HG10004383 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004383
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription factor CAULIFLOWER
Location	Chr08: 16504785 .. 16510156 (+)
RNA-Seq Expression	HG10004383
Synteny	HG10004383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAAAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGGTCACTTTTTTTTTTAATTTTTTTTCCTCAATTTAATCATGTCTTTAATTATTTTAGGGTTTTTTTTTTTTATTTTTTGACCTAAAATCTCTTTTAAACCTCTGGTTATACGAGTGTGTGTCTCTTTGGATTTTCCTAATTTTTGTTCTTTTTTTTTTTCTTCTTCTTAAAAAAGGAAATATTAAATAAGATGGCCCCAAATTTAGCTCTACAATTCTGATTTTTCTGACTTCTCACTACCACTTAACACCCACTTCTTTTTTTTTTTCCCTTTTTTTTTATTAGGGTTTCAAAAAAAATATCTCCGATACGAATAACCGTACGTACATAACCCTATCAACTTTTGGGATCGATGGTGATTTAATTAGATCGATCGTTTCTTATTCTTCAACTCGATTCATTCATTTTCATTTTCATTTTTAGGGTTGATTTTGATCTTCTTTTTTTAGATTTTTCAAGTTCAAAACTAGGTTTTTTTTTTTTTTTTTGACTTTTGAAGTGGTTGGTGGTTGGTTGTAGAACAAAAAAGACTGAAGTGTTTTTTTTTTTTAATGGAAATGAGGATTTAATTTAATAAAATAAAGTTTCCTCTCGGTGTTTTTTATTTTATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTGCATGTATCTTGTTCATATACAGTAGTTAAGTCAGATAAAATGGTCAGAGCTAAAGAGTGAGAAATTTGGTAAATGATTTATGATCAGAAGAAAAAAAATTATTGTATCTTGTAAATCTTGGCTTTTATTTGATTTTGAAACTACTTTTTTAATGACTTGTAATAAAAATTATTCGTGTGCTTGAAGTATTTATGTTTTGGACGGTATGCTAAATTTAATTCTTCTGAAGCTAGCTAGGTTGTAATAATAAACTATGGAAAAAATAAGTACAAAAATGAAGTTATAAATTTAAAATACAGAACGGGGATTCATATATGTATATATAATTCGTAAAAAAATTATTTCATATCGAAACTATTTTCTTTTATATAAAATATTATAAATTTTGTGTTGGGTTTAGGTTTTCGGTATTTTATATGATATTTGAGAGGTAACATTTTTAAAAAATAGGGAATCTAGGGCTTTCGGAACATTATTTATTTATTATTATTATTATTGAGCAAGGATGTTTCAAAGCAATAAATTTAGGAAATGGAAAGCAAGGTTTTTTTTTTTTTTTTTTTTTGTATTTTAAATTTAAAGTTTTCGTTTCTTTTTGTCTTGTTTTTCCAACGTGTATTGAAAAATAATAATAATAAATTGGATTAAATAATTAAATAAGGTAAAATCTCTACTTTTAAAAAAATACATTTTTTTCTGAGAGGTTGATAATGCTTTCGTTTTTTGTTTATATATATATATATATATTTTGAGTGAAAAGGTTGAGAAAATAGAATAGTCAGCAACTTAATCAGGAAACCAAAAAAAAAACCTTAATAAGCCATACACTAACCTAAATACGGTCTTTATAAAGTTACGTTTGAATTTATAGAGAAATTTCAAGAAAAAAAAGTTTTTAAAAATTATTTTTTTATTTTTAAAAATTGGTTCGGTTTTTAAAATAATGACAGGAAGTGAATAATCGAATAAAGAAATAAAAATAGAAATGTTATCCACACCATATATCATATATGGTGCTTCTAAAAAACATAAAATCAAAAAATAATTTATAATATAAGAAATAGAAATGTTACCAAACAATATATAAGCATTCTTCCATTTACAAAATGTGTTTTTGTGTGTGTGTTTCATGCGATCAACCATAAGCTATTAATTTTATGCATTTATACTTAAATTAGTTTATTTAAATGGATAAAATGTCATATATATGAGCATAGTCTAATTTGTTAATACATTTATTTTTCTTCTTCTTTGTATGTTTCATTTGCTCATTATAAGCTATTACTTTATATGCATTTATTTATCACATTATTGATTGATTGTTATCTCAATCTACATACATGAATTAGTTTAAATTTGATATCTTTAAATATAAATTTGGTGGGCCTTATTTATATCACATATTGATTGCATTTATTAATTTATATATCTTATTATTTTGACCTCAAATGTAGGGTTTTATTAAGAAGAATAGTACTAATGTTTAACAATGATAGACAATGGAAGAGAAAAAAGTTAAACCCTAACCCTAAATGAACTCATGAGTATTATTCATAATTCATAGTGATACACAGAAGTTGAAATTATAAATATATTCCCAGAAAAAAAGGAAAAAAGGGGTGGGGGGAAGAAATAATGGATTTGATGGGAAAATTGTTATTCTTGTCTAGGATAAGACTTGATAGAAAACAGTAACACTTGGTGTTTATATGCTTCAAATCTAGGCTCTAACTTTCAAAAGTTGATTTTGTGTTTAATATTCCAAATTAAATTCATTTAATTTGATATATTATATATATGTATAATATTTGGCTGTCAAGTCAACTTAAATCACTTGAAACTTCAAATAGTGGTTGGTTGATGTACTATATTAATGGTTGCTTCTTGTGTGAGAGATACTCAGAGATGGAATTGATAGAGCTGAGAGACAGAATTAATTGTGTTGATACTGTTCAAAATGGAAAGAATTTTTTTAAAGCTTTTTTGAAAAGTGATTTTTTTTTTTTTTGTTAAGTTGAATAAGAATAGTTTTATTATTTTTTGCTAGTGAAAATTAAACCCTATTCTTTTTCTTTTTCTAATTCCAAAATGTTATTGAGATATTGTTTATAATATATTTGATAACTATTTGATTTTTTTTATAAGTGTATTTGTTTCTCTAGATTTCTTTATCCCGTCTTTTCGAAATGGGACATTAAAAAAAAAAATCAAACTTTCTATAACAATTAGATAAAAAACACACACACATGCATATAGGTGGGAGTCGTGTTTAAACATGCACGTGTTTGATAACTAGATTTTAGTTTATAGTTTTTGAAATTTTAGCTTATAAGCACTACTTTTATTTATAAGTTTATTTGTTTTGTTATCTACTTTCTATTAATGCTTCAAAAATCAAGTCAAGTTTTATAAATTAAAAAAAATGTAGGTTTTTCTTTTTTTTTAAAAAAACTAAATGGTTTGTAAAACTACCCCATCAAATCTTAAAATTTAGCAAAATTTTGAAATATGTTCACTTGACTTATGGTAGGTTTAGATTGACTTTCTAAGTATTTAAGTAAGTATTTTTAAATGAAAAAAATGTTTATAAACACTTAGAAATTCAATCCAAATGAACCCGATTGACGTTTTCAATTTGAAAAGTTTTATTTATTTATTATGAATTCAACAAATGTGAGCTGGAGAATTTGAGTACATGTGACTTATAGGGCATATATTTGTTCTCTATGAAAATTTTATTTGCATTTTATCTACATACCATTCAGCTTATAAGATTCAAATTATCATACAAAAGTTGAAATACAAATAAATTAAAGTTTCTGTTTATAGGTTTTATGACTCCTCATCTCCTTAGCCTCAAATTTAAACTGATATTTCACTAATTTTAACATTATTTTAAGAGTCGAACGAGGTCTTAATAATACAATTAAATTAAATCACCTGTAGGATGAAGGAAAACTAATCAGCATATAAAACTTCTCATAATGAAGATTATATATATTAATTACATTATAATGAACTTTAATATAATTATGGTGCAGTATGGAGAAAATACTTGAACGATATGAGAGATATTCTTACGTGGGGAGGCAGCAAATTGCAGCTTCTGAATCTGAATTTTCTCATGAAAATTGGACTCTGGAATACTATAGACTTAAGTCTAAATTTGAACTTCTTCAAAGAAACAACAGGTATATATGCTATATTATACAAATAAACATTTTGTTTATATATATATACATATATATATATATATATATTTTCATGCATGGACATTTCCCGACATGTCGTTGGAAATTTAATATCCTAATTTATACAATCTTGAATTTCGATATTTAGTTGATATTTTTTTTGTGATACCGATCGATATGTCGACGTAAATTTAATATTTGTTACGTAATTGCAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTCAAAGAACTGCAAAACTTAGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCCAGAAAAGTAGGGCTTTTTTTATTTGCATATATATATTATATATACACACACACATATATTAAATTTTAATGTTGTAATTATTATTAATTAATTATATATATGTGTATTGGATTATTTTTCAGAACCAACTTATGTATGATTCCATCTCGGCACTCCAAAGAAAGGCAATTCTTCTTTACTTTTCCCATTTTATAAAAATATCTTAATAATAGTTAATTTTTCTTTCTTTTATAATTTTATATATTTACTTTACATCCTAATATATATATTTTAATCTTACATAAATGACAGGAAAGAGCAATACAGGAGCAAAATGCCCTACTGGCCAAGCAGGTGAGTTTTGCTTTCTTTTTAATTTAAGCACATTTTTAAGATACATTTTCTTAACACATATATATATATAAATATATATAAAAGATAGGGTTTTAATTTAAGCAGAAGTAATAATATTGTTTTTTTTTTTTTGGAGGGTCAATTTTTGAAACGTGTATTTTAACTCAAAATTTATTTTTTAGAGTAATTTTTATTCCTTATGTGAATTTTAGGGAAGAAAAGAACACTGTAAATCATACTAAAATCAGGTAGGAAATTATTTTAAACAAATTCTTAGTCGTCTAATATGGTATCAGGAGATCTTATGTTAAACTAATGTTAGGGTGTTATATACTAATTTTTGAACCCACTGAGAAAGTGAAAAAGATTAAACATAAACATGATTTATATTAACTTAAAGTTTTGATTTTAGCAGTTTACAAACTTTTAATTATTAATAACTTAATTACATTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAGGATAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTCTTTTTCCCACCACAGCCCCATCCCTCTCTAAACCAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTCTTATTCCCACCACAGCCCCATCCCTCTCTAAACATTGGGTAA

mRNA sequence

ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAAAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTCAAAGAACTGCAAAACTTAGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCCAGAAAAGATAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTCTTTTTCCCACCACAGCCCCATCCCTCTCTAAACCAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTCTTATTCCCACCACAGCCCCATCCCTCTCTAAACATTGGGTAA

Coding sequence (CDS)

ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAAAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTCAAAGAACTGCAAAACTTAGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCCAGAAAAGATAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTCTTTTTCCCACCACAGCCCCATCCCTCTCTAAACCAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTCTTATTCCCACCACAGCCCCATCCCTCTCTAAACATTGGGTAA

Protein sequence

MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKDKEKSVAMAQQAEWEQQQHHGYNALSFFFPPQPHPSLNQQAEWEQQQHHGYNALSFLFPPQPHPSLNIG

Homology

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BLAST of HG10004383 vs. NCBI nr
Match: XP_038886329.1 (truncated transcription factor CAULIFLOWER A-like [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 5.6e-51
Identity = 129/213 (60.56%), Postives = 130/213 (61.03%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIAASESEFSHENWTLEYYRLKSKVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSR------------------------------KDKEKS 134
           SLSVKELQNLEQQIDTALKHVRSR                              K+KEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKS 180

[Close]

BLAST of HG10004383 vs. NCBI nr
Match: XP_031742602.1 (truncated transcription factor CAULIFLOWER A isoform X2 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50
Identity = 125/199 (62.81%), Postives = 128/199 (64.32%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHYMGEDLD
Sbjct: 61  SSMEKILERYERYSFVGRQQNAASESEFSYENWTLEYYRLKSKVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSR----------------KDKEKSVAMAQQAEWEQQQH 134
           SLSVKELQNLEQQIDTALKHVR+R                K+KEKSVA+AQQAEWE QQ 
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRTRKNQLMFESITDLQKKIKEKEKSVALAQQAEWEHQQQ 180

[Close]

BLAST of HG10004383 vs. NCBI nr
Match: XP_023002154.1 (truncated transcription factor CAULIFLOWER A-like [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 3.6e-50
Identity = 128/216 (59.26%), Postives = 138/216 (63.89%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSRKDK--EKSVAMAQQAEWEQQQHHGYNALSFFFPPQP 165
           SLSVKELQNLEQQIDTALKHVRSRK++    S++  Q+ E   Q+ +   A       + 
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMHDSISALQRKERAIQEQNALLAKQ-IKEKEK 180

[Close]

BLAST of HG10004383 vs. NCBI nr
Match: XP_022951531.1 (truncated transcription factor CAULIFLOWER A-like [Cucurbita moschata] >XP_023537553.1 truncated transcription factor CAULIFLOWER A-like [Cucurbita pepo subsp. pepo] >KAG6585254.1 Agamous-like MADS-box protein AP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020176.1 Floral homeotic protein APETALA 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 4.8e-50
Identity = 128/216 (59.26%), Postives = 138/216 (63.89%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSRKDK--EKSVAMAQQAEWEQQQHHGYNALSFFFPPQP 165
           SLSVKELQNLEQQIDTALKHVRSRK++    S++  Q+ E   Q+ +   A       + 
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMHDSISALQRKERAIQEQNALLAKQ-IKEKEK 180

[Close]

BLAST of HG10004383 vs. NCBI nr
Match: XP_008445435.1 (PREDICTED: truncated transcription factor CAULIFLOWER A [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 6.2e-50
Identity = 126/213 (59.15%), Postives = 130/213 (61.03%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHY+GEDLD
Sbjct: 61  SSMEKILERYERYSFVGRQQNAASESHFSHENWTLEYYRLKSKVELLQRNNSHYVGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSR------------------------------KDKEKS 134
           SLSVKELQNLEQQIDTALKHVRSR                              K+KEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMFESITDLQKKVRTIEENNAQLAKEIKEKEKS 180

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BLAST of HG10004383 vs. ExPASy Swiss-Prot
Match: Q6E6S7 (Agamous-like MADS-box protein AP1 OS=Vitis vinifera OX=29760 GN=AP1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.6e-40
Identity = 108/214 (50.47%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+ GLLKKAHEISVLCDAEVALIVFS KGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 60

Query: 61  S------------------------------------------------SHYMGEDLDSL 120
           S                                                 H++GEDLDSL
Sbjct: 61  SCMEKILDRYERYSYAERQLTATDPESQGNWSLEYSKLKAKIELLQRSQRHFLGEDLDSL 120

Query: 121 SVKELQNLEQQIDTALKHVRSRKDK--EKSVAMAQQAEWEQQQHHGYNALSFFFPPQPHP 165
           S+KELQNLEQQ+DTALKH+RSRK++   +S++  Q+ E   Q+ +   A       +   
Sbjct: 121 SLKELQNLEQQLDTALKHIRSRKNQLMYESISELQRKEKAMQEQNNMLAKEI---KEKEK 180

[Close]

BLAST of HG10004383 vs. ExPASy Swiss-Prot
Match: D7SMN6 (Agamous-like MADS-box protein FUL-L OS=Vitis vinifera OX=29760 GN=FULL PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-39
Identity = 102/214 (47.66%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKI+RQVTFSKR++GLLKKAHEISVLCDAEVALIVFS KGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSD 60

Query: 61  SS------------------------------------------------HYMGEDLDSL 120
           SS                                                H++GEDLD L
Sbjct: 61  SSMERILERYERYSLSERQLLSTDPDPQGNWSMDYPKLTARIEVLQRNLRHFVGEDLDPL 120

Query: 121 SVKELQNLEQQIDTALKHVRSRKDKEKSVAMAQQAEWEQQQHHGYNALSFFFPPQPHPSL 165
           S++ELQNLEQQ+DTALK +R+RK++    ++++  + E+      NAL+     +     
Sbjct: 121 SLRELQNLEQQLDTALKRIRTRKNQLMHESISELQKKEKSLVEQNNALAKKVKEKEKVEQ 180

[Close]

BLAST of HG10004383 vs. ExPASy Swiss-Prot
Match: Q96356 (Floral homeotic protein APETALA 1-2 OS=Brassica oleracea var. italica OX=36774 GN=2AP1 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 108/241 (44.81%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGL+KKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  S------------------------------------------------SHYMGEDLDSL 120
           S                                                 HY+GEDL ++
Sbjct: 61  SCMEKILERYERYSYAERQLIAPESDSNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAM 120

Query: 121 SVKELQNLEQQIDTALKHVRSRKD------------KEK-----------------SVAM 165
           S KELQNLEQQ+DTALKH+RSRK+            KEK                 +V  
Sbjct: 121 SPKELQNLEQQLDTALKHIRSRKNQLMYDSINELQRKEKAIQEQNSMLSKQIKERENVLR 180

[Close]

BLAST of HG10004383 vs. ExPASy Swiss-Prot
Match: B4YPW6 (Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. alboglabra OX=3714 GN=AP1A PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 108/241 (44.81%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGL+KKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  S------------------------------------------------SHYMGEDLDSL 120
           S                                                 HY+GEDL ++
Sbjct: 61  SCMEKILERYERYSYAERQLIAPESDSNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAM 120

Query: 121 SVKELQNLEQQIDTALKHVRSRKD------------KEK-----------------SVAM 165
           S KELQNLEQQ+DTALKH+RSRK+            KEK                 +V  
Sbjct: 121 SPKELQNLEQQLDTALKHIRSRKNQLMYDSINELQRKEKAIQEQNSMLSKQIKERENVLR 180

[Close]

BLAST of HG10004383 vs. ExPASy Swiss-Prot
Match: Q8GTF5 (Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. botrytis OX=3715 GN=AP1A PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 108/241 (44.81%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGL+KKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  S------------------------------------------------SHYMGEDLDSL 120
           S                                                 HY+GEDL ++
Sbjct: 61  SCMEKILERYERYSYAERQLIAPESDSNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAM 120

Query: 121 SVKELQNLEQQIDTALKHVRSRKD------------KEK-----------------SVAM 165
           S KELQNLEQQ+DTALKH+RSRK+            KEK                 +V  
Sbjct: 121 SPKELQNLEQQLDTALKHIRSRKNQLMYDSINELQRKEKAIQEQNSMLSKQIKERENVLR 180

[Close]

BLAST of HG10004383 vs. ExPASy TrEMBL
Match: A0A6J1KPM9 (truncated transcription factor CAULIFLOWER A-like OS=Cucurbita maxima OX=3661 GN=LOC111496100 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.8e-50
Identity = 128/216 (59.26%), Postives = 138/216 (63.89%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSRKDK--EKSVAMAQQAEWEQQQHHGYNALSFFFPPQP 165
           SLSVKELQNLEQQIDTALKHVRSRK++    S++  Q+ E   Q+ +   A       + 
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMHDSISALQRKERAIQEQNALLAKQ-IKEKEK 180

[Close]

BLAST of HG10004383 vs. ExPASy TrEMBL
Match: A0A6J1GHU4 (truncated transcription factor CAULIFLOWER A-like OS=Cucurbita moschata OX=3662 GN=LOC111454319 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.3e-50
Identity = 128/216 (59.26%), Postives = 138/216 (63.89%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSRKDK--EKSVAMAQQAEWEQQQHHGYNALSFFFPPQP 165
           SLSVKELQNLEQQIDTALKHVRSRK++    S++  Q+ E   Q+ +   A       + 
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMHDSISALQRKERAIQEQNALLAKQ-IKEKEK 180

[Close]

BLAST of HG10004383 vs. ExPASy TrEMBL
Match: A0A1S3BCQ3 (truncated transcription factor CAULIFLOWER A OS=Cucumis melo OX=3656 GN=LOC103488455 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.0e-50
Identity = 126/213 (59.15%), Postives = 130/213 (61.03%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHY+GEDLD
Sbjct: 61  SSMEKILERYERYSFVGRQQNAASESHFSHENWTLEYYRLKSKVELLQRNNSHYVGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSR------------------------------KDKEKS 134
           SLSVKELQNLEQQIDTALKHVRSR                              K+KEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMFESITDLQKKVRTIEENNAQLAKEIKEKEKS 180

[Close]

BLAST of HG10004383 vs. ExPASy TrEMBL
Match: A0A6J1BSN0 (truncated transcription factor CAULIFLOWER A-like OS=Momordica charantia OX=3673 GN=LOC111004981 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.8e-48
Identity = 124/215 (57.67%), Postives = 130/215 (60.47%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEY++D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYATD 60

Query: 61  S--------------------------------------------------SHYMGEDLD 120
           S                                                  SHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIALSETEFSQENWTLEYYRLKSKVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHVRSR------------------------------KDKEKS 134
           SLSVKELQNLEQQIDTALKH+RSR                              K+KEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHIRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKS 180

[Close]

BLAST of HG10004383 vs. ExPASy TrEMBL
Match: A0A6P5XE36 (truncated transcription factor CAULIFLOWER A-like OS=Durio zibethinus OX=66656 GN=LOC111282197 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.4e-41
Identity = 111/214 (51.87%), Postives = 129/214 (60.28%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGL KKAHEISVLCDAEVALIVFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLSKKAHEISVLCDAEVALIVFSHKGKLFEYSTD 60

Query: 61  S------------------------------------------------SHYMGEDLDSL 120
           S                                                 HYMGEDLDSL
Sbjct: 61  SCMEKILERYERYSYAETQLVATESDSQGNWSIEYNRLKAKVELLQKNHRHYMGEDLDSL 120

Query: 121 SVKELQNLEQQIDTALKHVRSRKDK--EKSVAMAQQAEWEQQQHHGYNALSFFFPPQPHP 165
           S+KELQNLEQQ+DTALKH++S+K++   +S++  Q+ E   Q+ +   A       +   
Sbjct: 121 SLKELQNLEQQLDTALKHIQSKKNQLMYESISELQRKEKAIQEQNTMLAKQI---QEREK 180

[Close]

BLAST of HG10004383 vs. TAIR 10
Match: AT1G69120.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 98/206 (47.57%), Postives = 120/206 (58.25%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  S------------------------------------------------SHYMGEDLDSL 120
           S                                                 HY+GEDL ++
Sbjct: 61  SCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAM 120

Query: 121 SVKELQNLEQQIDTALKHVRSRKDKEKSVAMAQQAEWEQQQHHGYNALSFFFPPQPHPSL 159
           S KELQNLEQQ+DTALKH+R+RK++    ++ +  + E+      + LS     +     
Sbjct: 121 SPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILR 180

[Close]

BLAST of HG10004383 vs. TAIR 10
Match: AT1G26310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 134.4 bits (337), Expect = 8.1e-32
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRV+LKRIENKINRQVTFSKR+ GLLKKA EISVLCDAEV+LIVFSHKGKLFEYSS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  S--------------------------------------------------SHYMGEDLD 116
           S                                                   HY+GE+L+
Sbjct: 61  SCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELE 120

[Close]

BLAST of HG10004383 vs. TAIR 10
Match: AT5G60910.1 (AGAMOUS-like 8 )

HSP 1 Score: 134.4 bits (337), Expect = 8.1e-32
Identity = 84/165 (50.91%), Postives = 102/165 (61.82%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR++GLLKKAHEISVLCDAEVALIVFS KGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query: 61  S------------------------------------------------SHYMGEDLDSL 116
           S                                                 ++MGEDLDSL
Sbjct: 61  SCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSL 120

[Close]

BLAST of HG10004383 vs. TAIR 10
Match: AT3G30260.1 (AGAMOUS-like 79 )

HSP 1 Score: 119.0 bits (297), Expect = 3.5e-27
Identity = 77/163 (47.24%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQL+RIENKI RQVTFSKR+ GL+KKA EISVLCDAEVALIVFS KGKLFEYS+ 
Sbjct: 1   MGRGRVQLRRIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIVFSPKGKLFEYSAG 60

Query: 61  SS------------------------------------------------HYMGEDLDSL 114
           SS                                                H  GE++D L
Sbjct: 61  SSMERILDRYERSAYAGQDIPTPNLDSQGECSTECSKLLRMIDVLQRSLRHLRGEEVDGL 120

[Close]

BLAST of HG10004383 vs. TAIR 10
Match: AT1G24260.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 111.3 bits (277), Expect = 7.4e-25
Identity = 80/215 (37.21%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRV+LKRIENKINRQVTF+KR+ GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SS---------------------------------------------------HYMGEDL 120
           SS                                                   + +GEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 DSLSVKELQNLEQQIDTALKHVRSRKDKEKSVAMAQQAEWEQQQHHGYNALSFFFPPQPH 165
             LS KEL++LE+Q+D++LK +R+ + +     + Q  + + +   GY       P Q  
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQ---FMLDQLNDLQSKLADGYQMPLQLNPNQEE 180

The following BLAST results are available for this feature:

BLAST of HG10004383 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886329.1	5.6e-51	60.56	truncated transcription factor CAULIFLOWER A-like [Benincasa hispida]	[more]
XP_031742602.1	2.1e-50	62.81	truncated transcription factor CAULIFLOWER A isoform X2 [Cucumis sativus]	[more]
XP_023002154.1	3.6e-50	59.26	truncated transcription factor CAULIFLOWER A-like [Cucurbita maxima]	[more]
XP_022951531.1	4.8e-50	59.26	truncated transcription factor CAULIFLOWER A-like [Cucurbita moschata] >XP_02353...	[more]
XP_008445435.1	6.2e-50	59.15	PREDICTED: truncated transcription factor CAULIFLOWER A [Cucumis melo]	[more]

BLAST of HG10004383 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6E6S7	4.6e-40	50.47	Agamous-like MADS-box protein AP1 OS=Vitis vinifera OX=29760 GN=AP1 PE=2 SV=1	[more]
D7SMN6	5.1e-39	47.66	Agamous-like MADS-box protein FUL-L OS=Vitis vinifera OX=29760 GN=FULL PE=2 SV=1	[more]
Q96356	8.2e-37	44.81	Floral homeotic protein APETALA 1-2 OS=Brassica oleracea var. italica OX=36774 G...	[more]
B4YPW6	8.2e-37	44.81	Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. alboglabra OX=3714...	[more]
Q8GTF5	8.2e-37	44.81	Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. botrytis OX=3715 G...	[more]

BLAST of HG10004383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPM9	1.8e-50	59.26	truncated transcription factor CAULIFLOWER A-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1GHU4	2.3e-50	59.26	truncated transcription factor CAULIFLOWER A-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A1S3BCQ3	3.0e-50	59.15	truncated transcription factor CAULIFLOWER A OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1BSN0	4.8e-48	57.67	truncated transcription factor CAULIFLOWER A-like OS=Momordica charantia OX=3673...	[more]
A0A6P5XE36	4.4e-41	51.87	truncated transcription factor CAULIFLOWER A-like OS=Durio zibethinus OX=66656 G...	[more]

BLAST of HG10004383 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69120.1	2.4e-36	47.57	K-box region and MADS-box transcription factor family protein	[more]
AT1G26310.1	8.1e-32	49.70	K-box region and MADS-box transcription factor family protein	[more]
AT5G60910.1	8.1e-32	50.91	AGAMOUS-like 8	[more]
AT3G30260.1	3.5e-27	47.24	AGAMOUS-like 79	[more]
AT1G24260.3	7.4e-25	37.21	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	PANTHER	PTHR11945:SF456	FLORAL HOMEOTIC PROTEIN APETALA 1	coord: 62..164 coord: 1..60
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 62..164 coord: 1..60
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 73.71 coord: 3..23 score: 70.24 coord: 38..59 score: 65.42
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.1E-40 score: 151.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 7.7E-26 score: 89.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 32.085411
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 61..113 e-value: 1.0E-13 score: 51.3
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 40..144 score: 8.99868
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..86 e-value: 9.9E-25 score: 88.2
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..76
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..63 e-value: 1.80786E-40 score: 129.209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004383.1	HG10004383.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding