HG10004247 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004247
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein 24-A
Location	Chr08: 15206715 .. 15209974 (+)
RNA-Seq Expression	HG10004247
Synteny	HG10004247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGAGTATTAATGGTTTTTACTTTAATGGGTTTTTGTTAACTTTATACTTTTATTTCTACTTTCTAAAAGTAATAGCCTAAGAACATTCGTTTGGACACTTTTTTTTTTCCCTAGCAAGCTAGTCGTATCTAATTGTTTGATCATTAATATCTATATTGTTGACATTTGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGGGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGTATTATTTGCTTATTTGGTCATTTATTGCTTAGCAAATCGTATTGTTAGTTCCTGTCGTGTGTATTTGTATGATCGGGGATTTTTCCTGGTACATGCATTTTGTTCAAAGGAATTAATGGTCACAAATTCCTGTTTTGACTTTCGAGTCTTTGGAAGCTCTGGATTGATCAGTCTTTACTTCTATACTGCTGTTTCTTACAGGACGTTTGAGACAGCCTGCAGTATATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGGCTTGCATATCCCCCTTATGGGTATGTCCCCGAGGTTTCTCTTTATGCGTCCAAGCCTGCCGATACATTCTAATTTTATTATTTTGTTTAACTCTGATCTCTTGCGTTTTCCATTGCTATATCACGACCCTTACATTTTGTAGTATGACTCTGTGGTGCTTGGTTTGCTTTCAAAAATTCAACATTATGAGATTTAATTTATTTTTCTTCTCTGTTTGTCATCAAGTTTTATAGTAAATGAACGATATTGTCAAGTAATCTTTAGATGTAAATATATGCTTTCAGGTTGATTTCATTTTAAGTATTACTACCTTGCTTTTTATTTTTTTATTTTTTTATTGCACCTTATATCCTAGTTTTCATTGTTTCTTAAGAAGGTTGATAGACACCATTTGGTTGGTATTCATTCTCTGCACTGCCCTCTTAATGTTAGTATTTATCTTTAAAGTCACAAGAGGTATATTACCAATCACTACATGCAACATTCCTTAGGATGTGTATCTTTGTCACCTCCTAGAACTCAGGATTGATACCTGATCAGTGATGTGACACAGTGTGATTGGTAATTGCAGGAATACCATAGAAGTTTTTTGAGGATATGTTCCAAGACTAATGTAATTGAACGGCAAGAAGCATGGCTAGTATTATTGGAGAAGTTTCATATCTTGTTTTCACTTGCATTTTATAGTTTATATTAAAAGTCAAGTTGGTAGGATTCGTCAACTCTGGTCTCTAGTTAATTGGGATACCAAATATTTGTCTCCGGTATTACAATGGACTGTGGGTTATAAAATGATTTCCTCCTGTTAAGTTTGCATTGTTTCGGTTTATTCTACTATCTAAATTTCTGCTTTCATAATCTTATCTCTTGGAAATATTTAAAGTATTTTCAATCATTCGTTTTCTATGCAGTTATGCTACCTATGGACCTGAGTATGTCTACCCACAGGTATCACTATTGCTATATTTACTTATATCTGCAATTTTGTATTTGGAACTTTGGAGGGTGGAAGTAGGGAAGGGTGATATGATGGGTATCATTAAAAGTTTCTCAAGGTTTTTGATAGTTCTAGCATAATATGCTCAGTGGTTTTGATTTTCTGTCTTGTATCCTTTGCCTAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCAAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGGTATGGAGCAGTACATGGATATGCAATGCCAAATCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTCAATACATTAACATCTTCTCCAATGCCTACTATTCAGGCGCCGTATCCTTCAGGTACTTTGCTTTGTATGCAGATTACTCTTGATTACAACATTGAGCAATTTGAGTTTTGGCTAGTCTCTTTAGGTATTTTTCTTTGAGTTTTTTATTTTATTATCATCAATGGGATCTCTTTTGTGTATTGGTGTTATCTTTTTTAGTTTCTCCGCTGGTTTGGTCCTTTGGTCTTTTTCTCGAGGTCATTTCCTTCTTTCATTAATCTTTCGGAAGTGACCATCATGATCCTACTGAAAAACAAGAGGGCATGACCTTGATAAAGGGCTAAGAGGTCATGGGTTCAATCCATGGTGACCACCTACTTAAGATTTAATATCCTACGGGTTTCCTTGACACCCAAATATTGTAGGTTCAAGCGGGTTTCCCGTGAGATTAGTCAAGGTGTGTGTAAGCTGGCTCAGAAACTCACATATAGCAAAAAATATAAATAAAATTTTTTTTTGGTGAACTCGTGTTCAATCATTGTGTTGGCTTAGTTATGTGTTGAATAAATTTTTTGATAGTACTCTGAAGGGTCAAATTTTTTTCTCTGCTTTGAAATGGCACCATCCAGTAAAGATAGTGGACTCAAGACTGGATATCTTCTGGGGACAGTAAAGATTTGTTTTTGCTTTTTTTTTTTTTTGTTTTGTTTTTGCTGTGAAAACTTATTTCATTGAAGAGGAATGAAAGTGCAACAGAAGGGGAGACCATTCATGGGGTTATTGAAATTCATAGCTGAAGAACAACTGGACAAGGATCCATGGGGGCAAGTGATGAGAAAAAGTTTGTTTACTATAGAATAAAGGAGATATAATGTATTGAGATATCTTTGTTGCTTAATACAATGTAGGCCACATTTCTGTTTGTTTTACATGAAACTAAATTAATATGGTTTGACATGTGAAGACATGCTTGATTAAGAAAACGTGTTTGTTTCATCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCATTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

mRNA sequence

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGGGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTGAGACAGCCTGCAGTATATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGGCTTGCATATCCCCCTTATGGTTATGCTACCTATGGACCTGAGTATGTCTACCCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCAAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGGTATGGAGCAGTACATGGATATGCAATGCCAAATCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTCAATACATTAACATCTTCTCCAATGCCTACTATTCAGGCGCCGTATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCATTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

Coding sequence (CDS)

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGGGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTGAGACAGCCTGCAGTATATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGGCTTGCATATCCCCCTTATGGTTATGCTACCTATGGACCTGAGTATGTCTACCCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCAAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGGTATGGAGCAGTACATGGATATGCAATGCCAAATCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTCAATACATTAACATCTTCTCCAATGCCTACTATTCAGGCGCCGTATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCATTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

Protein sequence

MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG

Homology

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BLAST of HG10004247 vs. NCBI nr
Match: XP_004146763.1 (RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_003949 [Cucumis sativus])

HSP 1 Score: 568.5 bits (1464), Expect = 3.1e-158
Identity = 278/286 (97.20%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNT 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMP+PQI+QFSGPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

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BLAST of HG10004247 vs. NCBI nr
Match: XP_008464801.1 (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 567.8 bits (1462), Expect = 5.4e-158
Identity = 278/286 (97.20%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNT 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMP+PQI+QFSGPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

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BLAST of HG10004247 vs. NCBI nr
Match: KAA0045404.1 (RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding protein 24-A [Cucumis melo var. makuwa])

HSP 1 Score: 567.8 bits (1462), Expect = 5.4e-158
Identity = 278/286 (97.20%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNT 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMP+PQI+QFSGPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of HG10004247 vs. NCBI nr
Match: XP_022946505.1 (RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protein 24-A [Cucurbita moschata])

HSP 1 Score: 561.6 bits (1446), Expect = 3.8e-156
Identity = 275/284 (96.83%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLT 240
           VGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMP+PQIVQF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGS SDQTSG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of HG10004247 vs. NCBI nr
Match: KAG6599081.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 561.6 bits (1446), Expect = 3.8e-156
Identity = 275/284 (96.83%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLT 240
           VGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMP+PQIVQF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGS SDQTSG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of HG10004247 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.7e-29
Identity = 109/286 (38.11%), Postives = 136/286 (47.55%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQ-PNR 136
           FVTF+D ++A RAC D TPII+GRRANCNLASLG        GRLR+        Q P  
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG--------GRLRKSPTMTSPQQGPKN 121

Query: 137 G-----AYIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNPFVGQQ 196
           G      ++GN   +  P  +  QQ       A P YGY +    YV P   +N  VG  
Sbjct: 122 GNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPS---AYVAPNMTFNQKVGY- 181

Query: 197 YLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIV---QFSGPNVNTLTS 256
                 V G+     Y  G   Q  P           + P PQ      + G  V    +
Sbjct: 182 ------VGGT-----YMNGYYAQMQP--------QPQSQPQPQYYHHHMYGGGRVMVGAA 241

Query: 257 SPMPTIQAPYP------SGIPAPVAAQPQFIVHSPSQFVQGSGSDQ 282
           SPM      YP       G P P  ++P      P     G  S Q
Sbjct: 242 SPMVPFYTVYPYHQSQAIGFPQPSFSKPLSFSTPPISGTVGGESIQ 256

[Close]

BLAST of HG10004247 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.4e-29
Identity = 83/201 (41.29%), Postives = 102/201 (50.75%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQIHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQ 207
             Y Y Q    P        P        Y  +    Y Q      +A+   Y Y     
Sbjct: 127 AHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA---- 186

Query: 208 TVPGGHGY--GAVHGYAMPNP 227
             P   GY   A +GYA+P P
Sbjct: 187 ASPAATGYVTAAGYGYAVPQP 195

[Close]

BLAST of HG10004247 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.1e-28
Identity = 86/212 (40.57%), Postives = 105/212 (49.53%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPNPQIVQFSGP 235
           Q      P   GY    GY     Q +  + P
Sbjct: 187 QYPYAASPAAAGYVTAGGYGYAVQQPITAAAP 206

[Close]

BLAST of HG10004247 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.1e-28
Identity = 85/212 (40.09%), Postives = 106/212 (50.00%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPNPQIVQFSGP 235
           Q      P   GY    GY+    Q +  + P
Sbjct: 187 QYPYAASPAAAGYVTTGGYSYAVQQPITAAAP 206

[Close]

BLAST of HG10004247 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 84/206 (40.78%), Postives = 106/206 (51.46%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFG---- 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       +G    
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQIHPALVQRPYGIPAH 126

Query: 148 YQQPVSYAYQQGLAYP---PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIY 207
           Y  P +Y  QQGL  P       A+  P   Y    Y  +           P +ASP   
Sbjct: 127 YVYPQAYV-QQGLVIPHVQQTAAASTSPYIDYTSAAYAQYAAAAAAAYDQYPYAASP--- 186

Query: 208 HYGQLGQTVPGGHGYGAVHGYAMPNP 227
                      G+   A +GYA+P P
Sbjct: 187 --------ATTGYVTAAGYGYAVPQP 194

[Close]

BLAST of HG10004247 vs. ExPASy TrEMBL
Match: A0A5D3CHF9 (RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00070 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 2.6e-158
Identity = 278/286 (97.20%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNT 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMP+PQI+QFSGPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of HG10004247 vs. ExPASy TrEMBL
Match: A0A1S3CME8 (RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 2.6e-158
Identity = 278/286 (97.20%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNT 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMP+PQI+QFSGPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of HG10004247 vs. ExPASy TrEMBL
Match: A0A6J1G3W1 (RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 1.9e-156
Identity = 275/284 (96.83%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLT 240
           VGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMP+PQIVQF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGS SDQTSG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of HG10004247 vs. ExPASy TrEMBL
Match: A0A6J1KGG8 (RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.0e-154
Identity = 271/284 (95.42%), Postives = 274/284 (96.48%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKN+GRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLT 240
           VGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGY MP+PQI+QF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGS SDQTSG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of HG10004247 vs. ExPASy TrEMBL
Match: A0A0A0KHA9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.5e-153
Identity = 269/277 (97.11%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNT 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMP+PQI+QFSGPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQ 276
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]

BLAST of HG10004247 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 377.5 bits (968), Expect = 9.6e-105
Identity = 191/292 (65.41%), Postives = 225/292 (77.05%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ  PG        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILE
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPP+ Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY- 180
                GRLR  + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQF 240
             QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   I+Q 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 SGPNVNTLTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTS 284
            GP V+T+T+S MP +QAPYPSGIP P   Q   IVHSP QF+Q + SDQT+
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSP-QFMQSTASDQTT 282

[Close]

BLAST of HG10004247 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-89
Identity = 173/281 (61.57%), Postives = 207/281 (73.67%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-------GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           M  IQ+PYPS  P+    Q + IV +P Q++Q SGSDQT+G
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]

BLAST of HG10004247 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-89
Identity = 173/281 (61.57%), Postives = 207/281 (73.67%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-------GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSGSDQTSG 285
           M  IQ+PYPS  P+    Q + IV +P Q++Q SGSDQT+G
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]

BLAST of HG10004247 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.7 bits (478), Expect = 6.3e-48
Identity = 127/278 (45.68%), Postives = 162/278 (58.27%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--PISYGRLRQPAVYVGGMQPN 136
           FVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP  P   G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYGV 196
                   G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 PGSASPTI-------YHYGQLGQTVPG-GHGYGAVHGYAMPNPQIVQFSGPNVNTLTSSP 256
            G+ SP+        Y+Y Q     P   H     + +     Q  Q   P+ ++    P
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

Query: 257 MPTIQAPYPSGIP---APVAAQPQFIVHSPSQFVQGSG 279
              ++AP PS +P    P+++  +   H+P Q  +  G
Sbjct: 242 -SNVEAPTPSNVPTSQGPLSSSTE--SHAPQQVSEEGG 269

[Close]

BLAST of HG10004247 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 183.3 bits (464), Expect = 2.6e-46
Identity = 123/252 (48.81%), Postives = 147/252 (58.33%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--PPISYGRLRQPAVYVGGMQPN 136
           FVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPR  PP   G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
              Y    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YG----VPGSASPTI----YHYGQLGQT--VPGGHGYGAVHGYAMPNPQIVQFSGPN--V 249
           YG     P S+  TI    Y+YG   Q   VP  H +     Y        +FS P+  V
Sbjct: 182 YGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLV 241

The following BLAST results are available for this feature:

BLAST of HG10004247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146763.1	3.1e-158	97.20	RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_...	[more]
XP_008464801.1	5.4e-158	97.20	PREDICTED: RNA-binding protein 24-A [Cucumis melo]	[more]
KAA0045404.1	5.4e-158	97.20	RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding prot...	[more]
XP_022946505.1	3.8e-156	96.83	RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protei...	[more]
KAG6599081.1	3.8e-156	96.83	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10004247 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	3.7e-29	38.11	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	6.4e-29	41.29	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9BX46	4.1e-28	40.57	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
D3Z4I3	7.1e-28	40.09	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q9I8B3	1.6e-27	40.78	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]

BLAST of HG10004247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHF9	2.6e-158	97.20	RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CME8	2.6e-158	97.20	RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1	[more]
A0A6J1G3W1	1.9e-156	96.83	RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1	[more]
A0A6J1KGG8	1.0e-154	95.42	RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1	[more]
A0A0A0KHA9	1.5e-153	97.11	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV...	[more]

BLAST of HG10004247 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76460.1	9.6e-105	65.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.5e-89	61.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.5e-89	61.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	6.3e-48	45.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	2.6e-46	48.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..105 e-value: 1.8E-24 score: 97.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..90 e-value: 2.3E-17 score: 62.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 32..109 score: 17.114126
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..122 e-value: 1.8E-25 score: 91.4
None	No IPR available	PANTHER	PTHR11176:SF32	RNA-BINDING PROTEIN 38-LIKE ISOFORM X1	coord: 1..280
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 32..107 e-value: 2.33452E-46 score: 148.532
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..280
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004247.1	HG10004247.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding