HG10004376 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004376
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein SPIRAL1-like 1
Location	Chr08: 16420549 .. 16421452 (+)
RNA-Seq Expression	HG10004376
Synteny	HG10004376

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACTTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCTAAAGGTGGCCGCCAAGCACCACCGCCTTCAAATGAAGGGAAGACTGTACCCAAACCAGCAGTGTCCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGCTACCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGTATGGCTACCTTTTATAATTATTCTGCAATTTATCTGGTCTAATTTAACTGCTAGCTAGCATGTTGTCGATAATTCCCAGAGAAGTAATATTGTTCCCCGTTTTGTTTTAAACAAATTTTACTTGATTACATTCAATTCCTCCCCACCCCACATCTGGAGAAAAGGAAAATAAGTATGTAATCTTGGATTAGATCTATATTGCACCTATCTAGTTAACATACGATACGACAAATACAGTTTGGTTGATTAGATGTGTATTGCACCTATTTATCTTGTCTCATCTTCCTCTTTCCTGACCCATCTTTGAATTGTCAAAGACATTGCCCACCAGTGACTTGTCTTTTGACTATTTTCTGGACTGGCAAGCAAAGATGTTTGCATCCCCTTGACTTGTTTTACATATATGAGGTCTTAATAACTTCACAGAGGAATAATGATCCAAAAGCGCCCAAACGGGCATGCGCAAATGAGGATTGTAACTGACCTTTTTCGAAAAGGGCTTTATAGTGATTGATTAGTTTTGTTTGTGGATGGTGCAGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGTGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

mRNA sequence

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACTTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCTAAAGGTGGCCGCCAAGCACCACCGCCTTCAAATGAAGGGAAGACTGTACCCAAACCAGCAGTGTCCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGCTACCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGTGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Coding sequence (CDS)

ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTACTTGTTTGGTGATGGAGATGCTCCTAATGCAGGTGCACCTAAAGGTGGCCGCCAAGCACCACCGCCTTCAAATGAAGGGAAGACTGTACCCAAACCAGCAGTGTCCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGCTACCAAGCAGATTCCAGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTTCACGCCGCCCCGGGTGGTGGATCTTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAATGA

Protein sequence

MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK

Homology

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BLAST of HG10004376 vs. NCBI nr
Match: XP_008445444.1 (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445447.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >KAA0064770.1 protein SPIRAL1-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 4.7e-55
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTV KPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of HG10004376 vs. NCBI nr
Match: XP_038886245.1 (protein SPIRAL1-like 1 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-54
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP NEGKTV KPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPLNEGKTVSKPAVSKPAATASP 60

Query: 61  PADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of HG10004376 vs. NCBI nr
Match: XP_004144171.1 (protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 protein SPIRAL1-like 1 [Cucumis sativus] >XP_031743708.1 protein SPIRAL1-like 1 [Cucumis sativus] >KGN47654.1 hypothetical protein Csa_018315 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP +E KT+ KPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD +KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of HG10004376 vs. NCBI nr
Match: XP_022961880.1 (protein SPIRAL1-like 2 [Cucurbita moschata] >XP_022997295.1 protein SPIRAL1-like 2 [Cucurbita maxima] >XP_023546068.1 protein SPIRAL1-like 2 [Cucurbita pepo subsp. pepo] >KAG6598640.1 Protein SPIRAL1-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029577.1 Protein SPIRAL1-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 1.9e-48
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+APNAGAPKGG+   PPSNEGK V KPA SKPAATASPPA
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAGAPKGGQ--APPSNEGKAVSKPAASKPAATASPPA 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 121
           DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 62  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 117

[Close]

BLAST of HG10004376 vs. NCBI nr
Match: KAG6585249.1 (Protein SPIRAL1-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020170.1 Protein SPIRAL1-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 7.5e-45
Identity = 107/129 (82.95%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP-----------SNEGKTVPKPAV 62
           GRGVSSGGGQSSLGYLFG G++PNAGAPKGG QAP P           SNEGK V KPA 
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGESPNAGAPKGG-QAPAPAPAPAPAPAPRSNEGKPVSKPAA 61

Query: 63  SKPAATASPPADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 121
           SKPAATASPP D+ KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD
Sbjct: 62  SKPAATASPPTDSGKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD 121

[Close]

BLAST of HG10004376 vs. ExPASy Swiss-Prot
Match: B3H4F1 (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-31
Identity = 78/116 (67.24%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP PS+E  T+P  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSE--TLPISADPSPKHVAAQTV 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           + TKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of HG10004376 vs. ExPASy Swiss-Prot
Match: Q7Y1L9 (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-27
Identity = 77/115 (66.96%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 4   RGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASP-PA 63
           RG S+GGGQSSLGYLFG  +AP   A      AP P+      P  AV+ PA   SP  A
Sbjct: 3   RGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPA--PAPAPAAAVAAPAEKPSPAKA 62

Query: 64  DATKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           DATKQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 63  DATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115

[Close]

BLAST of HG10004376 vs. ExPASy Swiss-Prot
Match: Q9LE54 (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A         P+    +   P     AA A    
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN-----KTPAETESSAHAPPTQAAAANA---V 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D+ KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of HG10004376 vs. ExPASy Swiss-Prot
Match: Q2QQ99 (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-26
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPA-VSKPAATASPP 62
           GRGVSSGGGQSSLGYLFG G+AP                  K+  KPA V KPA ++S  
Sbjct: 2   GRGVSSGGGQSSLGYLFGGGEAP------------------KSAEKPAPVQKPAPSSS-- 61

Query: 63  ADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           A+  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSSLDYLF G
Sbjct: 62  AEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96

[Close]

BLAST of HG10004376 vs. ExPASy Swiss-Prot
Match: Q2R0W8 (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-26
Identity = 71/116 (61.21%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPP- 62
           GRGVSSGGGQSSLGYLFG G+   A   K     P  + E +T P P      A A+ P 
Sbjct: 4   GRGVSSGGGQSSLGYLFGGGETAPAAKAK-----PAAAAEKETTPAPVKKAAVAAAASPS 63

Query: 63  -ADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
            A+  K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 64  AAEKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114

[Close]

BLAST of HG10004376 vs. ExPASy TrEMBL
Match: A0A1S3BCR3 (protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.3e-55
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTV KPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of HG10004376 vs. ExPASy TrEMBL
Match: A0A5A7VC71 (Protein SPIRAL1-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00750 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.3e-55
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTV KPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVSKPAVSKPAATASP 60

Query: 61  PADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of HG10004376 vs. ExPASy TrEMBL
Match: A0A0A0KFN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366520 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.2e-53
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASP 60
           MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPP +E KT+ KPAVSKPAATASP
Sbjct: 1   MGGRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPPSEAKTISKPAVSKPAATASP 60

Query: 61  PADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           PAD +KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 61  PADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of HG10004376 vs. ExPASy TrEMBL
Match: A0A6J1K972 (protein SPIRAL1-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111492241 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.3e-49
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+APNAGAPKGG+   PPSNEGK V KPA SKPAATASPPA
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAGAPKGGQ--APPSNEGKAVSKPAASKPAATASPPA 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 121
           DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 62  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 117

[Close]

BLAST of HG10004376 vs. ExPASy TrEMBL
Match: A0A6J1HDG7 (protein SPIRAL1-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111462521 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.3e-49
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVSSGGGQSSLGYLFG G+APNAGAPKGG+   PPSNEGK V KPA SKPAATASPPA
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAGAPKGGQ--APPSNEGKAVSKPAASKPAATASPPA 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 121
           DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 62  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 117

[Close]

BLAST of HG10004376 vs. TAIR 10
Match: AT1G26355.1 (SPIRAL1-like1 )

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-32
Identity = 78/116 (67.24%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVS GGGQSSLGYLFG G+AP          AP PS+E  T+P  A   P   A+   
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPKPAI----NNAPAPSSE--TLPISADPSPKHVAAQTV 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 119
           + TKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  NVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of HG10004376 vs. TAIR 10
Match: AT1G69230.1 (SPIRAL1-like2 )

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-28
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A         P+    +   P     AA A    
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN-----KTPAETESSAHAPPTQAAAANA---V 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D+ KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of HG10004376 vs. TAIR 10
Match: AT1G69230.2 (SPIRAL1-like2 )

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-28
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATASPPA 62
           GRGVS+GGGQSSLGYLFG G+AP   A         P+    +   P     AA A    
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVN-----KTPAETESSAHAPPTQAAAANA---V 61

Query: 63  DATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
           D+ KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  DSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of HG10004376 vs. TAIR 10
Match: AT2G03680.1 (spiral1 )

HSP 1 Score: 114.0 bits (284), Expect = 8.3e-26
Identity = 74/118 (62.71%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATAS--- 62
           GRG S GGGQSSL YLFG GDAP        R AP  SN G   P  AV+  A T +   
Sbjct: 2   GRGNSCGGGQSSLDYLFG-GDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 61

Query: 63  -PPADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
             PA+  KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF G
Sbjct: 62  VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTG 117

[Close]

BLAST of HG10004376 vs. TAIR 10
Match: AT2G03680.2 (spiral1 )

HSP 1 Score: 114.0 bits (284), Expect = 8.3e-26
Identity = 74/118 (62.71%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 3   GRGVSSGGGQSSLGYLFGDGDAPNAGAPKGGRQAPPPSNEGKTVPKPAVSKPAATAS--- 62
           GRG S GGGQSSL YLFG GDAP        R AP  SN G   P  AV+  A T +   
Sbjct: 2   GRGNSCGGGQSSLDYLFG-GDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 61

Query: 63  -PPADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 117
             PA+  KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF G
Sbjct: 62  VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTG 117

The following BLAST results are available for this feature:

BLAST of HG10004376 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445444.1	4.7e-55	98.33	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: prot...	[more]
XP_038886245.1	1.8e-54	97.50	protein SPIRAL1-like 1 [Benincasa hispida]	[more]
XP_004144171.1	1.3e-52	94.17	protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 protein SPIRAL1-like 1 ...	[more]
XP_022961880.1	1.9e-48	92.37	protein SPIRAL1-like 2 [Cucurbita moschata] >XP_022997295.1 protein SPIRAL1-like...	[more]
KAG6585249.1	7.5e-45	82.95	Protein SPIRAL1-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020...	[more]

BLAST of HG10004376 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H4F1	3.8e-31	67.24	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
Q7Y1L9	1.5e-27	66.96	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 ...	[more]
Q9LE54	1.9e-27	61.40	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
Q2QQ99	2.8e-26	62.61	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]
Q2R0W8	3.6e-26	61.21	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 ...	[more]

BLAST of HG10004376 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCR3	2.3e-55	98.33	protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=3 SV=1	[more]
A0A5A7VC71	2.3e-55	98.33	Protein SPIRAL1-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8...	[more]
A0A0A0KFN2	6.2e-53	94.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366520 PE=3 SV=1	[more]
A0A6J1K972	9.3e-49	92.37	protein SPIRAL1-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111492241 PE=3 SV=1	[more]
A0A6J1HDG7	9.3e-49	92.37	protein SPIRAL1-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111462521 PE=3 SV=1	[more]

BLAST of HG10004376 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26355.1	2.7e-32	67.24	SPIRAL1-like1	[more]
AT1G69230.1	1.4e-28	61.40	SPIRAL1-like2	[more]
AT1G69230.2	1.4e-28	61.40	SPIRAL1-like2	[more]
AT2G03680.1	8.3e-26	62.71	spiral1	[more]
AT2G03680.2	8.3e-26	62.71	spiral1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..95
None	No IPR available	PANTHER	PTHR33403:SF28	PROTEIN SPIRAL1-LIKE 2	coord: 3..118
IPR039613	Protein SPIRAL1-like	PANTHER	PTHR33403	SPR1	coord: 3..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004376.1	HG10004376.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
cellular_component	GO:0010005	cortical microtubule, transverse to long axis
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding