HG10003647 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003647
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal protein L2
Location	Chr08: 4868522 .. 4869808 (-)
RNA-Seq Expression	HG10003647
Synteny	HG10003647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTCCTACTGACGGAATCGCTTGAATTAGTTGAAGGAAAGGAGGTGGCTGGTCTCACTGGAGAGGAGAGTTTTGACAGCGAGGGAGGCAGGGGTGCGTGCGTCTGCTGGTATCGTATATAAGAGAAAGGCTGCATTTAGGAGTGATCTTTCCCTCTTCTTCAAGCCAGTGGTGATCTCACTTTCGAAAGAGAGTCTCGACGTGCTTAGTAGCGCGTAAACAGAACACGTAGCTCCGGCTACAGGTTTCTTTCCTACCGGACCGGAGGCAGCCGAGAATGTTATGTCAAAAGGACCAACGACGATGAAGGAGAAGAAAGAAGGAGTAGGAGCTAGTCTGCCTTTTTTTTATAAGAGTAGGGGCGGAATCGAATGATTACGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTGGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCGAAGGACGTTTTCTTCTCCGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACAGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCTAAGGGTAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGATAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCTGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTACCTGCCAAGCCGATAGGCGAAGGACCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

mRNA sequence

ATGACTTTCCTACTGACGGAATCGCTTGAATTAGTTGAAGGAAAGGAGGTGGCTGGTCTCACTGGAGAGGAGAGTTTTGACAGCGAGGGAGGCAGGGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTGGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCGAAGGACGTTTTCTTCTCCGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACAGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCTAAGGGTAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGATAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCTGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTACCTGCCAAGCCGATAGGCGAAGGACCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Coding sequence (CDS)

ATGACTTTCCTACTGACGGAATCGCTTGAATTAGTTGAAGGAAAGGAGGTGGCTGGTCTCACTGGAGAGGAGAGTTTTGACAGCGAGGGAGGCAGGGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTGGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCGAAGGACGTTTTCTTCTCCGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACAGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCTAAGGGTAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGATAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCTGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTACCTGCCAAGCCGATAGGCGAAGGACCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGA

Protein sequence

MTFLLTESLELVEGKEVAGLTGEESFDSEGGRGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV

Homology

[Close]

BLAST of HG10003647 vs. NCBI nr
Match: YP_009913619.1 (ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa acutangula])

HSP 1 Score: 542.0 bits (1395), Expect = 3.5e-150
Identity = 272/279 (97.49%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQR ID KRSTSSMGIVERIEYDPNRSSRIAPVRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRIIDKKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 77

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPG MAAYVVVG
Sbjct: 78  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGLMAAYVVVG 137

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGF R+AV
Sbjct: 138 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRIAV 197

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMR+KLRGKNTFSLCEVRKWRTHSILWAHR+KRKAALSWRSFRRQETLGL
Sbjct: 198 AGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRMKRKAALSWRSFRRQETLGL 257

Query: 273 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 312
           VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 258 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 296

[Close]

BLAST of HG10003647 vs. NCBI nr
Match: YP_003587229.1 (ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 540.8 bits (1392), Expect = 7.7e-150
Identity = 275/279 (98.57%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIA VRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIALVRWIE 77

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG
Sbjct: 78  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 137

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPTRMPPWSKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGF RVAV
Sbjct: 138 LPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRVAV 197

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL
Sbjct: 198 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 257

Query: 273 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 312
           VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 258 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of HG10003647 vs. NCBI nr
Match: WP_131796642.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 519.2 bits (1336), Expect = 2.4e-143
Identity = 266/281 (94.66%), Postives = 271/281 (96.44%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 77

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVA FSPGRMAAYVVVG
Sbjct: 78  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVG 137

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSS-FGFLRVA 212
           LPTRMPPWSKSPF  TSKGAGS+ TCAKDVFFSAFSS K KGET+SLSFGSS F F R+A
Sbjct: 138 LPTRMPPWSKSPF--TSKGAGSQITCAKDVFFSAFSSPKAKGETSSLSFGSSFFCFPRIA 197

