HG10004283 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004283
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	Chr08: 15547365 .. 15548020 (-)
RNA-Seq Expression	HG10004283
Synteny	HG10004283

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCTCTCAATTCCGTTTCTCAATTCCTTGTTCGATTCGTTTGTAGCTGTGTTAAATCCTCCATTCTCCACCGTCGCCCTTCCTCCCTTGAGGCAAAGAAGAGAAGGTCTCGGGGTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGAGTGGGCTTCCGTCTCCTTCTTCTCTTCTACCTCCAATATTACATCCTCCAGGTATCTTTCTTCTTCTTTCTTATATTTTGTTCTTCAGATTCTCAATTTTAGGGTATTCCTTGTCTTTTCTTTTCAATTGGGTCGGTTTTGATCGATGCCTTTCTCTTCTTTACATGCTCAATTACACGGTTCGGATCATTTGTAGATGTTTATAGATTGTGTCCCCAATTTGTGTGAATCCATTCTGTTTGTTTTAGGTCATTAAACTTTGAAATTCGTTAAGATCGCTTTCCGAATGTTGATTTCTTTTATTCTAGGCAGTAATGTTTAATCCAGAAGGGGAATAATAGTGTTCTTGTGGATTTTGCTACTTGAAACAGAATTCTCTTAAACAAATGTCTGGATGCATCATGTCATCCTCTGGGTTTCAAGATTTTTGCTTTGTCGGATGATGTGCTTTTCTTATTGTTGAATTGA

mRNA sequence

ATGCTCTCTCTCAATTCCGTTTCTCAATTCCTTGTTCGATTCGTTTGTAGCTGTGTTAAATCCTCCATTCTCCACCGTCGCCCTTCCTCCCTTGAGGCAAAGAAGAGAAGGTCTCGGGGTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGAGTGGGCTTCCGTCTCCTTCTTCTCTTCTACCTCCAATATTACATCCTCCAGAATTCTCTTAAACAAATGTCTGGATGCATCATGTCATCCTCTGGGTTTCAAGATTTTTGCTTTGTCGGATGATGTGCTTTTCTTATTGTTGAATTGA

Coding sequence (CDS)

ATGCTCTCTCTCAATTCCGTTTCTCAATTCCTTGTTCGATTCGTTTGTAGCTGTGTTAAATCCTCCATTCTCCACCGTCGCCCTTCCTCCCTTGAGGCAAAGAAGAGAAGGTCTCGGGGTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGAGTGGGCTTCCGTCTCCTTCTTCTCTTCTACCTCCAATATTACATCCTCCAGAATTCTCTTAAACAAATGTCTGGATGCATCATGTCATCCTCTGGGTTTCAAGATTTTTGCTTTGTCGGATGATGTGCTTTTCTTATTGTTGAATTGA

Protein sequence

MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRILLNKCLDASCHPLGFKIFALSDDVLFLLLN

Homology

[Close]

BLAST of HG10004283 vs. NCBI nr
Match: XP_038884232.1 (uncharacterized protein LOC120075129 [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRS 60
          MLSLNS+SQFLVRFVC CVKSSILH RPSSLEAKKR+SRGSAMITRSNLVEQLREYQIRS
Sbjct: 1  MLSLNSISQFLVRFVCRCVKSSILHPRPSSLEAKKRKSRGSAMITRSNLVEQLREYQIRS 60

Query: 61 KHEWASVSFFSSTSNITSSRI 82
          KHEWASVSFFSSTSNITSSR+
Sbjct: 61 KHEWASVSFFSSTSNITSSRV 81

[Close]

BLAST of HG10004283 vs. NCBI nr
Match: XP_008464874.1 (PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQI 60
          MLSLNS+SQFLVRF+C C +SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHEWASVSFFSSTSNITSSRI 82
          RSKHEWASVSFFSSTSNITSSR+
Sbjct: 61 RSKHEWASVSFFSSTSNITSSRV 83

[Close]

BLAST of HG10004283 vs. NCBI nr
Match: XP_008464875.1 (PREDICTED: uncharacterized protein LOC103502637 isoform X2 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 73/88 (82.95%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQI 60
          MLSLNS+SQFLVRF+C C +SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHEWASVSFFSSTSNITSSRILLNKC 87
          RSKHEWASVSFFSSTSNITSSR     C
Sbjct: 61 RSKHEWASVSFFSSTSNITSSRFKRMSC 88

[Close]

BLAST of HG10004283 vs. NCBI nr
Match: XP_004144225.1 (uncharacterized protein LOC101213289 [Cucumis sativus] >KGN47556.1 hypothetical protein Csa_018918 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQI 60
          MLSLNS+SQFLV F+C C  SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHEWASVSFFSSTSNITSSRI 82
          RSKHEWASVSFFSSTSNITSSR+
Sbjct: 61 RSKHEWASVSFFSSTSNITSSRV 83

[Close]

BLAST of HG10004283 vs. NCBI nr
Match: XP_022951473.1 (uncharacterized protein LOC111454282 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 2  LSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSK 61
          LSLNS+SQFL+ FV  C KSS LHRRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSK
Sbjct: 20 LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSK 79

Query: 62 HEWASVSFFSSTSNITSSRI 82
          HEWASVS FSS SNITSSR+
Sbjct: 80 HEWASVSLFSSASNITSSRV 99

[Close]

BLAST of HG10004283 vs. ExPASy TrEMBL
Match: A0A1S3CMK7 (uncharacterized protein LOC103502637 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502637 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQI 60
          MLSLNS+SQFLVRF+C C +SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHEWASVSFFSSTSNITSSRI 82
          RSKHEWASVSFFSSTSNITSSR+
Sbjct: 61 RSKHEWASVSFFSSTSNITSSRV 83

[Close]

BLAST of HG10004283 vs. ExPASy TrEMBL
Match: A0A1S3CN04 (uncharacterized protein LOC103502637 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502637 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 73/88 (82.95%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQI 60
          MLSLNS+SQFLVRF+C C +SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHEWASVSFFSSTSNITSSRILLNKC 87
          RSKHEWASVSFFSSTSNITSSR     C
Sbjct: 61 RSKHEWASVSFFSSTSNITSSRFKRMSC 88

[Close]

BLAST of HG10004283 vs. ExPASy TrEMBL
Match: A0A0A0KIH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358690 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQI 60
          MLSLNS+SQFLV F+C C  SSILH   SSLEAKKRRSRG  SAMITRSNLVEQLREYQI
Sbjct: 1  MLSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQI 60

Query: 61 RSKHEWASVSFFSSTSNITSSRI 82
          RSKHEWASVSFFSSTSNITSSR+
Sbjct: 61 RSKHEWASVSFFSSTSNITSSRV 83

[Close]

BLAST of HG10004283 vs. ExPASy TrEMBL
Match: A0A6J1GHS6 (uncharacterized protein LOC111454282 OS=Cucurbita moschata OX=3662 GN=LOC111454282 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.6e-25
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 2  LSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSK 61
          LSLNS+SQFL+ FV  C KSS LHRRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSK
Sbjct: 20 LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSK 79

Query: 62 HEWASVSFFSSTSNITSSRI 82
          HEWASVS FSS SNITSSR+
Sbjct: 80 HEWASVSLFSSASNITSSRV 99

[Close]

BLAST of HG10004283 vs. ExPASy TrEMBL
Match: A0A6J1G568 (uncharacterized protein LOC111450786 OS=Cucurbita moschata OX=3662 GN=LOC111450786 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MLSLNSVSQFLVRFVCSCVKSSILHRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRS 60
          MLSLNS+SQFLV F+C CVK  ILHRRPS    +K  SRG+AMITRSNLVEQLREYQIRS
Sbjct: 1  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRGAAMITRSNLVEQLREYQIRS 60

Query: 61 KHEWASVSFFSSTSNITSSRI 82
          KH+WAS SFFSSTSNITSSR+
Sbjct: 61 KHDWASASFFSSTSNITSSRV 77

[Close]

BLAST of HG10004283 vs. TAIR 10
Match: AT1G76185.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20460.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 43 MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRI 82
          MITRSNL EQLREYQIRSKH+WASVSFFSSTSN +SSR+
Sbjct: 1  MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRV 39

[Close]

BLAST of HG10004283 vs. TAIR 10
Match: AT1G20460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 43 MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRI 82
          MITRSNL EQLREYQIRSKH+WASVSFFSSTSN +SSR+
Sbjct: 1  MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRV 39

The following BLAST results are available for this feature:

BLAST of HG10004283 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884232.1	2.0e-31	93.83	uncharacterized protein LOC120075129 [Benincasa hispida]	[more]
XP_008464874.1	2.9e-27	86.75	PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo]	[more]
XP_008464875.1	2.9e-27	82.95	PREDICTED: uncharacterized protein LOC103502637 isoform X2 [Cucumis melo]	[more]
XP_004144225.1	3.2e-26	85.54	uncharacterized protein LOC101213289 [Cucumis sativus] >KGN47556.1 hypothetical ...	[more]
XP_022951473.1	1.4e-24	81.25	uncharacterized protein LOC111454282 [Cucurbita moschata]	[more]

BLAST of HG10004283 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004283 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CMK7	1.4e-27	86.75	uncharacterized protein LOC103502637 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CN04	1.4e-27	82.95	uncharacterized protein LOC103502637 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KIH9	1.6e-26	85.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358690 PE=4 SV=1	[more]
A0A6J1GHS6	6.6e-25	81.25	uncharacterized protein LOC111454282 OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]
A0A6J1G568	5.6e-24	79.01	uncharacterized protein LOC111450786 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]

BLAST of HG10004283 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76185.1	7.5e-13	87.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G20460.1	7.5e-13	87.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34936	EXPRESSED PROTEIN	coord: 43..81
None	No IPR available	PANTHER	PTHR34936:SF7	PROTEIN, PUTATIVE-RELATED	coord: 43..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004283.1	HG10004283.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane