HG10004417 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004417
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	3'-5' exoribonuclease 1-like
Location	Chr08: 16869985 .. 16873003 (+)
RNA-Seq Expression	HG10004417
Synteny	HG10004417

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGAACTGTGAGGCCTCTATAAAATGCCTCCAGAATAATGGAATGCCATTCAGTTTGCAACATAGTGGAAATTCTGCTGATGGTTTCCAAGAACTTACAGATGAAATCAGTTGTCATGGCAACAATGATATTCCTGAAACAAACCACCCATTGGCCAACAATTTCATTGAACGTCCAAATGAATTTCACAATAAACCTGCTTATCAGCATAATTCTGGATCATGGCCAGCCTTCCATTTTGACTCTCAAAAGGTGCAGCAGTGCCAGATGAATGCTTCTGATTGTCAATTCTACTCTTTGCCAGTGGAGAACCGCTTCCAATATGTTCCTTTCAAAATGTTTGAACAGAATTACCATTGTGATCTTCGGTTGCAAGAGTTTCAATATTTTGTGGTTATAGATTTTGAAGCAACGTGTGATAAAGATAGAAATCCCCATCCACAGGAGATAATTGAGTTCCCATCTGTCATTGTAAGTAGTGTGACTGGCCAACTGGAAGCTTGCTTTCAGACATATGTGCGCCCAACTTGCAATCAACACTTGAGTGATTTCTGCAGGGATCTAACTGGAATTCAGCAAATTCAGGTTTGTTCAAAGATTAGCTTGCTGTTTCTTCGAATTAAATAATTACGCTTGGAGGCTGCATCTTGTTGGCGTGGAACAAACATGGTGGTGTTATTGGGGTCTTACTCAACCATGTGGGCTACAGGGGTCTTCATGGGTTGGTTCAATTATAATATAAAGTTGAATTGAAATCTTTCTGAATCCTTGTGAGGCTAAAAATCGAGTTGACTGAGTTGCCAACTAATAGTTTGGTTGGTTCAGTTTAGCAGTAGCAGTTTGAGGGTTTATTGTGTGGGCGAAAAGCAGTAAAATGATGATGAGCAAGTAAAAAACACACCCTAGTAGCCCTAAGTATATTAACAAACGTAGTAGTTCCAAGTATAATAAGTATTTTTTTACACCAATATTTTAGGGGGAAAGCACGTTCACTTGAACACCTATAGTTATAAAAAATTTCTTATATATCGTTGACATGTCCAGATCTTCCCAGATGTTTGACATAACGGGTTGTTTGAAGCTAATGTTAAAATTTTTAGAAGAAAACAGAAACAACATTTTGATGTTTCAGGAGGCCGTTTGGTTCAAATTTACTCCATTTTAAAATTATAATATGGAATCACGAATGGAAAGCTATTTTTAGGGGCTAACGTCGATTCCTCCATAATGTTTGACTTATTGTAGCGGTGTGGGACTTTTGGGAGGATTATTGGATTGACAATGCCTCTTTTAGTGTTGTTTTCTCTTCCTTTTTTAGTTTAGTCCTTGCATCCCAGCTTTGGAAGTTCAGTAATCAGTATTCCGAAGAATGTTAGGTTTTACTTTTGGCTTGTTTCCTTTGGGGGGGATAACGTCATTGATTTCATCTAGAGATCTTCCTCCTTGGAGCTTGGTCTGCATTGGCGTGTGCTTTGAAAATAGGCGTCAGAAGATATTGATTCCCTTGCATGCACTTTGCTTTTCCCTTGATATTGGAATGGGAAGACTTTATTTCCCTTTCTTCCATATTGATTGCTATGTTTTCTCATAAATATTTTCTTGGATGGAACATTTAAGGGAAATATCTGGTTTCATGAAACTGGACCTTTGTTTATCTGGTTTAGGACACGTTCTGATTTTTATCTTATCTCATTGCTGTCTATAGGTGGACAGAGGTGTTACACTCAATGAAGCTCTCCTCAGGCATGATAAATGGCTTGAAAAGAAGGGGATTAAGAATACAAATTTTGCAGTGGTAACATGGTCAAACTGGGATTGCCGGGTCATGTTAGAGTCAGAATGCCGTTTCAAGAAGATTCGGAAGCCTCCATATTTCAACAGGTAAATGATCCTTATAGAAATTCTTTCGACATATGGTACAAATAATAACTAAAATTATATCACACCTTTGCAATCACGAATTGGGAAGTGCACTAGAAGGACAAAATCCAGGGAATAAAATCATTTTAATGCTATTGGTTGTGCTGTGGTAATATAGTCAAGGTAGGAGTGTCCACACATTGGGAGCTTAAAATCTTGGAGAAAAATGAACCAATCAGTTAATAAATTGATACCTTCATCCCCTAGCAATTTGCTAAGTCTAATTCTGACAACTATAGGTGACGATGCAAATTTCCTCCTCTAATTTGTCCTCGATGCCAAATTGCCAATCAAGTGTTTGTTGTTTTTAATTATCTAATATAGTTTATAACTTTAGCGGGAAAATGTTCCTACATTTAGAGGGAAAGCATAATCTTCGACTTTTAGCCATTTAACAGACTGGCATAGTGTATCTTCCTGTAGAGCAGTATTCCCTTTGTTCGTTGACAGGTAGTTCCATAGTCTTCGAGTAAAAGACTATCACAATAAGAAATAATGATGTTTGCATTCTGATATATTCCGCGAAGGAAGCATATATATGTTATTACCACCATTTGTTGGCGTCTTTACAAAATAATTATATTTTTATTTTGTGCTGCAATGTAGCTCTTACTTCTCTCTTCTGATTCGAATTGACAGATGGATCAACTTAAAAATTCCATTTCGTGAGGTTTTCGGGGGAGCACGATGCAATCTAAAGGAAGCTGTTGAGATGGCAGGCTTAGCTTGGCAAGGTCGTGCTCATTGTGGTCTTGATGATGCCAAGAACACTGCTCGTTTACTTGCCCTTCTTATGCATAGAGGCTTCAGACTATCCATCACCAATTCATTGATGTGGCAGACTACTGACTGTCCATTGCAATGGAAACAATCCCCAGAAGCCGCGACGCTCCCTCTGCAACCGCCGATGAAACCAAAGCCTGTGCACATTCCCCTTGTCCAATACTTCCCATACTGTTTCTGTGGGGTTAGAAGCAGCAGAGGTATGGTTCGCAAGCCAGGACCAAAGCAAGGGAGTTTCTTCTTTGGCTGTGGGAACTGGACTGCTACTAAGGGGGCCCGGTGCCATTACTTCGAGTGGGCCTCTCCCTGA

mRNA sequence

ATGAAGAGGAACTGTGAGGCCTCTATAAAATGCCTCCAGAATAATGGAATGCCATTCAGTTTGCAACATAGTGGAAATTCTGCTGATGGTTTCCAAGAACTTACAGATGAAATCAGTTGTCATGGCAACAATGATATTCCTGAAACAAACCACCCATTGGCCAACAATTTCATTGAACGTCCAAATGAATTTCACAATAAACCTGCTTATCAGCATAATTCTGGATCATGGCCAGCCTTCCATTTTGACTCTCAAAAGGTGCAGCAGTGCCAGATGAATGCTTCTGATTGTCAATTCTACTCTTTGCCAGTGGAGAACCGCTTCCAATATGTTCCTTTCAAAATGTTTGAACAGAATTACCATTGTGATCTTCGGTTGCAAGAGTTTCAATATTTTGTGGTTATAGATTTTGAAGCAACGTGTGATAAAGATAGAAATCCCCATCCACAGGAGATAATTGAGTTCCCATCTGTCATTGTAAGTAGTGTGACTGGCCAACTGGAAGCTTGCTTTCAGACATATGTGCGCCCAACTTGCAATCAACACTTGAGTGATTTCTGCAGGGATCTAACTGGAATTCAGCAAATTCAGGTGGACAGAGGTGTTACACTCAATGAAGCTCTCCTCAGGCATGATAAATGGCTTGAAAAGAAGGGGATTAAGAATACAAATTTTGCAGTGGTAACATGGTCAAACTGGGATTGCCGGGTCATGTTAGAGTCAGAATGCCGTTTCAAGAAGATTCGGAAGCCTCCATATTTCAACAGATGGATCAACTTAAAAATTCCATTTCGTGAGGTTTTCGGGGGAGCACGATGCAATCTAAAGGAAGCTGTTGAGATGGCAGGCTTAGCTTGGCAAGGTCGTGCTCATTGTGGTCTTGATGATGCCAAGAACACTGCTCGTTTACTTGCCCTTCTTATGCATAGAGGCTTCAGACTATCCATCACCAATTCATTGATGTGGCAGACTACTGACTGTCCATTGCAATGGAAACAATCCCCAGAAGCCGCGACGCTCCCTCTGCAACCGCCGATGAAACCAAAGCCTGTGCACATTCCCCTTGTCCAATACTTCCCATACTGTTTCTGTGGGGTTAGAAGCAGCAGAGGTATGGTTCGCAAGCCAGGACCAAAGCAAGGGAGTTTCTTCTTTGGCTGTGGGAACTGGACTGCTACTAAGGGGGCCCGGTGCCATTACTTCGAGTGGGCCTCTCCCTGA

Coding sequence (CDS)

ATGAAGAGGAACTGTGAGGCCTCTATAAAATGCCTCCAGAATAATGGAATGCCATTCAGTTTGCAACATAGTGGAAATTCTGCTGATGGTTTCCAAGAACTTACAGATGAAATCAGTTGTCATGGCAACAATGATATTCCTGAAACAAACCACCCATTGGCCAACAATTTCATTGAACGTCCAAATGAATTTCACAATAAACCTGCTTATCAGCATAATTCTGGATCATGGCCAGCCTTCCATTTTGACTCTCAAAAGGTGCAGCAGTGCCAGATGAATGCTTCTGATTGTCAATTCTACTCTTTGCCAGTGGAGAACCGCTTCCAATATGTTCCTTTCAAAATGTTTGAACAGAATTACCATTGTGATCTTCGGTTGCAAGAGTTTCAATATTTTGTGGTTATAGATTTTGAAGCAACGTGTGATAAAGATAGAAATCCCCATCCACAGGAGATAATTGAGTTCCCATCTGTCATTGTAAGTAGTGTGACTGGCCAACTGGAAGCTTGCTTTCAGACATATGTGCGCCCAACTTGCAATCAACACTTGAGTGATTTCTGCAGGGATCTAACTGGAATTCAGCAAATTCAGGTGGACAGAGGTGTTACACTCAATGAAGCTCTCCTCAGGCATGATAAATGGCTTGAAAAGAAGGGGATTAAGAATACAAATTTTGCAGTGGTAACATGGTCAAACTGGGATTGCCGGGTCATGTTAGAGTCAGAATGCCGTTTCAAGAAGATTCGGAAGCCTCCATATTTCAACAGATGGATCAACTTAAAAATTCCATTTCGTGAGGTTTTCGGGGGAGCACGATGCAATCTAAAGGAAGCTGTTGAGATGGCAGGCTTAGCTTGGCAAGGTCGTGCTCATTGTGGTCTTGATGATGCCAAGAACACTGCTCGTTTACTTGCCCTTCTTATGCATAGAGGCTTCAGACTATCCATCACCAATTCATTGATGTGGCAGACTACTGACTGTCCATTGCAATGGAAACAATCCCCAGAAGCCGCGACGCTCCCTCTGCAACCGCCGATGAAACCAAAGCCTGTGCACATTCCCCTTGTCCAATACTTCCCATACTGTTTCTGTGGGGTTAGAAGCAGCAGAGGTATGGTTCGCAAGCCAGGACCAAAGCAAGGGAGTTTCTTCTTTGGCTGTGGGAACTGGACTGCTACTAAGGGGGCCCGGTGCCATTACTTCGAGTGGGCCTCTCCCTGA

Protein sequence

MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNYHCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFPYCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP

Homology

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BLAST of HG10004417 vs. NCBI nr
Match: XP_038885029.1 (3'-5' exonuclease eri1-like [Benincasa hispida])

HSP 1 Score: 839.3 bits (2167), Expect = 1.4e-239
Identity = 383/406 (94.33%), Postives = 394/406 (97.04%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISC  NNDIPETNHPL NNFIER
Sbjct: 10  MQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCRANNDIPETNHPLLNNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMN SDCQ YSLPVENR QYVPFKMFEQNY
Sbjct: 70  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNTSDCQLYSLPVENRVQYVPFKMFEQNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
           HC++RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN
Sbjct: 130 HCEVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGARCNLKEAVEMAGL+W+GRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLSWEGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLALLMHRGFR SITNSLMWQTTDCPLQWKQ PE  TLPLQPPMKPKP+ +P++QYFP
Sbjct: 310 ARLLALLMHRGFRFSITNSLMWQTTDCPLQWKQFPETVTLPLQPPMKPKPLQVPIIQYFP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARC YFEWASP
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCQYFEWASP 415

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BLAST of HG10004417 vs. NCBI nr
Match: XP_022997162.1 (3'-5' exoribonuclease 1-like [Cucurbita maxima])

HSP 1 Score: 835.9 bits (2158), Expect = 1.5e-238
Identity = 384/406 (94.58%), Postives = 396/406 (97.54%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNG+PFSLQHSGNSADGFQELTDEISCHG+NDIPETNH LANNFIER
Sbjct: 10  MQRNCEASIKCLQNNGIPFSLQHSGNSADGFQELTDEISCHGSNDIPETNHLLANNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNSGSW AFHFDSQKVQQCQM+AS+CQFYSLPVENRFQY PFKMFEQNY
Sbjct: 70  PNEFHNKPAYQHNSGSWQAFHFDSQKVQQCQMSASECQFYSLPVENRFQYFPFKMFEQNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
           HCD RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN
Sbjct: 130 HCDRRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           Q LSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGA+CNLKEAVEMAGLAWQGRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKLPFREVFGGAQCNLKEAVEMAGLAWQGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLALLMHRGFR SITNSLMWQT+DCP QWKQSPEA TLP QPPMKPKPVH+P++QY+P
Sbjct: 310 ARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQSPEAMTLPPQPPMKPKPVHVPIIQYYP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGS FFGCGNWTATKGARCHYFEWASP
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSCFFGCGNWTATKGARCHYFEWASP 415

[Close]

BLAST of HG10004417 vs. NCBI nr
Match: XP_008445374.1 (PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis melo] >XP_008445375.1 PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis melo])

HSP 1 Score: 832.4 bits (2149), Expect = 1.7e-237
Identity = 381/406 (93.84%), Postives = 393/406 (96.80%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCH NNDIPETNHPL NNFIER
Sbjct: 10  MQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNHPLVNNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNS SWPAFHF+SQKVQQCQM+ASDCQFYSLPVENRFQY PFKMFE NY
Sbjct: 70  PNEFHNKPAYQHNSSSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYFPFKMFEHNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
            CD+RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIV+SVTG LEACFQTYVRPTCN
Sbjct: 130 -CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGARCNLKEAVEMAGL W+GRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLAL+MH+GFR SITNSLMWQTTDCPLQWKQSPE  T P QPPMKPKP+HIP+VQYFP
Sbjct: 310 ARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPETVTFPPQPPMKPKPMHIPIVQYFP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 414

[Close]

BLAST of HG10004417 vs. NCBI nr
Match: KAA0064806.1 (3'-5' exoribonuclease 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 832.4 bits (2149), Expect = 1.7e-237
Identity = 381/406 (93.84%), Postives = 393/406 (96.80%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCH NNDIPETNHPL NNFIER
Sbjct: 69  MQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNHPLVNNFIER 128

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNS SWPAFHF+SQKVQQCQM+ASDCQFYSLPVENRFQY PFKMFE NY
Sbjct: 129 PNEFHNKPAYQHNSSSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYFPFKMFEHNY 188

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
            CD+RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIV+SVTG LEACFQTYVRPTCN
Sbjct: 189 -CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACFQTYVRPTCN 248

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKNTNFAVVTWSNWDCRVMLE
Sbjct: 249 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLE 308

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGARCNLKEAVEMAGL W+GRAHCGLDDAKNT
Sbjct: 309 SECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAHCGLDDAKNT 368

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLAL+MH+GFR SITNSLMWQTTDCPLQWKQSPE  T P QPPMKPKP+HIP+VQYFP
Sbjct: 369 ARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPETVTFPPQPPMKPKPMHIPIVQYFP 428

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP
Sbjct: 429 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 473

[Close]

BLAST of HG10004417 vs. NCBI nr
Match: XP_004146778.1 (3'-5' exoribonuclease 1 [Cucumis sativus] >KGN47753.1 hypothetical protein Csa_002740 [Cucumis sativus])

HSP 1 Score: 830.1 bits (2143), Expect = 8.3e-237
Identity = 380/406 (93.60%), Postives = 393/406 (96.80%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCH NNDIPETNHPL NNFIER
Sbjct: 10  MQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNHPLVNNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNS SWPAFHF+SQKVQQCQM+ASDCQFYSLPVENRFQY PFKMFE NY
Sbjct: 70  PNEFHNKPAYQHNSRSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYFPFKMFEPNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
            CD+RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIV+SVTG LEACFQTYVRPTCN
Sbjct: 130 -CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGARCNLKEAVEMAGL W+GRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLAL+MH+GFR SITNSLMWQTTDCPLQWKQSPE  T P QPPMKPKP+HIP+VQYFP
Sbjct: 310 ARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPETVTFPPQPPMKPKPMHIPIVQYFP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWA+P
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWATP 414

[Close]

BLAST of HG10004417 vs. ExPASy Swiss-Prot
Match: A8K979 (ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=2 SV=2)

HSP 1 Score: 164.5 bits (415), Expect = 2.6e-39
Identity = 88/211 (41.71%), Postives = 127/211 (60.19%), Query Frame = 0


Query: 127 QEFQYFVVIDFEATCDKD-RNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSD 186
           Q F Y +VIDFE+TC  D ++ H QEIIEFP+V++++ TGQ+++ FQ YV+P  +  LS+
Sbjct: 32  QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91

Query: 187 FCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK-KGIKNTNFAV---------------VT 246
           FC +LTGI+Q QVD GV L   L +  KW+ K +  KN  FA                VT
Sbjct: 92  FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151

Query: 247 WSNWDCRVMLESECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGR 306
           WS+WD  V LE EC+ K++ KP + N WI+L+  ++  +      L  A++  G+ + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211

Query: 307 AHCGLDDAKNTARLLALLMHRGFRLSITNSL 321
            H GLDD++NTA L   ++  G  + IT SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242

[Close]

BLAST of HG10004417 vs. ExPASy Swiss-Prot
Match: Q5HZL1 (ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.4e-39
Identity = 86/210 (40.95%), Postives = 126/210 (60.00%), Query Frame = 0


Query: 127 QEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSDF 186
           Q F+Y ++IDFE+TC KD     QEIIEFP+V+++   G++E+ F TYV+P  +  LSDF
Sbjct: 33  QFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDF 92

Query: 187 CRDLTGIQQIQVDRGVTLNEALLRHDKWLEK----KGI------------KNTNFAVVTW 246
           C +LTGI Q QVD GV L   L + + W++K    KGI            ++   A VTW
Sbjct: 93  CTELTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTW 152

Query: 247 SNWDCRVMLESECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRA 306
           S+WD  V L  ECR K+++KP   N WI+L+  ++  +      L  A++  G+ + GR 
Sbjct: 153 SDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGRE 212

Query: 307 HCGLDDAKNTARLLALLMHRGFRLSITNSL 321
           H GLDD++NTA+L + ++  G  + IT SL
Sbjct: 213 HSGLDDSRNTAKLASRMICDGCVMKITKSL 242

[Close]

BLAST of HG10004417 vs. ExPASy Swiss-Prot
Match: Q5BKS4 (ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.7e-38
Identity = 85/211 (40.28%), Postives = 124/211 (58.77%), Query Frame = 0


Query: 127 QEFQYFVVIDFEATCDKDRNPHPQ-EIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSD 186
           Q + Y +V+DFE+TC  D   H   EIIEFP+V++++ TG++E+ F  YV+P  +  LS+
Sbjct: 32  QLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSE 91

Query: 187 FCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNT-NFAV---------------VT 246
           FC +LTGI+Q+QVD GV L   L +  KW+ K   + T +FA                VT
Sbjct: 92  FCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVT 151

Query: 247 WSNWDCRVMLESECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGR 306
           WS+WD  V LE ECR K++ KP + N WI+L+  +R  +      L  A++  G+ + GR
Sbjct: 152 WSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGR 211

Query: 307 AHCGLDDAKNTARLLALLMHRGFRLSITNSL 321
            H GLDD++NTA L   ++  G  + IT SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242

[Close]

BLAST of HG10004417 vs. ExPASy Swiss-Prot
Match: A6QLH5 (ERI1 exoribonuclease 3 OS=Bos taurus OX=9913 GN=ERI3 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-34
Identity = 76/189 (40.21%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 127 QEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSDF 186
           Q + YF+V+DFEATCDK +  HPQEIIEFP + ++  T ++E+ F  YV+P  +  L+ F
Sbjct: 141 QRYHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPF 200

Query: 187 CRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGI--KNTNFAVVTWSNWDCRVMLESECR 246
           C +LTGI Q  VD   +L + L R D+W+ K+G+   N     VT  +WD +VML  +C+
Sbjct: 201 CTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQ 260

Query: 247 FKKIRKPPYFNRWINLKIPFREVFG-GARCNLKEAVEMAGLAWQGRAHCGLDDAKNTARL 306
           +  +    YF +WINLK  +    G   +  L +  +   L   GR H G+DD KN A +
Sbjct: 261 YLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANI 320

Query: 307 LALLMHRGF 313
           +  L +RGF
Sbjct: 321 MKTLAYRGF 328

[Close]

BLAST of HG10004417 vs. ExPASy Swiss-Prot
Match: O43414 (ERI1 exoribonuclease 3 OS=Homo sapiens OX=9606 GN=ERI3 PE=1 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-34
Identity = 76/189 (40.21%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 127 QEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSDF 186
           Q + YF+V+DFEATCDK +  HPQEIIEFP + ++  T ++E+ F  YV+P  +  L+ F
Sbjct: 141 QRYHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPF 200

Query: 187 CRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGI--KNTNFAVVTWSNWDCRVMLESECR 246
           C +LTGI Q  VD   +L + L R D+W+ K+G+   N     VT  +WD +VML  +C+
Sbjct: 201 CTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQ 260

Query: 247 FKKIRKPPYFNRWINLKIPFREVFG-GARCNLKEAVEMAGLAWQGRAHCGLDDAKNTARL 306
           +  +    YF +WINLK  +    G   +  L +  +   L   GR H G+DD KN A +
Sbjct: 261 YLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANI 320

Query: 307 LALLMHRGF 313
           +  L +RGF
Sbjct: 321 MKTLAYRGF 328

[Close]

BLAST of HG10004417 vs. ExPASy TrEMBL
Match: A0A6J1K486 (3'-5' exoribonuclease 1-like OS=Cucurbita maxima OX=3661 GN=LOC111492144 PE=4 SV=1)

HSP 1 Score: 835.9 bits (2158), Expect = 7.3e-239
Identity = 384/406 (94.58%), Postives = 396/406 (97.54%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNG+PFSLQHSGNSADGFQELTDEISCHG+NDIPETNH LANNFIER
Sbjct: 10  MQRNCEASIKCLQNNGIPFSLQHSGNSADGFQELTDEISCHGSNDIPETNHLLANNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNSGSW AFHFDSQKVQQCQM+AS+CQFYSLPVENRFQY PFKMFEQNY
Sbjct: 70  PNEFHNKPAYQHNSGSWQAFHFDSQKVQQCQMSASECQFYSLPVENRFQYFPFKMFEQNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
           HCD RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN
Sbjct: 130 HCDRRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           Q LSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGA+CNLKEAVEMAGLAWQGRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKLPFREVFGGAQCNLKEAVEMAGLAWQGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLALLMHRGFR SITNSLMWQT+DCP QWKQSPEA TLP QPPMKPKPVH+P++QY+P
Sbjct: 310 ARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQSPEAMTLPPQPPMKPKPVHVPIIQYYP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGS FFGCGNWTATKGARCHYFEWASP
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSCFFGCGNWTATKGARCHYFEWASP 415

[Close]

BLAST of HG10004417 vs. ExPASy TrEMBL
Match: A0A1S3BCJ6 (3'-5' exoribonuclease 1-like OS=Cucumis melo OX=3656 GN=LOC103488427 PE=4 SV=1)

HSP 1 Score: 832.4 bits (2149), Expect = 8.1e-238
Identity = 381/406 (93.84%), Postives = 393/406 (96.80%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCH NNDIPETNHPL NNFIER
Sbjct: 10  MQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNHPLVNNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNS SWPAFHF+SQKVQQCQM+ASDCQFYSLPVENRFQY PFKMFE NY
Sbjct: 70  PNEFHNKPAYQHNSSSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYFPFKMFEHNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
            CD+RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIV+SVTG LEACFQTYVRPTCN
Sbjct: 130 -CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGARCNLKEAVEMAGL W+GRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLAL+MH+GFR SITNSLMWQTTDCPLQWKQSPE  T P QPPMKPKP+HIP+VQYFP
Sbjct: 310 ARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPETVTFPPQPPMKPKPMHIPIVQYFP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 414

[Close]

BLAST of HG10004417 vs. ExPASy TrEMBL
Match: A0A5A7VEQ6 (3'-5' exoribonuclease 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001140 PE=4 SV=1)

HSP 1 Score: 832.4 bits (2149), Expect = 8.1e-238
Identity = 381/406 (93.84%), Postives = 393/406 (96.80%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCH NNDIPETNHPL NNFIER
Sbjct: 69  MQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNHPLVNNFIER 128

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNS SWPAFHF+SQKVQQCQM+ASDCQFYSLPVENRFQY PFKMFE NY
Sbjct: 129 PNEFHNKPAYQHNSSSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYFPFKMFEHNY 188

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
            CD+RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIV+SVTG LEACFQTYVRPTCN
Sbjct: 189 -CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACFQTYVRPTCN 248

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKNTNFAVVTWSNWDCRVMLE
Sbjct: 249 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLE 308

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGARCNLKEAVEMAGL W+GRAHCGLDDAKNT
Sbjct: 309 SECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAHCGLDDAKNT 368

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLAL+MH+GFR SITNSLMWQTTDCPLQWKQSPE  T P QPPMKPKP+HIP+VQYFP
Sbjct: 369 ARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPETVTFPPQPPMKPKPMHIPIVQYFP 428

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP
Sbjct: 429 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 473

[Close]

BLAST of HG10004417 vs. ExPASy TrEMBL
Match: A0A0A0KDW9 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G399780 PE=4 SV=1)

HSP 1 Score: 830.1 bits (2143), Expect = 4.0e-237
Identity = 380/406 (93.60%), Postives = 393/406 (96.80%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCH NNDIPETNHPL NNFIER
Sbjct: 10  MQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNHPLVNNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNS SWPAFHF+SQKVQQCQM+ASDCQFYSLPVENRFQY PFKMFE NY
Sbjct: 70  PNEFHNKPAYQHNSRSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYFPFKMFEPNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
            CD+RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIV+SVTG LEACFQTYVRPTCN
Sbjct: 130 -CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGARCNLKEAVEMAGL W+GRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLAL+MH+GFR SITNSLMWQTTDCPLQWKQSPE  T P QPPMKPKP+HIP+VQYFP
Sbjct: 310 ARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPETVTFPPQPPMKPKPMHIPIVQYFP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWA+P
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWATP 414

[Close]

BLAST of HG10004417 vs. ExPASy TrEMBL
Match: A0A6J1HFU9 (uncharacterized protein LOC111462643 OS=Cucurbita moschata OX=3662 GN=LOC111462643 PE=4 SV=1)

HSP 1 Score: 827.4 bits (2136), Expect = 2.6e-236
Identity = 381/406 (93.84%), Postives = 393/406 (96.80%), Query Frame = 0


Query: 1   MKRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHGNNDIPETNHPLANNFIER 60
           M+RNCEASIKCLQNNG+PFSLQHSGNSADGFQELTDEISCHG+NDIPETNH LANNFIER
Sbjct: 10  MQRNCEASIKCLQNNGIPFSLQHSGNSADGFQELTDEISCHGSNDIPETNHLLANNFIER 69

Query: 61  PNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMNASDCQFYSLPVENRFQYVPFKMFEQNY 120
           PNEFHNKPAYQHNSGSW A HFDSQKVQQCQM+AS+CQFYSLPVENRFQY PFKMFEQNY
Sbjct: 70  PNEFHNKPAYQHNSGSWQAVHFDSQKVQQCQMSASECQFYSLPVENRFQYFPFKMFEQNY 129

Query: 121 HCDLRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 180
           HCD RLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN
Sbjct: 130 HCDRRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCN 189

Query: 181 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 240
           Q LSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE
Sbjct: 190 QLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLE 249

Query: 241 SECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCGLDDAKNT 300
           SECRFKKIRKPPYFNRWINLK+PFREVFGGA+CNLKEAVEMAGLAWQGRAHCGLDDAKNT
Sbjct: 250 SECRFKKIRKPPYFNRWINLKLPFREVFGGAQCNLKEAVEMAGLAWQGRAHCGLDDAKNT 309

Query: 301 ARLLALLMHRGFRLSITNSLMWQTTDCPLQWKQSPEAATLPLQPPMKPKPVHIPLVQYFP 360
           ARLLALLMHRGFR SITNSLMWQT+DCP QWKQSP A TL  QPPMKPKPVH+P++QY+P
Sbjct: 310 ARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQSPGAMTLTPQPPMKPKPVHVPIIQYYP 369

Query: 361 YCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 407
           YCFCGVRSSRGMVRKPGPKQGS FFGCGNWTATKGARCHYFEWASP
Sbjct: 370 YCFCGVRSSRGMVRKPGPKQGSCFFGCGNWTATKGARCHYFEWASP 415

[Close]

BLAST of HG10004417 vs. TAIR 10
Match: AT3G15140.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-21
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 0


Query: 127 QEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPT------CN 186
           QEF +F+VID E            EI+EFP +IV + T ++   F  +VRPT       N
Sbjct: 124 QEFNFFLVIDLEGKV---------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAIN 183

Query: 187 QHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGI--KNTNF-----AVVTWSNW 246
           +++     +L G+ ++  D  +   + +   + WL +  +  K+T++     A VT  NW
Sbjct: 184 KYIEGKYGEL-GVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNW 243

Query: 247 DCRVMLESECRFKKIRKPPYFNRWINLKIPFREVFGGARCNLKEAVEMAGLAWQGRAHCG 306
           D +  +  +C    I  PPYF  WINLK  +   +G     +   +   G+   G  H G
Sbjct: 244 DIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLG 303

Query: 307 LDDAKNTARLLALLMHRGFRLSIT 318
           +DD KN  R++  ++  G  L +T
Sbjct: 304 IDDTKNITRVVQRMLSEGAVLKLT 317

The following BLAST results are available for this feature:

BLAST of HG10004417 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885029.1	1.4e-239	94.33	3'-5' exonuclease eri1-like [Benincasa hispida]	[more]
XP_022997162.1	1.5e-238	94.58	3'-5' exoribonuclease 1-like [Cucurbita maxima]	[more]
XP_008445374.1	1.7e-237	93.84	PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis melo] >XP_008445375.1 PREDICTED...	[more]
KAA0064806.1	1.7e-237	93.84	3'-5' exoribonuclease 1-like [Cucumis melo var. makuwa]	[more]
XP_004146778.1	8.3e-237	93.60	3'-5' exoribonuclease 1 [Cucumis sativus] >KGN47753.1 hypothetical protein Csa_0...	[more]

BLAST of HG10004417 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8K979	2.6e-39	41.71	ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=2 SV=2	[more]
Q5HZL1	4.4e-39	40.95	ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1	[more]
Q5BKS4	3.7e-38	40.28	ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1	[more]
A6QLH5	1.9e-34	40.21	ERI1 exoribonuclease 3 OS=Bos taurus OX=9913 GN=ERI3 PE=2 SV=1	[more]
O43414	1.9e-34	40.21	ERI1 exoribonuclease 3 OS=Homo sapiens OX=9606 GN=ERI3 PE=1 SV=2	[more]

BLAST of HG10004417 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K486	7.3e-239	94.58	3'-5' exoribonuclease 1-like OS=Cucurbita maxima OX=3661 GN=LOC111492144 PE=4 SV...	[more]
A0A1S3BCJ6	8.1e-238	93.84	3'-5' exoribonuclease 1-like OS=Cucumis melo OX=3656 GN=LOC103488427 PE=4 SV=1	[more]
A0A5A7VEQ6	8.1e-238	93.84	3'-5' exoribonuclease 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0KDW9	4.0e-237	93.60	Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G399780...	[more]
A0A6J1HFU9	2.6e-236	93.84	uncharacterized protein LOC111462643 OS=Cucurbita moschata OX=3662 GN=LOC1114626...	[more]

BLAST of HG10004417 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15140.1	1.4e-21	28.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 131..313 e-value: 2.7E-20 score: 83.4
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 133..304 e-value: 1.1E-26 score: 94.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 121..339 e-value: 4.0E-76 score: 257.4
None	No IPR available	PANTHER	PTHR23044:SF64	ERI1 EXORIBONUCLEASE 2-LIKE	coord: 1..405
None	No IPR available	PANTHER	PTHR23044	3'-5' EXONUCLEASE ERI1-RELATED	coord: 1..405
None	No IPR available	CDD	cd06133	ERI-1_3'hExo_like	coord: 132..308 e-value: 4.75732E-68 score: 211.31
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 129..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004417.1	HG10004417.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
molecular_function	GO:0000175	3'-5'-exoribonuclease activity
molecular_function	GO:0003676	nucleic acid binding