HG10003733 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003733
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Enzymatic polyprotein
Location	Chr08: 7420371 .. 7420829 (-)
RNA-Seq Expression	HG10003733
Synteny	HG10003733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAACCAAAAGCCTTAGTGCATTCCCCTAAAGGGAAAACTATTCTAATAGAGACGAATTTAAATAAATCCTCTGTTAGTATTCCTAGAATGCTTTCATGGGACGAAATAACAAGGAACCCCAAATGGGTTCTTGATAATGCATTTACTCCTCCAAAAAAGGAGAAAGAACTTTCCCATATTATTGAATACCCAGATGGGAAGGTAAAAATAAAATTTGAATATGAATCTCCAAAGTTTCCAATACTTAGAGAAAGCATAAATACAAAAGAATTTATGAATTCAAGACCTAGTACATCAAGTATTAAAGATGATCCACATCCTAGTCTTATTAGATCTAACTTTCTAAGAGTAAATTCAGTAAGATTAAATCATGGTATTCCAAATATTCAATATGAAGAAGAGAAAGTTACTTCTCCAACGCAAACTGAGGGTCAAACTTTAAAAGTCAATTAA

mRNA sequence

ATGATGGAACCAAAAGCCTTAGTGCATTCCCCTAAAGGGAAAACTATTCTAATAGAGACGAATTTAAATAAATCCTCTGTTAGTATTCCTAGAATGCTTTCATGGGACGAAATAACAAGGAACCCCAAATGGGTTCTTGATAATGCATTTACTCCTCCAAAAAAGGAGAAAGAACTTTCCCATATTATTGAATACCCAGATGGGAAGGTAAAAATAAAATTTGAATATGAATCTCCAAAGTTTCCAATACTTAGAGAAAGCATAAATACAAAAGAATTTATGAATTCAAGACCTAGTACATCAAGTATTAAAGATGATCCACATCCTAGTCTTATTAGATCTAACTTTCTAAGAGTAAATTCAGTAAGATTAAATCATGGTATTCCAAATATTCAATATGAAGAAGAGAAAGTTACTTCTCCAACGCAAACTGAGGGTCAAACTTTAAAAGTCAATTAA

Coding sequence (CDS)

ATGATGGAACCAAAAGCCTTAGTGCATTCCCCTAAAGGGAAAACTATTCTAATAGAGACGAATTTAAATAAATCCTCTGTTAGTATTCCTAGAATGCTTTCATGGGACGAAATAACAAGGAACCCCAAATGGGTTCTTGATAATGCATTTACTCCTCCAAAAAAGGAGAAAGAACTTTCCCATATTATTGAATACCCAGATGGGAAGGTAAAAATAAAATTTGAATATGAATCTCCAAAGTTTCCAATACTTAGAGAAAGCATAAATACAAAAGAATTTATGAATTCAAGACCTAGTACATCAAGTATTAAAGATGATCCACATCCTAGTCTTATTAGATCTAACTTTCTAAGAGTAAATTCAGTAAGATTAAATCATGGTATTCCAAATATTCAATATGAAGAAGAGAAAGTTACTTCTCCAACGCAAACTGAGGGTCAAACTTTAAAAGTCAATTAA

Protein sequence

MMEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSHIIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDPHPSLIRSNFLRVNSVRLNHGIPNIQYEEEKVTSPTQTEGQTLKVN

Homology

[Close]

BLAST of HG10003733 vs. NCBI nr
Match: KAA0057417.1 (Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-20
Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKAL  SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L    TP K+    + 
Sbjct: 130 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 189

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           IIE+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 190 IIEFPDGNVEVQFN-TGISYP------RISEIMSSRPSTSSIKTETSYRDTLRRSESIRA 249

Query: 122 NSVRLNHGIPNIQYE-EEKVTSPTQT 145
            SV  +H IP++ YE E++  SPTQ+
Sbjct: 250 -SVDFSHTIPDVHYEKEDESLSPTQS 267

[Close]

BLAST of HG10003733 vs. NCBI nr
Match: KAA0050445.1 (hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 6.9e-19
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKAL  SPKG T+L+E N+ KSS++IPR L+WDE+T+NP W L     P K+    + 
Sbjct: 130 LSPKALGVSPKGYTMLMEVNIEKSSMTIPRNLNWDELTKNPVWKLQGETAPIKRSSTEAS 189

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPST SIK +     +L RS  +R 
Sbjct: 190 ITEFPDGNVEVQFN-TGISYP------RISEIMSSRPSTPSIKSETSYRDTLRRSESIRA 249

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP++ YE+E  + SPTQ++
Sbjct: 250 -SVDFSHTIPDVHYEKEDGSLSPTQSD 268

[Close]

BLAST of HG10003733 vs. NCBI nr
Match: TYK28080.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 9.0e-19
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKA   SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L    TP K+    + 
Sbjct: 224 LSPKAPGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 284 ITEFPDGNVEVQFN-TGISYP------RISEIMSSRPSTSSIKTETSYRDTLRRSESIRA 343

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP++ YE+E  + SPTQ++
Sbjct: 344 -SVDFSHTIPDVHYEKEDGSLSPTQSD 362

[Close]

BLAST of HG10003733 vs. NCBI nr
Match: KAA0032920.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 9.0e-19
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKA   SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L    TP K+    + 
Sbjct: 224 LSPKAPGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 284 ITEFPDGNVEVQFN-TGISYP------RISEIMSSRPSTSSIKTETSYRDTLRRSESIRA 343

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP++ YE+E  + SPTQ++
Sbjct: 344 -SVDFSHTIPDVHYEKEDGSLSPTQSD 362

[Close]

BLAST of HG10003733 vs. NCBI nr
Match: KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 9.0e-19
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKAL  SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L     P  +    + 
Sbjct: 225 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETAPVTRSSTEAS 284

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 285 ITEFPDGNVEVQFN-SGLSYP------RVSEIMSSRPSTSSIKSEASYRETLRRSESIRA 344

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP++ YE+E  + SPTQ++
Sbjct: 345 -SVDFSHTIPDVHYEKEDGSLSPTQSD 363

[Close]

BLAST of HG10003733 vs. ExPASy TrEMBL
Match: A0A5A7URX9 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00980 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKAL  SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L    TP K+    + 
Sbjct: 130 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 189

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           IIE+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 190 IIEFPDGNVEVQFN-TGISYP------RISEIMSSRPSTSSIKTETSYRDTLRRSESIRA 249

Query: 122 NSVRLNHGIPNIQYE-EEKVTSPTQT 145
            SV  +H IP++ YE E++  SPTQ+
Sbjct: 250 -SVDFSHTIPDVHYEKEDESLSPTQS 267

[Close]

BLAST of HG10003733 vs. ExPASy TrEMBL
Match: A0A5A7UA27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00510 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.3e-19
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKAL  SPKG T+L+E N+ KSS++IPR L+WDE+T+NP W L     P K+    + 
Sbjct: 130 LSPKALGVSPKGYTMLMEVNIEKSSMTIPRNLNWDELTKNPVWKLQGETAPIKRSSTEAS 189

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPST SIK +     +L RS  +R 
Sbjct: 190 ITEFPDGNVEVQFN-TGISYP------RISEIMSSRPSTPSIKSETSYRDTLRRSESIRA 249

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP++ YE+E  + SPTQ++
Sbjct: 250 -SVDFSHTIPDVHYEKEDGSLSPTQSD 268

[Close]

BLAST of HG10003733 vs. ExPASy TrEMBL
Match: A0A5A7UX67 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001460 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKAL  SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L     P  +    + 
Sbjct: 225 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETAPVTRSSTEAS 284

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 285 ITEFPDGNVEVQFN-SGLSYP------RVSEIMSSRPSTSSIKSEASYRETLRRSESIRA 344

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP++ YE+E  + SPTQ++
Sbjct: 345 -SVDFSHTIPDVHYEKEDGSLSPTQSD 363

[Close]

BLAST of HG10003733 vs. ExPASy TrEMBL
Match: A0A5A7UR29 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00660 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 64/147 (43.54%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKAL  SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L     P  +    + 
Sbjct: 225 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETAPVTRSSTEAS 284

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 285 ITEFPDGNVEVQFN-SGLSYP------KISEIMSSRPSTSSIKSEASYRETLRRSESIRA 344

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP+I YE+E  + SPTQ++
Sbjct: 345 -SVDFSHTIPDIHYEKEDGSLSPTQSD 363

[Close]

BLAST of HG10003733 vs. ExPASy TrEMBL
Match: A0A5D3DXV6 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003440 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 2   MEPKALVHSPKGKTILIETNLNKSSVSIPRMLSWDEITRNPKWVLDNAFTPPKKEKELSH 61
           + PKA   SPKG T+L+E N+ KSS++IPR L WDE+T+NP W L    TP K+    + 
Sbjct: 224 LSPKAPGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 62  IIEYPDGKVKIKFEYESPKFPILRESINTKEFMNSRPSTSSIKDDP--HPSLIRSNFLRV 121
           I E+PDG V+++F      +P         E M+SRPSTSSIK +     +L RS  +R 
Sbjct: 284 ITEFPDGNVEVQFN-TGISYP------RISEIMSSRPSTSSIKTETSYRDTLRRSESIRA 343

Query: 122 NSVRLNHGIPNIQYEEEKVT-SPTQTE 146
            SV  +H IP++ YE+E  + SPTQ++
Sbjct: 344 -SVDFSHTIPDVHYEKEDGSLSPTQSD 362

The following BLAST results are available for this feature:

BLAST of HG10003733 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057417.1	2.8e-20	45.21	Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprote...	[more]
KAA0050445.1	6.9e-19	42.86	hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa]	[more]
TYK28080.1	9.0e-19	43.54	movement protein [Cucumis melo var. makuwa]	[more]
KAA0032920.1	9.0e-19	43.54	movement protein [Cucumis melo var. makuwa]	[more]
KAA0059217.1	9.0e-19	42.86	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of HG10003733 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URX9	1.4e-20	45.21	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21...	[more]
A0A5A7UA27	3.3e-19	42.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UX67	4.4e-19	42.86	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7UR29	4.4e-19	43.54	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5D3DXV6	4.4e-19	43.54	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003...	[more]

BLAST of HG10003733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003733.1	HG10003733.1	mRNA