HG10005056 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005056
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	Chr08: 22582604 .. 22582894 (-)
RNA-Seq Expression	HG10005056
Synteny	HG10005056

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAATTGCTCTGAGTCAGCTTGCCACCGGCCTGAGCGTGCTGGCCGGCGCCGTGGTGGTGAAGTCCGTCATCGAACAGAAACTACCGACGGCCGGGATGATGCCGAGGTGTCCGGCTTGTAATGGCACGGGTCGGGTCACATGCCTATGTGCCCGGTGGTCGGATGGAGATGTTGGGTGCCGATCATGTTCCGGGTCGGGTCGGATGTCGTGCAGAAGTTGTGGTGGTGGCGGAAGAGGGCGGCCGATCACCTTACAATTATCCACTAACCAACCTAAATTTTGA

mRNA sequence

ATGGATCCAATTGCTCTGAGTCAGCTTGCCACCGGCCTGAGCGTGCTGGCCGGCGCCGTGGTGGTGAAGTCCGTCATCGAACAGAAACTACCGACGGCCGGGATGATGCCGAGGTGTCCGGCTTGTAATGGCACGGGTCGGGTCACATGCCTATGTGCCCGGTGGTCGGATGGAGATGTTGGGTGCCGATCATGTTCCGGGTCGGGTCGGATGTCGTGCAGAAGTTGTGGTGGTGGCGGAAGAGGGCGGCCGATCACCTTACAATTATCCACTAACCAACCTAAATTTTGA

Coding sequence (CDS)

ATGGATCCAATTGCTCTGAGTCAGCTTGCCACCGGCCTGAGCGTGCTGGCCGGCGCCGTGGTGGTGAAGTCCGTCATCGAACAGAAACTACCGACGGCCGGGATGATGCCGAGGTGTCCGGCTTGTAATGGCACGGGTCGGGTCACATGCCTATGTGCCCGGTGGTCGGATGGAGATGTTGGGTGCCGATCATGTTCCGGGTCGGGTCGGATGTCGTGCAGAAGTTGTGGTGGTGGCGGAAGAGGGCGGCCGATCACCTTACAATTATCCACTAACCAACCTAAATTTTGA

Protein sequence

MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDVGCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQPKF

Homology

[Close]

BLAST of HG10005056 vs. NCBI nr
Match: KAA0061011.1 (uncharacterized protein E6C27_scaffold501G001460 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MD IAL+QLATGLSVLAGAVVVKSVIEQKLP AG MPRCP C G+GRVTCLC RWSDGDV
Sbjct: 1  MDQIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCLCVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQ 94
          GCRSCSGSGRMSCRSCGGGGRGRPI++QLST+Q
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQ 93

[Close]

BLAST of HG10005056 vs. NCBI nr
Match: XP_004142934.1 (uncharacterized protein LOC101220122 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MD IALSQLATGLSVLAGAVVVKSVIEQKLP AG MPRCP C G+GRVTC+C RWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQ 94
          GCRSCSGSGRMSCRSCGGGGRGRPIT+QLS +Q
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQ 93

[Close]

BLAST of HG10005056 vs. NCBI nr
Match: KAG6585227.1 (hypothetical protein SDJN03_17960, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020147.1 hypothetical protein SDJN02_16829, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 4.6e-37
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MDPIALSQ+ATGLSVLAGAVVVKSVIEQK P A  MPRC  CNG+GRVTCLC RWSDGDV
Sbjct: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQK-PMARPMPRCATCNGSGRVTCLCVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCRSCSGSGRMSCRSCGGGGRGRPIT+QLS +QP
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSASQP 93

[Close]

BLAST of HG10005056 vs. NCBI nr
Match: XP_022132135.1 (uncharacterized protein LOC111005075 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-34
Identity = 74/94 (78.72%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MDP+ L+QLATGLSV+AGAVVVKSV++QK P AG +P CP CNG+GRVTC+C RWSDGD 
Sbjct: 1  MDPMGLAQLATGLSVVAGAVVVKSVMDQK-PMAGPLPTCPTCNGSGRVTCICVRWSDGDF 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCRSC+GSGRMSCRSCGGGGRGRPIT+QLS  QP
Sbjct: 61 GCRSCAGSGRMSCRSCGGGGRGRPITVQLSAGQP 93

[Close]

BLAST of HG10005056 vs. NCBI nr
Match: XP_010100228.1 (uncharacterized protein LOC21384964 [Morus notabilis] >EXB81983.1 hypothetical protein L484_001360 [Morus notabilis])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M+PI L+Q+ATGLSVL GAV+VKSV++QK P AG  PRCP+CNGTGRVTCLC+RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM C SCGG G GRPIT Q+S  +P
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRP 93

[Close]

BLAST of HG10005056 vs. ExPASy TrEMBL
Match: A0A5A7V5E2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001460 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.1e-39
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MD IAL+QLATGLSVLAGAVVVKSVIEQKLP AG MPRCP C G+GRVTCLC RWSDGDV
Sbjct: 1  MDQIALTQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCLCVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQ 94
          GCRSCSGSGRMSCRSCGGGGRGRPI++QLST+Q
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPISVQLSTSQ 93

[Close]

BLAST of HG10005056 vs. ExPASy TrEMBL
Match: A0A0A0LKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351540 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MD IALSQLATGLSVLAGAVVVKSVIEQKLP AG MPRCP C G+GRVTC+C RWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQ 94
          GCRSCSGSGRMSCRSCGGGGRGRPIT+QLS +Q
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQ 93

[Close]

BLAST of HG10005056 vs. ExPASy TrEMBL
Match: A0A6J1BRL0 (uncharacterized protein LOC111005075 OS=Momordica charantia OX=3673 GN=LOC111005075 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.1e-35
Identity = 74/94 (78.72%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MDP+ L+QLATGLSV+AGAVVVKSV++QK P AG +P CP CNG+GRVTC+C RWSDGD 
Sbjct: 1  MDPMGLAQLATGLSVVAGAVVVKSVMDQK-PMAGPLPTCPTCNGSGRVTCICVRWSDGDF 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCRSC+GSGRMSCRSCGGGGRGRPIT+QLS  QP
Sbjct: 61 GCRSCAGSGRMSCRSCGGGGRGRPITVQLSAGQP 93

[Close]

BLAST of HG10005056 vs. ExPASy TrEMBL
Match: W9RCB8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M+PI L+Q+ATGLSVL GAV+VKSV++QK P AG  PRCP+CNGTGRVTCLC+RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM C SCGG G GRPIT Q+S  +P
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRP 93

[Close]

BLAST of HG10005056 vs. ExPASy TrEMBL
Match: A0A2P5BPE6 (Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_222020 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 69/94 (73.40%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI L+QLATGLSVLAGAV+VKSV++QK P AG  PRCP+CNGTGRV+CLC+RWSDGDV
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVSCLCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+CSGSGRM+C SCGG G GRPI  Q++  +P
Sbjct: 61 GCRTCSGSGRMACSSCGGSGTGRPIPAQITVRRP 93

[Close]

BLAST of HG10005056 vs. TAIR 10
Match: AT5G43260.1 (chaperone protein dnaJ-related )

HSP 1 Score: 137.5 bits (345), Expect = 5.6e-33
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI ++QLATG+SVLAGAV +KSV++QK P AG  PRCP CNGTGRVTC C+RWSDGDV
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQK-PMAGQFPRCPTCNGTGRVTCFCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR CSGSGR +C +CGG G GRP+  Q++   P
Sbjct: 61 GCRRCSGSGRAACSNCGGSGTGRPLPAQITVQPP 93

The following BLAST results are available for this feature:

BLAST of HG10005056 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061011.1	1.9e-38	88.17	uncharacterized protein E6C27_scaffold501G001460 [Cucumis melo var. makuwa]	[more]
XP_004142934.1	2.5e-38	88.17	uncharacterized protein LOC101220122 [Cucumis sativus]	[more]
KAG6585227.1	4.6e-37	87.23	hypothetical protein SDJN03_17960, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022132135.1	1.3e-34	78.72	uncharacterized protein LOC111005075 [Momordica charantia]	[more]
XP_010100228.1	1.0e-31	72.34	uncharacterized protein LOC21384964 [Morus notabilis] >EXB81983.1 hypothetical p...	[more]

BLAST of HG10005056 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005056 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5E2	9.1e-39	88.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LKQ8	1.2e-38	88.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351540 PE=4 SV=1	[more]
A0A6J1BRL0	6.1e-35	78.72	uncharacterized protein LOC111005075 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
W9RCB8	4.8e-32	72.34	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001360 PE=4 SV=1	[more]
A0A2P5BPE6	1.4e-31	73.40	Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia a...	[more]

BLAST of HG10005056 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43260.1	5.6e-33	67.02	chaperone protein dnaJ-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34687:SF4	BNAC09G17400D PROTEIN	coord: 1..94
None	No IPR available	PANTHER	PTHR34687	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005056.1	HG10005056.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane