HG10004340 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004340
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like
Location	Chr08: 16144224 .. 16146819 (-)
RNA-Seq Expression	HG10004340
Synteny	HG10004340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCTCTTCCATTTCTATGCTCCGCCACCACACCGCCGCTATCGCCTCCAGTTCATCAATCCCGGTCTTCGGAGATGTTCTCCGGCGAGTCTTCAACTTCCGATGCCTCTCAATTGTTGCCAAACAGCATAACCCTAACAATGTCTCCAATAAGCCTCCGCCAAGCAAGAATCTACTCCGGGCTAAACATACTTTCAAGGATTATTCATCTCTTGCACCGGTTCTCTCTCTTCAAGAAAATCCTCCTCTATCTAATTCTCAAGCCATCGGCACCGTCGCCGCTGCCCAAGCCAACTTCATGCGCGTAATTGTTCAGTCGCTTCCTTCTCAACTTTCTGACCGTCCGAACGACGATTCGGAGCTTTCTGGAAGCTTAGAAGGTGAGTCTTCGGAATCTTCTAGGCTTGGAGTTGAGTTGCTGTGCGTGGTGAAGGCTGTCCTGAAGAAAATAAAGAGGAGAGTGTTAGTCGGAGACAAGGTGGTTGTTGGTTCCATTGATTGGGTGGACCGCAGAGGAATGATCGAGAATGTCTTCCAAAGAAGCTCGGAGATCCTTGATCCTCCGGTGGCCAATGTGGATCACTTGCTTGTGCTCTTCTCCATGGATCAGCCGAAGTTAGAGCCGTTTACACTTACGAGGTTTCTAGTTGAAGCAGAGTCTACAGGCATTCCACTGACTCTGGGTCTCAATAAGTTGGAACTCGTTGATGAAGAGGTTGTGTTTTCAATCTTCTGATTACTAAACTCTCTAATAAGTATTTTAAATACTTTCCAATACGTTTCCCTATGAGTAGCAATCACTTATGTAGCAGAATACATGATGATTTGAACATCGAAACTCAACAAAAGCAATGAAGGTTTAATACCGTGTGCAAAAAGAAGATACACAATCACAGTGGTAATGTTGTAGAATGTAGCTATAATAACATAACAAGTTTTGCTTCTAGTTTGGAAATGATTAGGAAAAAATGAGCCTCAATTAAAGCATTGATTTAGTCTTACTGATACCACAGCTTTGTTGCTTGGTTGTCACCCTCTTTATTTTTGTCATGGGTGCTTCTTTTTCTTATAGTATACCTCAGCCCTCAACTTGTAATTTGTAACAAGAAACTTGGTTCTTATGTTGCTTGTGATATTGCATATATTTTACACATAGATCCTTGAATCTCTCTAGCAGAGCAGTGATTGATCAAACTTTGTCATAATTGTGCATGCATTTCCTTTCTTAATGCTGACAGTGGTTAGCAATGGCATATGCAGACACTGGTTTCCTGGAAGTCCAGACTGCGTAGCTGGGGTTATGACCCCCTTTTTTGCAGTGTTCAAACCAGGACTGGTCTTGATACCCTTGCATATATTTTGAGAGATCAAACTACTGTTATTGTGGGTCCAAGTGGAGTTGGGAAATCAAGTCTCATCAATGCTCTCAGAAACAATAACTGTGCTGCTGATGCTGTAGACGGAGATAATTGGTTTGATCCGGTGTGTTTGATCATTCTTCCAGTTTTAACTCTATGTCGGTTAACGTATTAATTCTGGGTCTTTCTTGAACACTACGTCTCATAAGGGTTTATATTTTTTTTTGTCTATTCACAGATTCTAGGTAGCAAGTGGTTCGAGGATCAGCGTGTTGCAGAAGTTTCAACAAGAAGTGGTAGAGGGAAGCATACTACTCGTCATGTTTCTCTCTTACCGTTGTCGGGAGGGGGCTATCTGGCAGACACTCCTGGTTTTAACCAGCCCAGTTTGATGAAAATAACCAAACAATCTCTTGCCCAAGCCTTCCCCGAGGTTTATACTACTTTGCAATGTTGACATTGACTGATTAAGATTTTTTTATTTCTGCCATAAATTTCTAACTTCTGTAGCATTTCTTGGGTTCAACTAAATTCTCTACAGATCCAGAAAATGCTTCTTGCCAGCAAACCTGCTAAATGCTCTTTTAATGATTGCTTACATCTTGGCGAACCGGGATGTGTTATTAAAGGAGAATGGGAGCGCTACCAGTACTATTTCCAACTTCTTGATGAAATCAGAATCAGGGAAGAATTCCAGTTGAGAACATTTGGAACGAAAAGAGAGGGGGATGTAAGGTATGTAAATTTTAGAGGTTGTGAATAATAGAACTTGCATATCTTGCATTCTTCATATCTAATTGAGGGGGTAGTACATTAAAAAGAATGCAATGCTCTGCGATGTTACTTCATTTCAATATTCTCTTTTAGATTTTAAACAAGTTGCCACCCTAGAACTTGGTTATGTGACTAGCTACAGAAGTTCTCCTAGTGACCTAATGCCATTTAGTTACTTATATGTAGCTTGAATAACGATGTTGCTTGGTTAGCTCAAATCCATAATTCTCATATGAACCAAATCCGAAACCATATAATGATGGAATTTCTCTTTGCAGGATTAAGGTTGGAGATATGGGTGCTCAGCAAGCAGAACCAAGGTTGGAGCTCAAGAAGCATCGGAGACAATCTCGTAAGAAAGTGAACCAGTCGATACTTGACGAGTTGGATGAGTTGGAAGACGATGATGACGAGGAAAACGATCCCGTTTTGAGAGCAATGAGGAATGAAAACCAATAG

