HG10004379 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004379
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	peptidyl-prolyl cis-trans isomerase E
Location	Chr08: 16437857 .. 16440078 (+)
RNA-Seq Expression	HG10004379
Synteny	HG10004379

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAGGCTGTTCAGAAGAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAATCTATTCTACACGCAGCCTTCATTCCTTTCGGCGACATCAAAGACGTCAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTTGTCACTTTCTTGGAAAAGGAAGACGCATCCGCCGCCATGGATAACATGGACGGTGCTGAGCTCTACGGTCGTGTACTTACTGTCAACTATGCCCTCCCTGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCTCAGCCTAGTAAGTTCCTCCATTCCTTAAACCCTAATTCTTTTCCTCTATTCATTCCCTGCATTTCTAAAATTCCTTTTGTGTTGCATCTAATTGTCCATTGCTAAATTTGAATTTATGCAATCTATTCGGTTCCATGGTATACAATAATGGTTGGATGTTTAGGTTTGTGTATGTTCTAAATCTTTAGTTTTCATTCTTTCACTTTCAAATGTTTTGTTAGTGCAATAAAAAATTCAGACCAGCTGATTTCTAATTTGAGTTCAAATCAAATGCATGTATCGTAAAACACAAGTCCGGATGCAATACAGAAGTTTAAAAATCAAAGACTGAAATTGGGTTTTGTGCTAACATCAGAGAAGGAACCAAAGCTAATACTATCAAAACTAAAATTTGGTAAAGTTTAGGGTCAAAATTAGATTTAAACCCTTAAATCTTTTCTGATCCTTAGGACTTGATATGTACATGATATGTTCAAAAATATGTAAATGCAAACTCTGGCTGTCGTACTTATACTGCAGCAATGAGATCAAACCATATGATATTATCATTTTTTAATAACCGAACTTTCAATGGAAAAAAAATGAAAGAATTTGGACCAGGTTAATTTCGGAGGTTAGTTTGCAGTGAATTCGGGAGATTAGTTTCCATAGAACAAGATTTGGAGAGGTTCATTTTAGGATTTATTTGTTAGATGATATAATATTAAATTTGCCTTTACTCATCTGCTTAAGCTTTTGGGTCTATCGGTGATTTAAGATGGTATCAGAGCAGGTAGTCCCTGGAATGTTATTTCCTCCCCTATTATTCATGATTTCTACTTGTTCGGTCTTATTCATATTTCAAATCCACAAGTGAGGGGGGAGTGTCGGGGATTTAAGATTATTTAATTAAGGCTGTGTGTCTAAATCTCTTGCCTTGGATGCAGCATTTTCTTCAGTTTTGATATGAGAATGAATCAAGTATTGTATCCAATGGAATTAGCATGCTGGTAGTTTCTTCCGTTCCTGCCAACATGAGCCTAGTTTAGTAGTTAAGGCTTGACTCCTTGAAGTTTGAAGTTCAAATTCTTCAAATTCAACCATCATGGGTTGGCCTAGTGGTAAAAGAAGAGCAAAGTCTCAATATATGGCTCAAAGAGGTCATGGGTTCAATCTATAAAAAAGTAAAAAAAGTTTGAAGTTTAAATTCTCACTCCGTCATATTCGTATAAAACAAAAATTTATTCTATTTCCTTGACTGTTATTTTCTCTCTTACCCCAATATTCTTGTGGCCTCCGGCATCATCATTCATTACTACTTGTTCTGCATCTTTTGTGAGTTGAGAATTGAGTGAATAAAGCTTTACTGCATGTTTATTACTAAATGTCTGGTCCAGTCTAATTGTCTCAACTCATTGGAGTTGTTTTCTTAGAACTCAGGGACAGTTGTACATTCTATAGAACAAATCCTGTTCAAGTAAGTTCGTGTCTCAACTCCTTGGAGTTTAGACCACATCTTGGCAATTGTGAATTATTGAATGGTGTAAAGGTCTGCTAACCAGAATTAGTAGTCTTGTTCACTTCTCAGTGATGGTTGTATACTTAGTCTTCCATCATTCTCTTATCATTTCACTGGACGATGTCGATGATTGAAATGTGTTGCATTGCAATAATGATGTTGCTAATGGGTCGAGTGAGTGACGTCCTAATAAATGGTTTCGTTTAATATTTTAGTTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGCATTCAAGCTGAGAATCGAGCGGCTATGGAGGCTGCGGAGGAGCTACACAGGAAGAAACTAGCGCAAGAACGGGAAGGGGAAAAAGACGAGGAGGTAGACACCAAAGATGATCCCATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAGAACAGTTAA

mRNA sequence

ATGGCGCAGGCTGTTCAGAAGAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAATCTATTCTACACGCAGCCTTCATTCCTTTCGGCGACATCAAAGACGTCAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTTGTCACTTTCTTGGAAAAGGAAGACGCATCCGCCGCCATGGATAACATGGACGGTGCTGAGCTCTACGGTCGTGTACTTACTGTCAACTATGCCCTCCCTGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCTCAGCCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGCATTCAAGCTGAGAATCGAGCGGCTATGGAGGCTGCGGAGGAGCTACACAGGAAGAAACTAGCGCAAGAACGGGAAGGGGAAAAAGACGAGGAGGTAGACACCAAAGATGATCCCATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAGAACAGTTAA

Coding sequence (CDS)

ATGGCGCAGGCTGTTCAGAAGAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAATCTATTCTACACGCAGCCTTCATTCCTTTCGGCGACATCAAAGACGTCAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTTGTCACTTTCTTGGAAAAGGAAGACGCATCCGCCGCCATGGATAACATGGACGGTGCTGAGCTCTACGGTCGTGTACTTACTGTCAACTATGCCCTCCCTGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCTCAGCCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGCATTCAAGCTGAGAATCGAGCGGCTATGGAGGCTGCGGAGGAGCTACACAGGAAGAAACTAGCGCAAGAACGGGAAGGGGAAAAAGACGAGGAGGTAGACACCAAAGATGATCCCATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAGAACAGTTAA

Protein sequence

MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS

Homology

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BLAST of HG10004379 vs. NCBI nr
Match: XP_008445441.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo])

HSP 1 Score: 328.9 bits (842), Expect = 2.5e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           +QAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of HG10004379 vs. NCBI nr
Match: XP_004144165.1 (peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 hypothetical protein Csa_018234 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 5.6e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           +QAENRAAMEAAEELHRKKLAQEREGEKDEEVDTK DPMAKAEAEVLRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of HG10004379 vs. NCBI nr
Match: KAA0064773.1 (peptidyl-prolyl cis-trans isomerase E [Cucumis melo var. makuwa])

HSP 1 Score: 327.4 bits (838), Expect = 7.3e-86
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           +Q ENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQ S
Sbjct: 121 LQTENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of HG10004379 vs. NCBI nr
Match: XP_038884408.1 (peptidyl-prolyl cis-trans isomerase E [Benincasa hispida])

HSP 1 Score: 327.0 bits (837), Expect = 9.6e-86
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           IQAENRA MEAAEELHRKKLAQEREGEK+EEVDTKDDPMAKAEAEVLRQ+S
Sbjct: 121 IQAENRATMEAAEELHRKKLAQEREGEKEEEVDTKDDPMAKAEAEVLRQSS 171

[Close]

BLAST of HG10004379 vs. NCBI nr
Match: XP_022132314.1 (peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 peptidyl-prolyl cis-trans isomerase E [Momordica charantia])

HSP 1 Score: 324.3 bits (830), Expect = 6.2e-85
Identity = 165/169 (97.63%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           AENRAAM+AAEELHRKKLAQEREGEK++E+DTKDDPMAKAEAEVLRQNS
Sbjct: 124 AENRAAMQAAEELHRKKLAQEREGEKEDEIDTKDDPMAKAEAEVLRQNS 172

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BLAST of HG10004379 vs. ExPASy Swiss-Prot
Match: A4FV72 (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.6e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of HG10004379 vs. ExPASy Swiss-Prot
Match: Q9QZH3 (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.6e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of HG10004379 vs. ExPASy Swiss-Prot
Match: Q5R723 (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-27
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW--------FERQQQE 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W         E  ++E
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 EEMQRIQAENRAAMEAAEE 135
           E  +  +AE +    AA++
Sbjct: 122 EGSEPPKAETQEGEPAAKK 135

[Close]

BLAST of HG10004379 vs. ExPASy Swiss-Prot
Match: Q9UNP9 (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-26
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW--------FERQQQE 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W         E  ++E
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 EEMQRIQAENRAAMEAAEE 135
           E  +  +AE +     A++
Sbjct: 122 EGSEPPKAETQEGEPIAKK 135

[Close]

BLAST of HG10004379 vs. ExPASy Swiss-Prot
Match: Q9V3G3 (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp33 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-22
Identity = 62/152 (40.79%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 7   KNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAM 66
           K T+YVGGLA+EV E +L+ AFIPFGDI D++ P D  +Q+HR F F+ + + EDA+AA+
Sbjct: 5   KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query: 67  DNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQ-------QQEEEMQ 126
           DNM+ +EL GR + VN A P R+K      + +PIWAD D W ++        + E E +
Sbjct: 65  DNMNDSELCGRTIRVNLAKPVRVKED----SFKPIWAD-DDWLQKHAGATLQPEGEPEAE 124

Query: 127 RIQAENR--AAMEAAEELHRKKLAQEREGEKD 150
           +++  +   A +E AE+ + +     R G  D
Sbjct: 125 KVETPSTGPAVIEKAEKRNPQVFFDIRIGGND 151

[Close]

BLAST of HG10004379 vs. ExPASy TrEMBL
Match: A0A1S3BCQ8 (peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.2e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           +QAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of HG10004379 vs. ExPASy TrEMBL
Match: A0A0A0KGY3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.7e-86
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           +QAENRAAMEAAEELHRKKLAQEREGEKDEEVDTK DPMAKAEAEVLRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of HG10004379 vs. ExPASy TrEMBL
Match: A0A5A7V9E9 (Peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00780 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.6e-86
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           +Q ENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQ S
Sbjct: 121 LQTENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of HG10004379 vs. ExPASy TrEMBL
Match: A0A6J1BSQ7 (peptidyl-prolyl cis-trans isomerase E OS=Momordica charantia OX=3673 GN=LOC111005196 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 165/169 (97.63%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           AENRAAM+AAEELHRKKLAQEREGEK++E+DTKDDPMAKAEAEVLRQNS
Sbjct: 124 AENRAAMQAAEELHRKKLAQEREGEKEDEIDTKDDPMAKAEAEVLRQNS 172

[Close]

BLAST of HG10004379 vs. ExPASy TrEMBL
Match: A0A6J1K4K2 (peptidyl-prolyl cis-trans isomerase E OS=Cucurbita maxima OX=3661 GN=LOC111492233 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.9e-85
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQNS 172
           IQAENRA M+AAEELHRKK+AQEREGEK++EVDTKDDPMAKAEAE LRQNS
Sbjct: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 171

[Close]

BLAST of HG10004379 vs. TAIR 10
Match: AT1G13690.1 (ATPase E1 )

HSP 1 Score: 285.4 bits (729), Expect = 3.0e-77
Identity = 140/165 (84.85%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QA+QKNTLYVGGLA+EVNESILHAAFIPFGDIKDVKTPLDQA QKHRSFGFVTFLE+EDA
Sbjct: 8   QAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDA 67

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPE+IKGGEQGWAA P+WADADTWFERQQQE+E+ ++Q
Sbjct: 68  SAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAHPLWADADTWFERQQQEKEILKMQ 127

Query: 123 AENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVL 168
           AEN+AAME AEELHRKKLA++R+GE +E+ DTK+DPMA+AEA+ L
Sbjct: 128 AENKAAMETAEELHRKKLAEDRQGEMEEDTDTKNDPMARAEADAL 172

[Close]

BLAST of HG10004379 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + L++GG+A  ++E  L  AF  +G++ D +  LD+ T + R FGFVTF   E A
Sbjct: 35  RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQG 96
           S+A+  +DG +L+GRV+ VNYA  +R  GG  G
Sbjct: 95  SSAIQALDGRDLHGRVVKVNYA-NDRTSGGGFG 126

[Close]

BLAST of HG10004379 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 2   AQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKED 61
           + A   + L++GGL+  V+E  L  AF  FG++ +V+   D+ + + R FGFV F E+ D
Sbjct: 35  SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query: 62  ASAAMDNMDGAELYGRVLTVNYALPERIKGG 93
           A +A D MDG  L GR L +++AL ER++GG
Sbjct: 95  ALSAKDAMDGKGLLGRPLRISFAL-ERVRGG 124

[Close]

BLAST of HG10004379 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 10  LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNM 69
           L++GGL+   +++ L  AF  FGD+ D K  +D+ T + R FGFV F ++  A+AA+  M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 70  DGAELYGRVLTVNYALPERIKGGEQG 96
           DG EL GR + VN A  +R  GG  G
Sbjct: 97  DGKELNGRHIRVNPA-NDRPSGGYGG 121

[Close]

BLAST of HG10004379 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 11 YVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMD 70
          +VGGLA   N+  L   F  FGD+ D K   D+ + + R FGFVTF +++    A++ M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 71 GAELYGRVLTVNYALPERIKGGEQGW 97
          G EL GRV+TVN A      GG  GW
Sbjct: 69 GKELDGRVITVNEAQSRGSGGG--GW 92

The following BLAST results are available for this feature:

BLAST of HG10004379 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445441.1	2.5e-86	98.83	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo]	[more]
XP_004144165.1	5.6e-86	98.83	peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 hypothetical...	[more]
KAA0064773.1	7.3e-86	98.25	peptidyl-prolyl cis-trans isomerase E [Cucumis melo var. makuwa]	[more]
XP_038884408.1	9.6e-86	98.25	peptidyl-prolyl cis-trans isomerase E [Benincasa hispida]	[more]
XP_022132314.1	6.2e-85	97.63	peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 pept...	[more]

BLAST of HG10004379 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV72	5.6e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1	[more]
Q9QZH3	5.6e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2	[more]
Q5R723	6.1e-27	48.20	Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1	[more]
Q9UNP9	2.3e-26	47.48	Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1	[more]
Q9V3G3	4.6e-22	40.79	Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp3...	[more]

BLAST of HG10004379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCQ8	1.2e-86	98.83	peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE...	[more]
A0A0A0KGY3	2.7e-86	98.83	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV...	[more]
A0A5A7V9E9	3.6e-86	98.25	Peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1BSQ7	3.0e-85	97.63	peptidyl-prolyl cis-trans isomerase E OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1K4K2	3.9e-85	96.49	peptidyl-prolyl cis-trans isomerase E OS=Cucurbita maxima OX=3661 GN=LOC11149223...	[more]

BLAST of HG10004379 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13690.1	3.0e-77	84.85	ATPase E1	[more]
AT5G61030.1	1.9e-15	40.86	glycine-rich RNA-binding protein 3	[more]
AT3G08000.1	2.1e-14	41.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.4	4.4e-12	43.02	glycine-rich RNA-binding protein 2	[more]
AT4G39260.3	5.7e-12	43.02	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..163
None	No IPR available	PANTHER	PTHR15241:SF297	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E	coord: 3..170
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..170
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 3.2E-23 score: 93.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 e-value: 1.1E-18 score: 66.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 18.188618
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..153 e-value: 4.7E-26 score: 93.5
IPR034168	Peptidyl-prolyl cis-trans isomerase E, RNA recognition motif	CDD	cd12347	RRM_PPIE	coord: 10..82 e-value: 2.97028E-44 score: 138.895
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004379.1	HG10004379.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding