HG10004047 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004047
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	NAC domain-containing protein
Location	Chr08: 13152795 .. 13153283 (-)
RNA-Seq Expression	HG10004047
Synteny	HG10004047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCTTGGCAAATTTGGAATTTCTATAAAGGTGTTGATGGCCAAGACCTATATTTCTTTACAAAGCTCAAAAGGTCCACCAATAATTCTGGACATTTATCTGCCCATATCAATCGCAAGATTGGCTTGGCCAGCGGTACATGGAGTGGCGAGAACTCAGTCACCCCGATATCTGGTACCAAGGTCCCAATAATTGGCTACTGCAGGCGATTAAGGTATTAATTAATATGCTTTTCTTTCCATCATTTGTTAATTTTCTCCTTATTTTTTAATACATATATATAGAAGTAATAATTTGTACTATTTGATACTTTTAGGTATGAGAATCCTCAATTGTCAGAACATCATGGTGAATGGATCATGCATGAATACAGTTTGCATGAGAGTGTGATCATACATGGCTATTCAGATTCAAACTACGTGTTGTGTCGAATTAGAAAGAATGAAAGAGCCAAAAGAAAAGCAGAGAAAATATGTAATATTTAA

mRNA sequence

ATGGAGCCTTGGCAAATTTGGAATTTCTATAAAGGTGTTGATGGCCAAGACCTATATTTCTTTACAAAGCTCAAAAGGTCCACCAATAATTCTGGACATTTATCTGCCCATATCAATCGCAAGATTGGCTTGGCCAGCGGTACATGGAGTGGCGAGAACTCAGTCACCCCGATATCTGGTACCAAGGTCCCAATAATTGGCTACTGCAGGCGATTAAGGTATGAGAATCCTCAATTGTCAGAACATCATGGTGAATGGATCATGCATGAATACAGTTTGCATGAGAGTGTGATCATACATGGCTATTCAGATTCAAACTACGTGTTGTGTCGAATTAGAAAGAATGAAAGAGCCAAAAGAAAAGCAGAGAAAATATGTAATATTTAA

Coding sequence (CDS)

ATGGAGCCTTGGCAAATTTGGAATTTCTATAAAGGTGTTGATGGCCAAGACCTATATTTCTTTACAAAGCTCAAAAGGTCCACCAATAATTCTGGACATTTATCTGCCCATATCAATCGCAAGATTGGCTTGGCCAGCGGTACATGGAGTGGCGAGAACTCAGTCACCCCGATATCTGGTACCAAGGTCCCAATAATTGGCTACTGCAGGCGATTAAGGTATGAGAATCCTCAATTGTCAGAACATCATGGTGAATGGATCATGCATGAATACAGTTTGCATGAGAGTGTGATCATACATGGCTATTCAGATTCAAACTACGTGTTGTGTCGAATTAGAAAGAATGAAAGAGCCAAAAGAAAAGCAGAGAAAATATGTAATATTTAA

Protein sequence

MEPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISGTKVPIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERAKRKAEKICNI

Homology

[Close]

BLAST of HG10004047 vs. NCBI nr
Match: XP_038877574.1 (NAC domain-containing protein 96-like [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 3.0e-52
Identity = 102/128 (79.69%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 1   MEPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISG 60
           +EPW+IWN Y GVDGQDLYFFTKLKRS N+SG LS H+NRKIGLA GT  GE S TPISG
Sbjct: 53  LEPWKIWNSYGGVDGQDLYFFTKLKRSINSSGQLSVHVNRKIGLAGGTGRGEKSTTPISG 112

Query: 61  TKVPIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERAKR 120
           + VPIIGYCRRLRYEN QL EHHGEWIMHEYSLHESVI  GYSD  YVLCRIRKNE  KR
Sbjct: 113 SNVPIIGYCRRLRYENSQLLEHHGEWIMHEYSLHESVITCGYSDPKYVLCRIRKNEGPKR 172

Query: 121 KAEKICNI 129
           KA  ICNI
Sbjct: 173 KALGICNI 180

[Close]

BLAST of HG10004047 vs. NCBI nr
Match: XP_023511534.1 (NAC domain-containing protein 72-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 90/126 (71.43%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MEPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISG 60
           MEPW+IW  + G+DG+DLYFFTKLKRSTNNSG LSAHINRK+GLA+GTWSGENS +PI  
Sbjct: 49  MEPWEIWLRFGGIDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFA 108

Query: 61  TKV--PIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERA 120
           TK    IIGYC+R RYEN QL EHHGEWIMHEYSLH+  I     DS+YVLCR +KNER 
Sbjct: 109 TKTDKTIIGYCKRFRYENVQLPEHHGEWIMHEYSLHQDSIQQAV-DSDYVLCRFKKNERL 168

Query: 121 KRKAEK 125
           KRK +K
Sbjct: 169 KRKLQK 173

[Close]

BLAST of HG10004047 vs. NCBI nr
Match: KAG6571625.1 (NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-44
Identity = 90/126 (71.43%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MEPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISG 60
           +EPW+IW  + G DG+DLYFFTKLKRSTNNSG LSAHINRK+GLA+GTWSGENS +PI  
Sbjct: 49  IEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFA 108

Query: 61  TKV--PIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERA 120
           TK    IIGYC+R RYEN QL EHHGEWIMHEYSLH+  I     DSNYVLCR +KNER 
Sbjct: 109 TKTDKTIIGYCKRFRYENVQLPEHHGEWIMHEYSLHQDSIQQAV-DSNYVLCRFKKNERL 168

Query: 121 KRKAEK 125
           KRK +K
Sbjct: 169 KRKLQK 173

[Close]

BLAST of HG10004047 vs. NCBI nr
Match: KAG6571617.1 (NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-44
Identity = 90/126 (71.43%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MEPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISG 60
           MEPW+IW  + G DG+DLYFFTKLKRSTNNSG LSAHINRK+GLA+GTWSGENS +PI  
Sbjct: 49  MEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFA 108

Query: 61  TKV--PIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERA 120
           TK    IIGYC+R RYEN QL EHHGEWIMHEYSLH++ I     DS+YVLCR +KNER 
Sbjct: 109 TKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQNSIQQAV-DSDYVLCRFKKNERF 168

Query: 121 KRKAEK 125
           KRK +K
Sbjct: 169 KRKLQK 173

[Close]

BLAST of HG10004047 vs. NCBI nr
Match: XP_022963781.1 (NAC domain-containing protein 30-like [Cucurbita moschata])

HSP 1 Score: 188.0 bits (476), Expect = 5.2e-44
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MEPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISG 60
           MEPW+IW  + G DG+DLYFFTKLKRSTNNSG LSAHINRK+GLA+GTWSGENS + I  
Sbjct: 49  MEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFA 108

Query: 61  TKV--PIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERA 120
           TK    IIGYC+R RYEN QL EHHGEWIMHEYSLH+  I     DSNYVLCR +KNER 
Sbjct: 109 TKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQDSIQQAV-DSNYVLCRFKKNERF 168

Query: 121 KRKAEK 125
           KRK +K
Sbjct: 169 KRKLQK 173

[Close]

BLAST of HG10004047 vs. ExPASy TrEMBL
Match: A0A6J1HH13 (NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463973 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.5e-44
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MEPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISG 60
           MEPW+IW  + G DG+DLYFFTKLKRSTNNSG LSAHINRK+GLA+GTWSGENS + I  
Sbjct: 49  MEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFA 108

Query: 61  TKV--PIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERA 120
           TK    IIGYC+R RYEN QL EHHGEWIMHEYSLH+  I     DSNYVLCR +KNER 
Sbjct: 109 TKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQDSIQQAV-DSNYVLCRFKKNERF 168

Query: 121 KRKAEK 125
           KRK +K
Sbjct: 169 KRKLQK 173

[Close]

BLAST of HG10004047 vs. ExPASy TrEMBL
Match: A0A5D3CNQ3 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00810 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.6e-44
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 2   EPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISGT 61
           EPW+IW  +KG+DG+DLYFFTKLKRST N G LSAHI+RKIGLA+GTWSGENS TPI   
Sbjct: 55  EPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFAN 114

Query: 62  K--VPIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERAK 121
           +    IIGY +R RYEN Q+ EHHGEWIMHEY LH+S + +   D NYVLCRIRKNERAK
Sbjct: 115 EDDEQIIGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAK 174

Query: 122 RKAE 124
           RK E
Sbjct: 175 RKLE 178

[Close]

BLAST of HG10004047 vs. ExPASy TrEMBL
Match: A0A5A7TC54 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00130 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.6e-44
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 2   EPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISGT 61
           EPW+IW  +KG+DG+DLYFFTKLKRST N G LSAHI+RKIGLA+GTWSGENS TPI   
Sbjct: 55  EPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFAN 114

Query: 62  K--VPIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERAK 121
           +    IIGY +R RYEN Q+ EHHGEWIMHEY LH+S + +   D NYVLCRIRKNERAK
Sbjct: 115 EDDEQIIGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAK 174

Query: 122 RKAE 124
           RK E
Sbjct: 175 RKLE 178

[Close]

BLAST of HG10004047 vs. ExPASy TrEMBL
Match: A0A5D3CL63 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00650 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.6e-44
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 2   EPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISGT 61
           EPW+IW  +KG+DG+DLYFFTKLKRST N G LSAHI+RKIGLA+GTWSGENS TPI   
Sbjct: 55  EPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFAN 114

Query: 62  K--VPIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERAK 121
           +    IIGY +R RYEN Q+ EHHGEWIMHEY LH+S + +   D NYVLCRIRKNERAK
Sbjct: 115 EDDEQIIGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAK 174

Query: 122 RKAE 124
           RK E
Sbjct: 175 RKLE 178

[Close]

BLAST of HG10004047 vs. ExPASy TrEMBL
Match: A0A1S3CPA2 (NAC domain-containing protein 83-like OS=Cucumis melo OX=3656 GN=LOC103503286 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.6e-44
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 2   EPWQIWNFYKGVDGQDLYFFTKLKRSTNNSGHLSAHINRKIGLASGTWSGENSVTPISGT 61
           EPW+IW  +KG+DG+DLYFFTKLKRST N G LSAHI+RKIGLA+GTWSGENS TPI   
Sbjct: 55  EPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFAN 114

Query: 62  K--VPIIGYCRRLRYENPQLSEHHGEWIMHEYSLHESVIIHGYSDSNYVLCRIRKNERAK 121
           +    IIGY +R RYEN Q+ EHHGEWIMHEY LH+S + +   D NYVLCRIRKNERAK
Sbjct: 115 EDDEQIIGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAK 174

Query: 122 RKAE 124
           RK E
Sbjct: 175 RKLE 178

The following BLAST results are available for this feature:

BLAST of HG10004047 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877574.1	3.0e-52	79.69	NAC domain-containing protein 96-like [Benincasa hispida]	[more]
XP_023511534.1	1.0e-44	71.43	NAC domain-containing protein 72-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571625.1	1.8e-44	71.43	NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. soror...	[more]
KAG6571617.1	1.8e-44	71.43	NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022963781.1	5.2e-44	71.43	NAC domain-containing protein 30-like [Cucurbita moschata]	[more]

BLAST of HG10004047 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH13	2.5e-44	71.43	NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A5D3CNQ3	9.6e-44	70.16	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TC54	9.6e-44	70.16	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3CL63	9.6e-44	70.16	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CPA2	9.6e-44	70.16	NAC domain-containing protein 83-like OS=Cucumis melo OX=3656 GN=LOC103503286 PE...	[more]

BLAST of HG10004047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 3..93 e-value: 4.4E-9 score: 37.3
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 1..115 score: 18.516182
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 1..120 e-value: 1.9E-18 score: 68.7
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 2..114
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 2..122
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 2..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004047.1	HG10004047.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding