HG10003901 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003901
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCACTA en-spm transposon protein
LocationChr08: 11386614 .. 11388430 (+)
RNA-Seq ExpressionHG10003901
SyntenyHG10003901
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAACTATTATCAGTTTGATTTGTCCCAACATCAAGTTGTGAGATTTATTGAACGACAAATGCAAACTACATTTAAAGAGTATAGGTCAGAGTTGCATAAACACTATAAACAATTTGCAACTCCTGAAGAGGCACGTGCATGCCCACCTGATCGGCTTAAGAATGCACTTGAAGATTGGCATATCGTATGCACGAGGTTTGAGAGCCCTAATTTTAAGGTATGATACTTCAATTATTGAGTTATTTTTCTAAGTTTGTTTACTTGACTTTTAGCTAATTTATAGTTTTATTAGAAAATGGTTGAAACGAACAAGAGGAGTTGAGAGGAACTTGATTTTAACCATAAAACTAGATCAAAGACATTCATCAACATACAACAAGATCTGGTATGAGGCTAGACAATAAATGTTTCTTTTGCTTTGATAACTCTTATTCAAGTTGACCTTTTTGTGATTTGAGTTACAGATAAAGAGTAAAGGTGAAACCGTTGGACCAATCGATCTATTCTATGAAACACATGCACGAGACGGAATTTTTGTGAATCAGGCTGCCAGTGATGCATATGTAAAACTTTTTTTTTTATTAAACAATGATTTCATTTGGAATTTTGTTACATATTTACTTATTTTAATTATATAATTGTAGGATAAAATGTTACAGTTGCAAGCGATGCCAACTCCAGAAGGAAACCAACCACTTTCAGGAGAAGAAATATGTGAGGTTGTGTTAGGAAGACGACCGGGTCATGTCAAAGGTCTTGGTTGGGGACCAAAGCCAAAATCTAGAAGTAATAACAGCTCGTCATCAAGTTCATCCTACGCACAAAAAGAGCACGAGCAAGCAGTTGAGATGAGGATTTTAAAAGAACGACTTGAACAACAGGATTCAAGAATTGAAGAACAACAAACAGAGATAGAGGGCTTGAAAGATTTGATCAAACAATTTATGAACTCGCAAGGAGGAATGCCAGAATAGGTATGAAGTAAAAAGTTTTTTTTTTTTTAATAAAAACAGTAGATAAAAAATAGTTAGTTTTGAGAATTATGTTGCTATCCTGCAGTTATGGTAGCAACTACATTATTTGTATGATGCAATAAAATGTTATTTGTTTTTGTTATGGTTTTGAATGTGGGGGCTAAAATAATGTTGTTATTTTGAATATAAGGTGAGAATCTTTTTTTAATGTATGGTTGAGATGTGTTGTTGTTTTAAATTTGGGTTGACGTTCTGAGTTAATAATTTTCTTGTTGTTGTTTTGAATGTTGAGTTGAGAATTGTGAATGTTGGATTTTTGTGTTATTGTGTGTTTTGCATGTGTTAAAGAAACATGAGTTAATAGATTTTTTGTTGTTTTGAGTATGTGTTAAAGAAATGTTAATTAATGAGTTTTGTGATGTTATTGTCTTAAATGTGAGTTGAGATTTCTAAGTTCATAATTTTTGTGTTATTACTTTGGTTTTGCATATGTGTTAACAAAATGTGAGTAGATAATTGTTGTGTTGATATTATTGTTTTGAATGTTGAATTGAGAATTGTGAGTGTTGAATGTTTGTGTTGTTTTTGTTGTTTTGAACATGTGTATTGAAATGTTAGCTAATGGTTTTTGTGATGTTGTTATTGTTTTGAATGTGAGTTAAAGGTTTTGAGTTAATGATTTTTGTGTTGTTTTGAATGAGTGAATGTATTTAGATAATATATATATATATATATATATATATGTTTGAGTTGAGAGATTTAATTTTAAGTGTTTTGATTATAATTTAAACTTTGTTTGTATTTTCTTTTACAGGATCAATGTTATGTTCGTGACTAA

mRNA sequence

ATGCAGAACTATTATCAGTTTGATTTGTCCCAACATCAAGTTGTGAGATTTATTGAACGACAAATGCAAACTACATTTAAAGAGTATAGGTCAGAGTTGCATAAACACTATAAACAATTTGCAACTCCTGAAGAGGCACGTGCATGCCCACCTGATCGGCTTAAGAATGCACTTGAAGATTGGCATATCGTATGCACGAGGTTTGAGAGCCCTAATTTTAAGGATCAATGTTATGTTCGTGACTAA

Coding sequence (CDS)

ATGCAGAACTATTATCAGTTTGATTTGTCCCAACATCAAGTTGTGAGATTTATTGAACGACAAATGCAAACTACATTTAAAGAGTATAGGTCAGAGTTGCATAAACACTATAAACAATTTGCAACTCCTGAAGAGGCACGTGCATGCCCACCTGATCGGCTTAAGAATGCACTTGAAGATTGGCATATCGTATGCACGAGGTTTGAGAGCCCTAATTTTAAGGATCAATGTTATGTTCGTGACTAA

Protein sequence

MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALEDWHIVCTRFESPNFKDQCYVRD
Homology
BLAST of HG10003901 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-14
Identity = 36/74 (48.65%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           MQ+Y+ FD+ +  V +++ +++Q TFKEYRS+L+KHY++F  P+EARACPP R+ +A  D
Sbjct: 481 MQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA-TD 540

Query: 61  WHIVCTRFESPNFK 75
           W+++C R+E+P +K
Sbjct: 541 WNLLCNRWETPEWK 553

BLAST of HG10003901 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-14
Identity = 36/74 (48.65%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           MQ+Y+ FD+ +  V +++ +++Q TFKEYRS+L+KHY++F  P+EARACPP R+ +A  D
Sbjct: 669 MQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA-TD 728

Query: 61  WHIVCTRFESPNFK 75
           W+++C R+E+P +K
Sbjct: 729 WNLLCNRWETPEWK 741

BLAST of HG10003901 vs. NCBI nr
Match: XP_038887411.1 (poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412.1 poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-14
Identity = 36/74 (48.65%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           MQ+Y+ FD+ +  V +++ +++Q TFKEYRS+L+KHY++F  P+EARACPP R+ +A  D
Sbjct: 669 MQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA-TD 728

Query: 61  WHIVCTRFESPNFK 75
           W+++C R+E+P +K
Sbjct: 729 WNLLCNRWETPEWK 741

BLAST of HG10003901 vs. NCBI nr
Match: XP_038887410.1 (poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 7.9e-14
Identity = 36/74 (48.65%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           MQ+Y+ FD+ +  V +++ +++Q TFKEYRS+L+KHY++F  P+EARACPP R+ +A  D
Sbjct: 669 MQSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA-TD 728

Query: 61  WHIVCTRFESPNFK 75
           W+++C R+E+P +K
Sbjct: 729 WNLLCNRWETPEWK 741

BLAST of HG10003901 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 6.7e-13
Identity = 34/72 (47.22%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 3   NYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALEDWH 62
           +Y+ FD+ +  V +++ +++Q TFKEYRS+L+KHY++F  P+EARACPP R+ +A  DW+
Sbjct: 644 SYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDA-TDWN 703

Query: 63  IVCTRFESPNFK 75
           ++C R+E+P +K
Sbjct: 704 LLCNRWETPEWK 714

BLAST of HG10003901 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.7e-12
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 2  QNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALEDW 61
          Q +++ DLS+  V +FIE+QMQ +FK+YRS+LH++Y +F  P EARA PP+RL N  EDW
Sbjct: 18 QEHFRVDLSKRVVNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLTNP-EDW 77

Query: 62 HIVCTRFESPNFKD 76
          + +C R+E+P +K+
Sbjct: 78 NHLCDRWETPEWKE 90

BLAST of HG10003901 vs. ExPASy TrEMBL
Match: A0A5A7U0Z1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00150 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           +Q ++  D +   + RFIE QM TTFKE+R++ HKH+K+++ PEEARA PP+ L    ED
Sbjct: 52  LQRFFVLDFNDQAMNRFIEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 111

Query: 61  WHIVCTRFESPNFKDQ 77
           WH +C  + S  F++Q
Sbjct: 112 WHFLCDHYISRAFQEQ 127

BLAST of HG10003901 vs. ExPASy TrEMBL
Match: A0A5A7VAR5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00950 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-12
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           +Q  +  D + H + RF+E QM TTFKE+R++ H+H+K+++ PEEARA PP+ L    ED
Sbjct: 488 LQRLFVLDFNDHAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDED 547

Query: 61  WHIVCTRFESPNFKDQ 77
           WH +C  + S  F++Q
Sbjct: 548 WHFLCDHYISRAFQEQ 563

BLAST of HG10003901 vs. ExPASy TrEMBL
Match: A0A5A7T4P0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00310 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.1e-12
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           +Q ++  D +   + RF+E QM TTFKE+R++ HKH+K+++ PEEARA PP+ L    ED
Sbjct: 115 LQRFFVLDFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 174

Query: 61  WHIVCTRFESPNFKDQ 77
           WH +C  + S  F++Q
Sbjct: 175 WHFLCDHYISRAFQEQ 190

BLAST of HG10003901 vs. ExPASy TrEMBL
Match: A0A5D3DD82 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00120 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.1e-12
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 1   MQNYYQFDLSQHQVVRFIERQMQTTFKEYRSELHKHYKQFATPEEARACPPDRLKNALED 60
           +Q ++  D +   + RF+E QM TTFKE+R++ HKH+K+++ PEEARA PP+ L    ED
Sbjct: 114 LQRFFVLDFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 173

Query: 61  WHIVCTRFESPNFKDQ 77
           WH +C  + S  F++Q
Sbjct: 174 WHFLCDHYISRAFQEQ 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887413.17.9e-1448.65uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida][more]
XP_038887408.17.9e-1448.65poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida][more]
XP_038887411.17.9e-1448.65poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412... [more]
XP_038887410.17.9e-1448.65poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida][more]
XP_038887409.16.7e-1347.22poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DUH32.7e-1251.35uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7U0Z14.7e-1246.05CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7VAR54.7e-1244.74CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7T4P06.1e-1244.74CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DD826.1e-1244.74CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003901.1HG10003901.1mRNA