HG10005089 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005089
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	Chr08: 22803403 .. 22804011 (-)
RNA-Seq Expression	HG10005089
Synteny	HG10005089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAAACCACAACACCCCAAAGCCAATCCCCAAACCCATCTCCCTCCTCTCTCTCCAAAACCTTCCCAAAGGACTAATCTCATCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTTCAACCTTGAGCTCATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCTGATGGCGACAACCGCGGTTTAGCCCTTTTGCTACCTCTTATTCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAATCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGCTTATGTACGCACCTGATGCTTCGGCCAGCGAGATCGCCATGATTGCCGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCACCAGCCATTCTTTGGGTGCTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

mRNA sequence

ATGGCAGCTACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAAACCACAACACCCCAAAGCCAATCCCCAAACCCATCTCCCTCCTCTCTCTCCAAAACCTTCCCAAAGGACTAATCTCATCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTTCAACCTTGAGCTCATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCTGATGGCGACAACCGCGGTTTAGCCCTTTTGCTACCTCTTATTCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAATCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGCTTATGTACGCACCTGATGCTTCGGCCAGCGAGATCGCCATGATTGCCGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCACCAGCCATTCTTTGGGTGCTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Coding sequence (CDS)

ATGGCAGCTACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAAACCACAACACCCCAAAGCCAATCCCCAAACCCATCTCCCTCCTCTCTCTCCAAAACCTTCCCAAAGGACTAATCTCATCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTTCAACCTTGAGCTCATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCTGATGGCGACAACCGCGGTTTAGCCCTTTTGCTACCTCTTATTCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAATCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGCTTATGTACGCACCTGATGCTTCGGCCAGCGAGATCGCCATGATTGCCGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCACCAGCCATTCTTTGGGTGCTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Protein sequence

MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of HG10005089 vs. NCBI nr
Match: XP_038886078.1 (LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 366.3 bits (939), Expect = 1.7e-97
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGL+SSKSNQNSNLST 
Sbjct: 53  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLVSSKSNQNSNLSTI 112

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 113 LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 172

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 173 NQINKMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 232

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 233 ILWVLYNILQPALNQLNRMRSE 254

[Close]

BLAST of HG10005089 vs. NCBI nr
Match: XP_004142959.3 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 6.0e-95
Identity = 195/202 (96.53%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSNQNSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+TL SSDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of HG10005089 vs. NCBI nr
Match: KGN62604.2 (hypothetical protein Csa_018753 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 6.0e-95
Identity = 195/202 (96.53%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSNQNSNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+TL SSDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of HG10005089 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo] >KAA0061043.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 354.4 bits (908), Expect = 6.6e-94
Identity = 193/202 (95.54%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSN+NSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of HG10005089 vs. NCBI nr
Match: KAG7029231.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.4 bits (908), Expect = 6.6e-94
Identity = 192/202 (95.05%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINST+NHNTPK IPKPISLLSLQNLPKGLISSKSN +SNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFS LSSSDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASG MYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of HG10005089 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 6.1e-50
Identity = 127/209 (60.77%), Postives = 154/209 (73.68%), Query Frame = 0


Query: 1   MAATMA-TMAVLSVKCTSINSTKNHNT-PKPIPKPISLLSLQNLPKGLISSKSNQNSNLS 60
           MAATMA TMAVL+ KC ++N+ K  +T PKP  KPISL      P GL +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKLPM--GLS 60

Query: 61  TFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAAD---GDNRGLALLLPLIPAIAWVLFNI 120
             +++ AIAGAVF+TL S DPAFA QQ+A+IAA+    DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 121 LQPALNQINRMRSD-KGVIIGLGLGGLTASGLMYA-PDASASEIAMIADASSSDSRGQLL 180
           LQPALNQIN+MR++ K  I+GLGL GL  SGL+ A P+A A+   +   A  SD+RG LL
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLL 180

Query: 181 LFVVAPAILWVLYNILQPALNQLNRMRSE 203
           L VV PAI WVL+NILQPALNQLN+MRS+
Sbjct: 181 LLVVLPAIGWVLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of HG10005089 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-46
Identity = 118/205 (57.56%), Postives = 146/205 (71.22%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAA MAT    + KC S+N       P P PK    L  Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-------PSP-PK----LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVFS+LS S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGL-GGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFV 180
           PA+NQ+N+MR  KG+++GLG+ GGL ASGL+  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VAPAILWVLYNILQPALNQLNRMRS 202
           V PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of HG10005089 vs. ExPASy TrEMBL
Match: A0A0A0LKA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.9e-95
Identity = 195/202 (96.53%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSNQNSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+TL SSDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of HG10005089 vs. ExPASy TrEMBL
Match: A0A5A7UYJ2 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001790 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.2e-94
Identity = 193/202 (95.54%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSN+NSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of HG10005089 vs. ExPASy TrEMBL
Match: A0A1S3B9R1 (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.2e-94
Identity = 193/202 (95.54%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSN+NSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of HG10005089 vs. ExPASy TrEMBL
Match: A0A6J1BQF3 (photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004808 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 184/202 (91.09%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAATMATMAVLSVKCTSINS+KNH TPKPI  PISLLSLQNLPK LISSK++QN NLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFS  SSSDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGL AS  MYAPDASA+EIAMIADASSSD+RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of HG10005089 vs. ExPASy TrEMBL
Match: F6GVJ9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.1e-77
Identity = 163/202 (80.69%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAAT+ATMA+L+ KC SINS KN N  KP  KPISLLS+QNLPKGL + KS++N NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           L+ TAIAGA+FSTLSS DPA AAQQIAEI ADGDNRGLALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQ+N+MRS KGVIIGLGLGGL ASG M  P ASASEIA +ADA+SSD+RGQLLLFVV PA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]

BLAST of HG10005089 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-47
Identity = 118/205 (57.56%), Postives = 146/205 (71.22%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60
           MAA MAT    + KC S+N       P P PK    L  Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-------PSP-PK----LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVFS+LS S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGL-GGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFV 180
           PA+NQ+N+MR  KG+++GLG+ GGL ASGL+  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VAPAILWVLYNILQPALNQLNRMRS 202
           V PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of HG10005089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886078.1	1.7e-97	98.02	LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-li...	[more]
XP_004142959.3	6.0e-95	96.53	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
KGN62604.2	6.0e-95	96.53	hypothetical protein Csa_018753 [Cucumis sativus]	[more]
XP_008444395.1	6.6e-94	95.54	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel...	[more]
KAG7029231.1	6.6e-94	95.05	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of HG10005089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	6.1e-50	60.77	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	1.8e-46	57.56	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of HG10005089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKA1	2.9e-95	96.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
A0A5A7UYJ2	3.2e-94	95.54	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B9R1	3.2e-94	95.54	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
A0A6J1BQF3	1.1e-89	91.09	photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia ...	[more]
F6GVJ9	6.1e-77	80.69	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]

BLAST of HG10005089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	1.3e-47	57.56	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 167..199 e-value: 1.8E-10 score: 40.5 coord: 94..126 e-value: 2.7E-14 score: 52.7
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 94..128 score: 10.933356
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 1..202
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005089.1	HG10005089.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0051119	sugar transmembrane transporter activity