mRNA sequence

ATGGCGATCTCTTCCATTTCTATGCTCCGCCACCACACCGCCGCTATCGCCTCCAGTTCATCAATCCCGGTCTTCGGAGATGTTCTCCGGCGAGTCTTCAACTTCCGATGCCTCTCAATTGTTGCCAAACAGCATAACCCTAACAATGTCTCCAATAAGCCTCCGCCAAGCAAGAATCTACTCCGGGCTAAACATACTTTCAAGGATTATTCATCTCTTGCACCGGTTCTCTCTCTTCAAGAAAATCCTCCTCTATCTAATTCTCAAGCCATCGGCACCGTCGCCGCTGCCCAAGCCAACTTCATGCGCGTAATTGTTCAGTCGCTTCCTTCTCAACTTTCTGACCGTCCGAACGACGATTCGGAGCTTTCTGGAAGCTTAGAAGGTGAGTCTTCGGAATCTTCTAGGCTTGGAGTTGAGTTGCTGTGCGTGGTGAAGGCTGTCCTGAAGAAAATAAAGAGGAGAGTGTTAGTCGGAGACAAGGTGGTTGTTGGTTCCATTGATTGGGTGGACCGCAGAGGAATGATCGAGAATGTCTTCCAAAGAAGCTCGGAGATCCTTGATCCTCCGGTGGCCAATGTGGATCACTTGCTTGTGCTCTTCTCCATGGATCAGCCGAAGTTAGAGCCGTTTACACTTACGAGGTTTCTAGTTGAAGCAGAGTCTACAGGCATTCCACTGACTCTGGGTCTCAATAAGTTGGAACTCGTTGATGAAGAGACACTGGTTTCCTGGAAGTCCAGACTGCGTAGCTGGGGTTATGACCCCCTTTTTTGCAGTGTTCAAACCAGGACTGGTCTTGATACCCTTGCATATATTTTGAGAGATCAAACTACTGTTATTGTGGGTCCAAGTGGAGTTGGGAAATCAAGTCTCATCAATGCTCTCAGAAACAATAACTGTGCTGCTGATGCTGTAGACGGAGATAATTGGTTTGATCCGATTCTAGGTAGCAAGTGGTTCGAGGATCAGCGTGTTGCAGAAGTTTCAACAAGAAGTGGTAGAGGGAAGCATACTACTCGTCATGTTTCTCTCTTACCGTTGTCGGGAGGGGGCTATCTGGCAGACACTCCTGGTTTTAACCAGCCCAGTTTGATGAAAATAACCAAACAATCTCTTGCCCAAGCCTTCCCCGAGATCCAGAAAATGCTTCTTGCCAGCAAACCTGCTAAATGCTCTTTTAATGATTGCTTACATCTTGGCGAACCGGGATGTGTTATTAAAGGAGAATGGGAGCGCTACCAGTACTATTTCCAACTTCTTGATGAAATCAGAATCAGGGAAGAATTCCAGTTGAGAACATTTGGAACGAAAAGAGAGGGGGATGTAAGGATTAAGGTTGGAGATATGGGTGCTCAGCAAGCAGAACCAAGGTTGGAGCTCAAGAAGCATCGGAGACAATCTCGTAAGAAAGTGAACCAGTCGATACTTGACGAGTTGGATGAGTTGGAAGACGATGATGACGAGGAAAACGATCCCGTTTTGAGAGCAATGAGGAATGAAAACCAATAG

Coding sequence (CDS)

ATGGCGATCTCTTCCATTTCTATGCTCCGCCACCACACCGCCGCTATCGCCTCCAGTTCATCAATCCCGGTCTTCGGAGATGTTCTCCGGCGAGTCTTCAACTTCCGATGCCTCTCAATTGTTGCCAAACAGCATAACCCTAACAATGTCTCCAATAAGCCTCCGCCAAGCAAGAATCTACTCCGGGCTAAACATACTTTCAAGGATTATTCATCTCTTGCACCGGTTCTCTCTCTTCAAGAAAATCCTCCTCTATCTAATTCTCAAGCCATCGGCACCGTCGCCGCTGCCCAAGCCAACTTCATGCGCGTAATTGTTCAGTCGCTTCCTTCTCAACTTTCTGACCGTCCGAACGACGATTCGGAGCTTTCTGGAAGCTTAGAAGGTGAGTCTTCGGAATCTTCTAGGCTTGGAGTTGAGTTGCTGTGCGTGGTGAAGGCTGTCCTGAAGAAAATAAAGAGGAGAGTGTTAGTCGGAGACAAGGTGGTTGTTGGTTCCATTGATTGGGTGGACCGCAGAGGAATGATCGAGAATGTCTTCCAAAGAAGCTCGGAGATCCTTGATCCTCCGGTGGCCAATGTGGATCACTTGCTTGTGCTCTTCTCCATGGATCAGCCGAAGTTAGAGCCGTTTACACTTACGAGGTTTCTAGTTGAAGCAGAGTCTACAGGCATTCCACTGACTCTGGGTCTCAATAAGTTGGAACTCGTTGATGAAGAGACACTGGTTTCCTGGAAGTCCAGACTGCGTAGCTGGGGTTATGACCCCCTTTTTTGCAGTGTTCAAACCAGGACTGGTCTTGATACCCTTGCATATATTTTGAGAGATCAAACTACTGTTATTGTGGGTCCAAGTGGAGTTGGGAAATCAAGTCTCATCAATGCTCTCAGAAACAATAACTGTGCTGCTGATGCTGTAGACGGAGATAATTGGTTTGATCCGATTCTAGGTAGCAAGTGGTTCGAGGATCAGCGTGTTGCAGAAGTTTCAACAAGAAGTGGTAGAGGGAAGCATACTACTCGTCATGTTTCTCTCTTACCGTTGTCGGGAGGGGGCTATCTGGCAGACACTCCTGGTTTTAACCAGCCCAGTTTGATGAAAATAACCAAACAATCTCTTGCCCAAGCCTTCCCCGAGATCCAGAAAATGCTTCTTGCCAGCAAACCTGCTAAATGCTCTTTTAATGATTGCTTACATCTTGGCGAACCGGGATGTGTTATTAAAGGAGAATGGGAGCGCTACCAGTACTATTTCCAACTTCTTGATGAAATCAGAATCAGGGAAGAATTCCAGTTGAGAACATTTGGAACGAAAAGAGAGGGGGATGTAAGGATTAAGGTTGGAGATATGGGTGCTCAGCAAGCAGAACCAAGGTTGGAGCTCAAGAAGCATCGGAGACAATCTCGTAAGAAAGTGAACCAGTCGATACTTGACGAGTTGGATGAGTTGGAAGACGATGATGACGAGGAAAACGATCCCGTTTTGAGAGCAATGAGGAATGAAAACCAATAG

Protein sequence

MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNLLRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDDSELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNNCAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDELDELEDDDDEENDPVLRAMRNENQ

Homology

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BLAST of HG10004340 vs. NCBI nr
Match: XP_038885175.1 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Benincasa hispida] >XP_038885176.1 small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 907.9 bits (2345), Expect = 3.9e-260
Identity = 462/497 (92.96%), Postives = 486/497 (97.79%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRH T AIA++SSIPVFG+VLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHQTTAIAATSSIPVFGNVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAPVLS Q+NPPLS SQAIGTVAAAQANFMRVIVQ+LPSQLSD  ND+
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQALPSQLSDSSNDN 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGSLE +SSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN+F
Sbjct: 121 SERSGSLENDSSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENIF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEIL+PPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILEPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           TLVSWKSRLRSWGYDPLFCSVQTRTGLD+LAYILRDQTTVIVGPSGVGKSSLINALR+N+
Sbjct: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNS 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
            AADA+DGDNWFD ILGSKWF+DQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF
Sbjct: 301 RAADAIDGDNWFDQILGSKWFKDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMK+TKQSLA+AFPEIQKMLLAS+PAKCSFNDCLHLGEPGCVIKG+WERYQYYFQL
Sbjct: 361 NQPSLMKVTKQSLARAFPEIQKMLLASEPAKCSFNDCLHLGEPGCVIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGA+QAEPRLELKKHRRQSRK+VNQSIL+EL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGARQAEPRLELKKHRRQSRKRVNQSILEEL 480

Query: 481 DELEDDDD-EENDPVLR 497
           DELED+DD EENDP+LR
Sbjct: 481 DELEDEDDSEENDPILR 497

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BLAST of HG10004340 vs. NCBI nr
Match: XP_004144195.1 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Cucumis sativus] >KGN47617.1 hypothetical protein Csa_018974 [Cucumis sativus])

HSP 1 Score: 904.0 bits (2335), Expect = 5.6e-259
Identity = 462/504 (91.67%), Postives = 484/504 (96.03%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTAAIA++SSIPVFG+VLRRVFNFRC SIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTAAIAATSSIPVFGNVLRRVFNFRCFSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAPVLS Q+NPPLS SQAIGTVAAAQANFMRVIVQ+LPSQ S  PNDD
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLPSQFSQSPNDD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
            E SGSLE +SS+SS LGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 LERSGSLEDDSSKSSMLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSMDQP+LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           TLVSWKSRLRSWGYDPLFCSVQT  GLD+LA+ILRDQTTVIVGPSGVGKSSLINALRN+N
Sbjct: 241 TLVSWKSRLRSWGYDPLFCSVQTGAGLDSLAFILRDQTTVIVGPSGVGKSSLINALRNSN 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
            A DA D DNWFDPILGSKWFE+QRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF
Sbjct: 301 RATDASDTDNWFDPILGSKWFEEQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKML AS+PAKCSFNDCLHLGEPGCVIKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLHASEPAKCSFNDCLHLGEPGCVIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVG+MG +QAEPRLELKKHRRQSRK+VNQSILDEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGEMGVKQAEPRLELKKHRRQSRKRVNQSILDEL 480

Query: 481 DELEDDDD-EENDPVLRAMRNENQ 504
           DELED+DD EE +P+LRAM+NENQ
Sbjct: 481 DELEDEDDLEETNPILRAMKNENQ 504

[Close]

BLAST of HG10004340 vs. NCBI nr
Match: KAA0064736.1 (putative ribosome biogenesis GTPase RsgA 1 [Cucumis melo var. makuwa])

HSP 1 Score: 901.7 bits (2329), Expect = 2.8e-258
Identity = 460/503 (91.45%), Postives = 482/503 (95.83%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTAA+A++SS PVFG+V+RRVF FRC SIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTAALAATSSFPVFGNVIRRVFKFRCFSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAPVLS Q+NPPLS SQAIGTVAAAQANFMRVIVQ+LPSQ S+  NDD
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLPSQFSESSNDD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
            E SGSLE +SSESS LGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 LERSGSLENDSSESSMLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QR SEILDPPVANVDHLLVLFSMDQP+LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRKSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           T+VSWKSRLRSWGYDPLFCSVQT TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTGTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
            AADA+D DNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL+GGGYLADTPGF
Sbjct: 301 RAADALDTDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLTGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKML AS+PAKCSFNDCLHLGEPGC+IKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLRASEPAKCSFNDCLHLGEPGCIIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVG MGAQQAEPRLELKKHRRQSRK+VNQSILDEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGVMGAQQAEPRLELKKHRRQSRKRVNQSILDEL 480

Query: 481 DELEDDDDEENDPVLRAMRNENQ 504
           DE ++DD EE DP+LRAM+NENQ
Sbjct: 481 DE-DEDDLEETDPILRAMKNENQ 502

[Close]

BLAST of HG10004340 vs. NCBI nr
Match: XP_008445496.1 (PREDICTED: putative ribosome biogenesis GTPase RsgA 1 [Cucumis melo])

HSP 1 Score: 901.0 bits (2327), Expect = 4.7e-258
Identity = 460/503 (91.45%), Postives = 482/503 (95.83%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTAA+A++SS PVFG+V+RRVFNFRC SIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTAALAATSSFPVFGNVIRRVFNFRCFSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAPVLS Q+NPPLS SQAIGTVAAAQANFMRVIVQ+LPSQ S+   DD
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLPSQFSESSYDD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
            E SGSLE +SSESS LGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 LERSGSLENDSSESSMLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QR SEILDPPVANVDHLLVLFSMDQP+LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRKSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           T+VSWKSRLRSWGYDPLFCSVQT TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTGTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
            AADA+D DNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL+GGGYLADTPGF
Sbjct: 301 RAADALDTDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLTGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKML AS+PAKCSFNDCLHLGEPGC+IKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLRASEPAKCSFNDCLHLGEPGCIIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVG MGAQQAEPRLELKKHRRQSRK+VNQSILDEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGVMGAQQAEPRLELKKHRRQSRKRVNQSILDEL 480

Query: 481 DELEDDDDEENDPVLRAMRNENQ 504
           DE ++DD EE DP+LRAM+NENQ
Sbjct: 481 DE-DEDDLEETDPILRAMKNENQ 502

[Close]

BLAST of HG10004340 vs. NCBI nr
Match: XP_022132325.1 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 897.9 bits (2319), Expect = 4.0e-257
Identity = 458/507 (90.34%), Postives = 485/507 (95.66%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTA  A+++SIP FG+VLRR FN RC S+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTA--AATASIPAFGNVLRRFFNVRCFSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAP LS Q+NPPLS SQAIGTVAAAQANFMRVIVQSLPSQLSD  N D
Sbjct: 61  LRAKHTFKDYSSLAPALSPQDNPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNQD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGSLEG+SSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SEPSGSLEGDSSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSMDQPKLE FTLTRFL+EAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLESFTLTRFLIEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           TLVSWKSRLRSWGY+PLFCSVQT+TGLD+LAYILRDQTTVIVGPSGVGKSSLINALRNN+
Sbjct: 241 TLVSWKSRLRSWGYEPLFCSVQTKTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRNND 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
              DAV+GDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF
Sbjct: 301 RGVDAVEGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKMLLA++PA+CSFNDCLHLGEPGCVIKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLLANEPARCSFNDCLHLGEPGCVIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRK+VNQSIL+EL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDDDDEEN----DPVLRAMRNENQ 504
           DELED+D++++    DP+L+AMRNE Q
Sbjct: 481 DELEDEDEDDSLDKEDPILKAMRNEQQ 505

[Close]

BLAST of HG10004340 vs. ExPASy Swiss-Prot
Match: Q4V399 (Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=rsgA PE=2 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 9.8e-174
Identity = 314/448 (70.09%), Postives = 369/448 (82.37%), Query Frame = 0


Query: 60  LLRAKHTFKDY-SSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPN 119
           +LRAKH  K+Y SSL+PVLS +  P L  SQAIGTVA AQANFMRVIVQ + + ++   +
Sbjct: 1   MLRAKHIGKNYSSSLSPVLSPEHKPSLLESQAIGTVATAQANFMRVIVQDVANSVT---S 60

Query: 120 DDSELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 179
           DD           ++SS+ GVELLCVV+AVLKKI+RRVLVGDKV+VGSIDWVDRRGMIEN
Sbjct: 61  DD----------DNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIEN 120

Query: 180 VFQRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVD 239
           VF R SEILDPPVANVDHLLVLFS+DQPKLEPFTLTRFLVEAEST IPLTL LNK EL+ 
Sbjct: 121 VFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELIS 180

Query: 240 EETLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRN 299
           EE L +WK RLR W Y+PLFCSV T+ GLD +A++LRDQT+VIVGPSGVGKSSLIN LR+
Sbjct: 181 EEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRS 240

Query: 300 NNCAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTP 359
           N+     V+ +NWF+P+LG+KWF+DQRV EVS+RSGRGKHTTR+VSLLP+S GGYLADTP
Sbjct: 241 NH-GGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTP 300

Query: 360 GFNQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYF 419
           GFNQPSL+K+TK SLA  FPEI+ M+   +  KC F DCLH+GEPGCV+KG+WERY YY 
Sbjct: 301 GFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERYPYYL 360

Query: 420 QLLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILD 479
           QLLDEIRIREEFQLRTFGTKRE DVR KVGDMG + AEPRL  KKHRR+SRKK  Q+++ 
Sbjct: 361 QLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMIS 420

Query: 480 ELDELEDDDDE---ENDPVLRAMRNENQ 504
           ELDE ED+D +   ENDP+++A+ NEN+
Sbjct: 421 ELDEFEDEDSDLYIENDPIVQAIENENK 431

[Close]

BLAST of HG10004340 vs. ExPASy Swiss-Prot
Match: F4HTL8 (Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g67460 PE=2 SV=2)

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-76
Identity = 159/275 (57.82%), Postives = 196/275 (71.27%), Query Frame = 0


Query: 25  FGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNLLRAKHTFKDYSSLAPVLSLQENPP 84
           FG  LR   +F  LS + +Q NP NV+  P P+K +LR        S LAPVL L E P 
Sbjct: 24  FGTGLRIRRSFYFLSAI-RQENP-NVTKNPHPNKTILR--------SFLAPVLPLDEKPN 83

Query: 85  LSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDDSELSGSLEGESSESSRLGVELLCV 144
           L   QAIGT+A A A++MRVIVQ +P                 E ++ E  ++GVELLCV
Sbjct: 84  LVELQAIGTIATALADYMRVIVQDVP-----------------ESDNGEDDKIGVELLCV 143

Query: 145 VKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMD 204
           V+ +LKKI R VLVGDKV+V  +DWVDRR  I NVF R SE+LDPPVANVDHL++LFS+D
Sbjct: 144 VRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKIINVFDRVSEVLDPPVANVDHLVILFSLD 203

Query: 205 QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTR 264
           QPK++PFTLTRFLVEAES GI +T+ LNK ELV +E + SWK RLRSW Y+PLFCSV T+
Sbjct: 204 QPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQEEVESWKIRLRSWNYEPLFCSVGTK 263

Query: 265 TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNN 300
            G+D +A+ LR+QT+VIVGPSGVGKSSLIN LR++
Sbjct: 264 VGIDEIAFNLRNQTSVIVGPSGVGKSSLINILRSS 271

[Close]

BLAST of HG10004340 vs. ExPASy Swiss-Prot
Match: Q8YUA3 (Small ribosomal subunit biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rsgA1 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.3e-69
Identity = 164/400 (41.00%), Postives = 225/400 (56.25%), Query Frame = 0


Query: 86  SNSQAIGTVAAAQANFMRV-IVQSLPSQLSDRPNDDSELSGSLEGESSESSRLGVELLCV 145
           +  Q +GTV A QANF +V + Q +  Q S    ++  L   L         L + LLC 
Sbjct: 5   TTGQLLGTVVAVQANFYKVQLDQEVREQGSRGAGEEVHLDSPL-----PLCPLSL-LLCT 64

Query: 146 VKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMD 205
            +  LKKI ++V+VGD+VVV   DW   RG I +V  R +++  PP+AN D +L++F++ 
Sbjct: 65  RRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVA 124

Query: 206 QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTR 265
            P LEP+ L+RFLV+AE+TG+ + L LNK +LV  E       RL +WGY PLF SV+ +
Sbjct: 125 DPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQ 184

Query: 266 TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNNCAADAVDGDNWFDPILGSKWFEDQ 325
             +D +A  L ++ TV+ GPSGVGKSSLINAL  N                       + 
Sbjct: 185 INIDQIAKYLSNKITVVAGPSGVGKSSLINALIPN----------------------INL 244

Query: 326 RVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKML 385
           RV EVS +  RG+HTTRHV L  L  GG LADTPGFNQP  +  + + L   FPE ++ L
Sbjct: 245 RVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERL 304

Query: 386 LASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR 445
                A C FNDC H  EP C ++G+WERY++Y + L +  I  + QL       E  ++
Sbjct: 305 AI---ASCRFNDCSHRDEPDCAVRGDWERYEHYLEFLAD-AIARQTQLYQ-QADPESTLK 364

Query: 446 IKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDELDELE 485
           +K    G  Q EP+LE KK+RR SR+   Q + D   E E
Sbjct: 365 LKTKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQEEE 370

[Close]

BLAST of HG10004340 vs. ExPASy Swiss-Prot
Match: Q3MG79 (Small ribosomal subunit biogenesis GTPase RsgA OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rsgA PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-68
Identity = 162/400 (40.50%), Postives = 222/400 (55.50%), Query Frame = 0


Query: 86  SNSQAIGTVAAAQANFMRV-IVQSLPSQLSDRPNDDSELSGSLEGESSESSRLGVELLCV 145
           +  Q +GTV A QANF +V + Q +    S    ++  L   L             LLC 
Sbjct: 5   TTGQLLGTVVAVQANFYKVQLDQDVREPGSRGAGEEVHLDSPLPLYPLSL------LLCT 64

Query: 146 VKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMD 205
            +  LKKI ++V+VGD+VVV   DW   RG I  V  R +++  PP+AN D +L++F++ 
Sbjct: 65  RRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFAVA 124

Query: 206 QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTR 265
            P LEP+ L+RFLV+AE+TG+ + L LNK +LV  E       RL +WGY PLF SV+ +
Sbjct: 125 DPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVEKQ 184

Query: 266 TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNNCAADAVDGDNWFDPILGSKWFEDQ 325
             +D +A  L ++ TV+ GPSGVGKSSLINAL  +                       + 
Sbjct: 185 INIDQIAKYLSNKITVVAGPSGVGKSSLINALIPD----------------------INL 244

Query: 326 RVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKML 385
           RV EVS +  RG+HTTRHV L  L  GG LADTPGFNQP  +  + + L   FPE ++ L
Sbjct: 245 RVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERL 304

Query: 386 LASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVR 445
                A C FNDCLH  EP C ++G+WERY++Y + L +  I  + QL       E  ++
Sbjct: 305 AV---ASCRFNDCLHRDEPDCAVRGDWERYEHYLEFLAD-AIARQTQLYQ-QADPESTLK 364

Query: 446 IKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDELDELE 485
           +K    G  Q EP+LE KK+RR SR+   Q + D   E E
Sbjct: 365 LKTKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQEEE 370

[Close]

BLAST of HG10004340 vs. ExPASy Swiss-Prot
Match: B0JW21 (Small ribosomal subunit biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rsgA PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.4e-65
Identity = 150/402 (37.31%), Postives = 224/402 (55.72%), Query Frame = 0


Query: 92  GTVAAAQANFMRVIVQSLPSQLSDRPNDDSELSGSLEGESSESSRLGVELLCVVKAVLKK 151
           GTV A QANF +V +                          +S+ +G  LLC  +A L+K
Sbjct: 11  GTVVAVQANFYQVRL--------------------------DSAVMGENLLCTRRARLQK 70

Query: 152 IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMDQPKLEPF 211
           I + V+VGD+V V   ++ D++G I  V  RS+EI  P VAN++ +L++F++ +P L+P+
Sbjct: 71  IGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQILLVFALAEPVLDPW 130

Query: 212 TLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTRTGLDTLA 271
            ++RFLV+AESTG+ + + +NK++L + E +  W  RL  WGY P F SV+   G + L 
Sbjct: 131 LISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPFFVSVEKNRGFEALL 190

Query: 272 YILRDQTTVIVGPSGVGKSSLINALRNNNCAADAVDGDNWFDPILGSKWFEDQRVAEVST 331
             L  + T++ GPSGVGKSSLI      NC    +                +QRV +VS 
Sbjct: 191 AQLNHKITLLAGPSGVGKSSLI------NCLIPEI----------------NQRVGDVSG 250

Query: 332 RSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAFPEIQKMLLASKPAK 391
           +  +G+HTTRHV L  L   G LAD+PGFNQP +     + L   FPE++  L       
Sbjct: 251 KLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDI-NCLPEELTFYFPEVRARLAL---GN 310

Query: 392 CSFNDCLHLGEPGCVIKGEWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIKVGDMG 451
           C FNDC H  EP CV++G+WERYQ+Y + L+E   RE+   +T  + +E  +++K+ + G
Sbjct: 311 CQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--STKESSLKLKIKEAG 358

Query: 452 AQQAEPRLELKKHRRQSRKKVNQS----ILDELDELEDDDDE 490
            +  EP+L  KK+RR SR+  NQ         L ++ +DD E
Sbjct: 371 QETYEPKLANKKYRRPSRRGKNQDQERYENKTLQDIYNDDSE 358

[Close]

BLAST of HG10004340 vs. ExPASy TrEMBL
Match: A0A0A0KGV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365180 PE=3 SV=1)

HSP 1 Score: 904.0 bits (2335), Expect = 2.7e-259
Identity = 462/504 (91.67%), Postives = 484/504 (96.03%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTAAIA++SSIPVFG+VLRRVFNFRC SIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTAAIAATSSIPVFGNVLRRVFNFRCFSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAPVLS Q+NPPLS SQAIGTVAAAQANFMRVIVQ+LPSQ S  PNDD
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLPSQFSQSPNDD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
            E SGSLE +SS+SS LGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 LERSGSLEDDSSKSSMLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSMDQP+LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           TLVSWKSRLRSWGYDPLFCSVQT  GLD+LA+ILRDQTTVIVGPSGVGKSSLINALRN+N
Sbjct: 241 TLVSWKSRLRSWGYDPLFCSVQTGAGLDSLAFILRDQTTVIVGPSGVGKSSLINALRNSN 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
            A DA D DNWFDPILGSKWFE+QRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF
Sbjct: 301 RATDASDTDNWFDPILGSKWFEEQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKML AS+PAKCSFNDCLHLGEPGCVIKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLHASEPAKCSFNDCLHLGEPGCVIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVG+MG +QAEPRLELKKHRRQSRK+VNQSILDEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGEMGVKQAEPRLELKKHRRQSRKRVNQSILDEL 480

Query: 481 DELEDDDD-EENDPVLRAMRNENQ 504
           DELED+DD EE +P+LRAM+NENQ
Sbjct: 481 DELEDEDDLEETNPILRAMKNENQ 504

[Close]

BLAST of HG10004340 vs. ExPASy TrEMBL
Match: A0A5A7VEI9 (Putative ribosome biogenesis GTPase RsgA 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00400 PE=3 SV=1)

HSP 1 Score: 901.7 bits (2329), Expect = 1.3e-258
Identity = 460/503 (91.45%), Postives = 482/503 (95.83%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTAA+A++SS PVFG+V+RRVF FRC SIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTAALAATSSFPVFGNVIRRVFKFRCFSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAPVLS Q+NPPLS SQAIGTVAAAQANFMRVIVQ+LPSQ S+  NDD
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLPSQFSESSNDD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
            E SGSLE +SSESS LGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 LERSGSLENDSSESSMLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QR SEILDPPVANVDHLLVLFSMDQP+LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRKSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           T+VSWKSRLRSWGYDPLFCSVQT TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTGTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
            AADA+D DNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL+GGGYLADTPGF
Sbjct: 301 RAADALDTDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLTGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKML AS+PAKCSFNDCLHLGEPGC+IKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLRASEPAKCSFNDCLHLGEPGCIIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVG MGAQQAEPRLELKKHRRQSRK+VNQSILDEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGVMGAQQAEPRLELKKHRRQSRKRVNQSILDEL 480

Query: 481 DELEDDDDEENDPVLRAMRNENQ 504
           DE ++DD EE DP+LRAM+NENQ
Sbjct: 481 DE-DEDDLEETDPILRAMKNENQ 502

[Close]

BLAST of HG10004340 vs. ExPASy TrEMBL
Match: A0A1S3BCE1 (putative ribosome biogenesis GTPase RsgA 1 OS=Cucumis melo OX=3656 GN=LOC103488495 PE=3 SV=1)

HSP 1 Score: 901.0 bits (2327), Expect = 2.3e-258
Identity = 460/503 (91.45%), Postives = 482/503 (95.83%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTAA+A++SS PVFG+V+RRVFNFRC SIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTAALAATSSFPVFGNVIRRVFNFRCFSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAPVLS Q+NPPLS SQAIGTVAAAQANFMRVIVQ+LPSQ S+   DD
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLPSQFSESSYDD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
            E SGSLE +SSESS LGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 LERSGSLENDSSESSMLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QR SEILDPPVANVDHLLVLFSMDQP+LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRKSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           T+VSWKSRLRSWGYDPLFCSVQT TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTGTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
            AADA+D DNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL+GGGYLADTPGF
Sbjct: 301 RAADALDTDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLTGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKML AS+PAKCSFNDCLHLGEPGC+IKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLRASEPAKCSFNDCLHLGEPGCIIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVG MGAQQAEPRLELKKHRRQSRK+VNQSILDEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGVMGAQQAEPRLELKKHRRQSRKRVNQSILDEL 480

Query: 481 DELEDDDDEENDPVLRAMRNENQ 504
           DE ++DD EE DP+LRAM+NENQ
Sbjct: 481 DE-DEDDLEETDPILRAMKNENQ 502

[Close]

BLAST of HG10004340 vs. ExPASy TrEMBL
Match: A0A6J1BS55 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005203 PE=3 SV=1)

HSP 1 Score: 897.9 bits (2319), Expect = 1.9e-257
Identity = 458/507 (90.34%), Postives = 485/507 (95.66%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTA  A+++SIP FG+VLRR FN RC S+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTA--AATASIPAFGNVLRRFFNVRCFSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAP LS Q+NPPLS SQAIGTVAAAQANFMRVIVQSLPSQLSD  N D
Sbjct: 61  LRAKHTFKDYSSLAPALSPQDNPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNQD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGSLEG+SSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SEPSGSLEGDSSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSMDQPKLE FTLTRFL+EAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLESFTLTRFLIEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           TLVSWKSRLRSWGY+PLFCSVQT+TGLD+LAYILRDQTTVIVGPSGVGKSSLINALRNN+
Sbjct: 241 TLVSWKSRLRSWGYEPLFCSVQTKTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRNND 300

Query: 301 CAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360
              DAV+GDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF
Sbjct: 301 RGVDAVEGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIQKMLLA++PA+CSFNDCLHLGEPGCVIKG+WERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLLANEPARCSFNDCLHLGEPGCVIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRK+VNQSIL+EL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDDDDEEN----DPVLRAMRNENQ 504
           DELED+D++++    DP+L+AMRNE Q
Sbjct: 481 DELEDEDEDDSLDKEDPILKAMRNEQQ 505

[Close]

BLAST of HG10004340 vs. ExPASy TrEMBL
Match: A0A6J1BSR6 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005203 PE=3 SV=1)

HSP 1 Score: 893.3 bits (2307), Expect = 4.8e-256
Identity = 458/508 (90.16%), Postives = 485/508 (95.47%), Query Frame = 0


Query: 1   MAISSISMLRHHTAAIASSSSIPVFGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAI+SISMLRHHTA  A+++SIP FG+VLRR FN RC S+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTA--AATASIPAFGNVLRRFFNVRCFSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKDYSSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDD 120
           LRAKHTFKDYSSLAP LS Q+NPPLS SQAIGTVAAAQANFMRVIVQSLPSQLSD  N D
Sbjct: 61  LRAKHTFKDYSSLAPALSPQDNPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNQD 120

Query: 121 SELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGSLEG+SSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SEPSGSLEGDSSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSMDQPKLE FTLTRFL+EAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLESFTLTRFLIEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300
           TLVSWKSRLRSWGY+PLFCSVQT+TGLD+LAYILRDQTTVIVGPSGVGKSSLINALRNN+
Sbjct: 241 TLVSWKSRLRSWGYEPLFCSVQTKTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRNND 300

Query: 301 CAADAVDGDNWFDP-ILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPG 360
              DAV+GDNWFDP ILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPG
Sbjct: 301 RGVDAVEGDNWFDPQILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPG 360

Query: 361 FNQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYFQ 420
           FNQPSLMKITKQSLAQAFPEIQKMLLA++PA+CSFNDCLHLGEPGCVIKG+WERYQYYFQ
Sbjct: 361 FNQPSLMKITKQSLAQAFPEIQKMLLANEPARCSFNDCLHLGEPGCVIKGDWERYQYYFQ 420

Query: 421 LLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILDE 480
           LLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRK+VNQSIL+E
Sbjct: 421 LLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNE 480

Query: 481 LDELEDDDDEEN----DPVLRAMRNENQ 504
           LDELED+D++++    DP+L+AMRNE Q
Sbjct: 481 LDELEDEDEDDSLDKEDPILKAMRNEQQ 506

[Close]

BLAST of HG10004340 vs. TAIR 10
Match: AT1G67440.1 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 611.3 bits (1575), Expect = 7.0e-175
Identity = 314/448 (70.09%), Postives = 369/448 (82.37%), Query Frame = 0


Query: 60  LLRAKHTFKDY-SSLAPVLSLQENPPLSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPN 119
           +LRAKH  K+Y SSL+PVLS +  P L  SQAIGTVA AQANFMRVIVQ + + ++   +
Sbjct: 1   MLRAKHIGKNYSSSLSPVLSPEHKPSLLESQAIGTVATAQANFMRVIVQDVANSVT---S 60

Query: 120 DDSELSGSLEGESSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 179
           DD           ++SS+ GVELLCVV+AVLKKI+RRVLVGDKV+VGSIDWVDRRGMIEN
Sbjct: 61  DD----------DNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIEN 120

Query: 180 VFQRSSEILDPPVANVDHLLVLFSMDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVD 239
           VF R SEILDPPVANVDHLLVLFS+DQPKLEPFTLTRFLVEAEST IPLTL LNK EL+ 
Sbjct: 121 VFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELIS 180

Query: 240 EETLVSWKSRLRSWGYDPLFCSVQTRTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRN 299
           EE L +WK RLR W Y+PLFCSV T+ GLD +A++LRDQT+VIVGPSGVGKSSLIN LR+
Sbjct: 181 EEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRS 240

Query: 300 NNCAADAVDGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTP 359
           N+     V+ +NWF+P+LG+KWF+DQRV EVS+RSGRGKHTTR+VSLLP+S GGYLADTP
Sbjct: 241 NH-GGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTP 300

Query: 360 GFNQPSLMKITKQSLAQAFPEIQKMLLASKPAKCSFNDCLHLGEPGCVIKGEWERYQYYF 419
           GFNQPSL+K+TK SLA  FPEI+ M+   +  KC F DCLH+GEPGCV+KG+WERY YY 
Sbjct: 301 GFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERYPYYL 360

Query: 420 QLLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKKVNQSILD 479
           QLLDEIRIREEFQLRTFGTKRE DVR KVGDMG + AEPRL  KKHRR+SRKK  Q+++ 
Sbjct: 361 QLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMIS 420

Query: 480 ELDELEDDDDE---ENDPVLRAMRNENQ 504
           ELDE ED+D +   ENDP+++A+ NEN+
Sbjct: 421 ELDEFEDEDSDLYIENDPIVQAIENENK 431

[Close]

BLAST of HG10004340 vs. TAIR 10
Match: AT1G67460.1 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 288.9 bits (738), Expect = 7.9e-78
Identity = 159/275 (57.82%), Postives = 196/275 (71.27%), Query Frame = 0


Query: 25  FGDVLRRVFNFRCLSIVAKQHNPNNVSNKPPPSKNLLRAKHTFKDYSSLAPVLSLQENPP 84
           FG  LR   +F  LS + +Q NP NV+  P P+K +LR        S LAPVL L E P 
Sbjct: 24  FGTGLRIRRSFYFLSAI-RQENP-NVTKNPHPNKTILR--------SFLAPVLPLDEKPN 83

Query: 85  LSNSQAIGTVAAAQANFMRVIVQSLPSQLSDRPNDDSELSGSLEGESSESSRLGVELLCV 144
           L   QAIGT+A A A++MRVIVQ +P                 E ++ E  ++GVELLCV
Sbjct: 84  LVELQAIGTIATALADYMRVIVQDVP-----------------ESDNGEDDKIGVELLCV 143

Query: 145 VKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSMD 204
           V+ +LKKI R VLVGDKV+V  +DWVDRR  I NVF R SE+LDPPVANVDHL++LFS+D
Sbjct: 144 VRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKIINVFDRVSEVLDPPVANVDHLVILFSLD 203

Query: 205 QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPLFCSVQTR 264
           QPK++PFTLTRFLVEAES GI +T+ LNK ELV +E + SWK RLRSW Y+PLFCSV T+
Sbjct: 204 QPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQEEVESWKIRLRSWNYEPLFCSVGTK 263

Query: 265 TGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNN 300
            G+D +A+ LR+QT+VIVGPSGVGKSSLIN LR++
Sbjct: 264 VGIDEIAFNLRNQTSVIVGPSGVGKSSLINILRSS 271

The following BLAST results are available for this feature:

BLAST of HG10004340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885175.1	3.9e-260	92.96	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Benincasa hispi...	[more]
XP_004144195.1	5.6e-259	91.67	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Cucumis sativus...	[more]
KAA0064736.1	2.8e-258	91.45	putative ribosome biogenesis GTPase RsgA 1 [Cucumis melo var. makuwa]	[more]
XP_008445496.1	4.7e-258	91.45	PREDICTED: putative ribosome biogenesis GTPase RsgA 1 [Cucumis melo]	[more]
XP_022132325.1	4.0e-257	90.34	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 [Momo...	[more]

BLAST of HG10004340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4V399	9.8e-174	70.09	Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Arabidopsis t...	[more]
F4HTL8	1.1e-76	57.82	Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial OS=Arabidopsis t...	[more]
Q8YUA3	2.3e-69	41.00	Small ribosomal subunit biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 ...	[more]
Q3MG79	1.5e-68	40.50	Small ribosomal subunit biogenesis GTPase RsgA OS=Trichormus variabilis (strain ...	[more]
B0JW21	4.4e-65	37.31	Small ribosomal subunit biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain...	[more]

BLAST of HG10004340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGV4	2.7e-259	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365180 PE=3 SV=1	[more]
A0A5A7VEI9	1.3e-258	91.45	Putative ribosome biogenesis GTPase RsgA 1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BCE1	2.3e-258	91.45	putative ribosome biogenesis GTPase RsgA 1 OS=Cucumis melo OX=3656 GN=LOC1034884...	[more]
A0A6J1BS55	1.9e-257	90.34	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 OS=Mo...	[more]
A0A6J1BSR6	4.8e-256	90.16	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X1 OS=Mo...	[more]

BLAST of HG10004340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67440.1	7.0e-175	70.09	Minichromosome maintenance (MCM2/3/5) family protein	[more]
AT1G67460.1	7.9e-78	57.82	Minichromosome maintenance (MCM2/3/5) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 178..365 e-value: 2.2E-48 score: 166.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 186..421
None	No IPR available	GENE3D	1.10.40.50	Probable gtpase engc; domain 3	coord: 367..429 e-value: 1.5E-13 score: 52.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 456..503
None	No IPR available	PANTHER	PTHR32120:SF11	SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED	coord: 79..488
IPR004881	Ribosome biogenesis GTPase RsgA	TIGRFAM	TIGR00157	TIGR00157	coord: 156..298 e-value: 1.3E-34 score: 117.8
IPR004881	Ribosome biogenesis GTPase RsgA	PANTHER	PTHR32120	SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA	coord: 79..488
IPR004881	Ribosome biogenesis GTPase RsgA	HAMAP	MF_01820	GTPase_RsgA	coord: 90..428 score: 29.780931
IPR004881	Ribosome biogenesis GTPase RsgA	CDD	cd01854	YjeQ_EngC	coord: 192..422 e-value: 4.99376E-82 score: 251.548
IPR010914	RsgA GTPase domain	PFAM	PF03193	RsgA_GTPase	coord: 179..365 e-value: 3.7E-57 score: 192.9
IPR010914	RsgA GTPase domain	PROSITE	PS50936	ENGC_GTPASE	coord: 192..361 score: 40.562042
IPR030378	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	PROSITE	PS51721	G_CP	coord: 183..363 score: 48.703079
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 136..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004340.1	HG10004340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding