
           TNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSE  +S
Sbjct: 104 TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLS 150

[Close]
BLAST of HG10005146 vs. NCBI nr
Match: XP_004145570.1 (uncharacterized protein LOC101210124 [Cucumis sativus] >KGN55566.1 hypothetical protein Csa_012846 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-35
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LT
Sbjct: 1   MAACCSWKTIPISSSSARGLLHRSSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEA 104
           NFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCLS+A
Sbjct: 61  NFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSKA 103

[Close]
BLAST of HG10005146 vs. NCBI nr
Match: XP_022961783.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6598206.1 hypothetical protein SDJN03_07984, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-35
Identity = 89/103 (86.41%), Postives = 92/103 (89.32%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKL 60
           MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSE 103
           TNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSE
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 103

[Close]
BLAST of HG10005146 vs. ExPASy TrEMBL
Match: A0A6J1K524 (uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491756 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 90/103 (87.38%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAAC +WKTLRISSSSAR LL RSS SPSASH VSKPT+SA LP AKPSASSR SV KLT
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEA 104
           NFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSEA
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEA 103

[Close]
BLAST of HG10005146 vs. ExPASy TrEMBL
Match: A0A0A0L605 (Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.9e-36
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LT
Sbjct: 1   MAACCSWKTIPISSSSARGLLHRSSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEA 104
           NFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCLS+A
Sbjct: 61  NFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSKA 103

[Close]
BLAST of HG10005146 vs. ExPASy TrEMBL
Match: A0A6J1HCT7 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462447 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 89/103 (86.41%), Postives = 92/103 (89.32%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKL 60
           MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSE 103
           TNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCLSE
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 103

[Close]
BLAST of HG10005146 vs. ExPASy TrEMBL
Match: A0A6J1E309 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111025568 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.4e-35
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACC+WKTLR+SSSS R L+ RSS S SASHFVS+PT   GLP AKP+AS R SVQKLT
Sbjct: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSE 103
           N RLPVELSSVQSLMPLH+VTASALFTSLLSLHNNSWGCLSE
Sbjct: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 102

[Close]
BLAST of HG10005146 vs. ExPASy TrEMBL
Match: A0A5D3D8K9 (Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00010 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLT 60
           MAACCSWKT+ ISSSSARALLHR S SPSASHFVS PT+S GL  A+P+ASSR SVQ+LT
Sbjct: 1   MAACCSWKTIPISSSSARALLHRPSSSPSASHFVSIPTMSGGLHSARPAASSRFSVQRLT 60

Query: 61  NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEA 104
           NF LPVEL+S+QSLMPL +VTASALFTSLLS HNNS  CLS+A
Sbjct: 61  NFSLPVELASMQSLMPLRSVTASALFTSLLSFHNNSRRCLSKA 103

[Close]
BLAST of HG10005146 vs. TAIR 10
Match: AT1G70350.1 (unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-14
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 0 

Query: 1   MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASS-RLSVQKL 60
           MAA    + L+ SSSS + L  RSS + SA    SK   SAG+ F   S+SS R S+++L
Sbjct: 1   MAANGVRRALQASSSSGKILFGRSSAATSA----SKIGKSAGIAFGNGSSSSTRPSLRRL 60

Query: 61  TNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSE 103
           T  R+PVELS+  SL+PLH+VTASAL TSLLSL N +W CLSE
Sbjct: 61  TFSRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSE 99

[Close]
BLAST of HG10005146 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 5.2e-04
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 0 

Query: 15  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQ 74
           +S+  +   SS   S +  +SK  +  + LP    S+S   +  ++  +FRLPVELS   
Sbjct: 2   ASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVELSCCL 61

Query: 75  SLMPLHNVTASALFTSLLSLHNNSWGCLSEAK 105
           S++PLH+  ASA   S LS+ + SWG + + +
Sbjct: 62  SMLPLHSAIASARLISSLSVESKSWGLVPQGQ 93

[Close]
BLAST of HG10005146 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 6.8e-04
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 0 

Query: 15  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQ 74
           +S+  +   SS   S +  +SK  +  + LP    S+S   +  ++  +FRLPVELS   
Sbjct: 2   ASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVELSCCL 61

Query: 75  SLMPLHNVTASALFTSLLSLHNNSWGCLSE 103
           S++PLH+  ASA   S LS+ + SWG + +
Sbjct: 62  SMLPLHSAIASARLISSLSVESKSWGLVPQ 91

The following BLAST results are available for this feature:
BLAST of HG10005146 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038885251.12.8e-3991.18protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida][more]
XP_022996536.14.4e-3787.38uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953... [more]
KAG7029191.14.9e-3684.11hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_004145570.11.4e-3581.55uncharacterized protein LOC101210124 [Cucumis sativus] >KGN55566.1 hypothetical ... [more]
XP_022961783.13.2e-3586.41protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita mosch... [more]
BLAST of HG10005146 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10005146 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K5242.1e-3787.38uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0L6056.9e-3681.55Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190... [more]
A0A6J1HCT71.5e-3586.41protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita mos... [more]
A0A6J1E3094.4e-3582.35protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha... [more]
A0A5D3D8K93.5e-3278.64Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. maku... [more]
BLAST of HG10005146 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70350.12.5e-1454.37unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bac... [more]
AT1G55205.25.2e-0433.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55205.16.8e-0434.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..156
NoneNo IPR availablePANTHERPTHR33156:SF2OS01G0738000 PROTEINcoord: 1..104
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005146.1HG10005146.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070475 rRNA base methylation
biological_process GO:0030488 tRNA methylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008173 RNA methyltransferase activity