Query: 213 VAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLG 272
           VAGAKPAFFAPRMR+KLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQETLG
Sbjct: 198 VAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLG 257

Query: 273 LVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 313
           LVGGAEHNESKPETDQGSLP KPIGEGPKDGACKVNRAPVV
Sbjct: 258 LVGGAEHNESKPETDQGSLPGKPIGEGPKDGACKVNRAPVV 296

[Close]

BLAST of HG10003647 vs. NCBI nr
Match: YP_003587363.1 (ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 [Cucurbita pepo])

HSP 1 Score: 512.3 bits (1318), Expect = 2.9e-141
Identity = 261/279 (93.55%), Postives = 268/279 (96.06%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIA VRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIALVRWIE 77

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSS PGKVDQRKVACFSPG+MAAYVVVG
Sbjct: 78  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQRKVACFSPGQMAAYVVVG 137

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPTR+PP SKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSS GF R+AV
Sbjct: 138 LPTRIPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAV 197

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMR+K+RGKNTFSLCEVRKWRTHSILWAHR+KRKAAL W+SFRRQET GL
Sbjct: 198 AGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGL 257

Query: 273 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 312
           VGGAEHNESKPETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 258 VGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of HG10003647 vs. NCBI nr
Match: YP_009706786.1 (ribosomal protein L2 [Ilex pubescens] >QEP49780.1 ribosomal protein L2 [Ilex pubescens])

HSP 1 Score: 504.6 bits (1298), Expect = 6.1e-139
Identity = 258/283 (91.17%), Postives = 266/283 (93.99%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 77

Query: 93  GV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYV 152
           GV   RQRKC TIEEFAPPRKILEPTTTTIRG FSFSS PGKVDQRKVACFSPG MAAYV
Sbjct: 78  GVQLGRQRKCNTIEEFAPPRKILEPTTTTIRGPFSFSSLPGKVDQRKVACFSPGLMAAYV 137

Query: 153 VVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLR 212
           VVGLPTRMPPWSKSP   TSKGAGS+KTCAKDVFFSA SS K KGETASLSFGSSF F R
Sbjct: 138 VVGLPTRMPPWSKSP--KTSKGAGSQKTCAKDVFFSALSSPKAKGETASLSFGSSFAFPR 197

Query: 213 VAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQET 272
           +AVAGAKPAFFAPRMR+K+RGKNTFSLCE+RKWRTHSILWAHRIKRKAALSW+SFRRQET
Sbjct: 198 IAVAGAKPAFFAPRMREKVRGKNTFSLCEIRKWRTHSILWAHRIKRKAALSWQSFRRQET 257

Query: 273 LGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 313
           LGLVG AEHNESKP+TDQGSLPAKPIGEGPKDG CKV+RAPVV
Sbjct: 258 LGLVGAAEHNESKPKTDQGSLPAKPIGEGPKDGTCKVDRAPVV 298

[Close]

BLAST of HG10003647 vs. ExPASy Swiss-Prot
Match: P93311 (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 PE=1 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 7.3e-119
Identity = 227/290 (78.28%), Postives = 243/290 (83.79%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRSS+IAPVRWI+
Sbjct: 17  GKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIK 76

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSPG MAAYVVVG
Sbjct: 77  GGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYVVVG 136

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F SSFGF R+AV
Sbjct: 137 LPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAV 196

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMR K+RGK+TFSLCEV+K RTHSILWAHRIK KA LSW+SFRRQ+TLGL
Sbjct: 197 AGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGL 256

Query: 273 VGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 312
           VG A H +SKP+TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 257 VGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of HG10003647 vs. ExPASy Swiss-Prot
Match: P0C8K6 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.3e-79
Identity = 184/322 (57.14%), Postives = 196/322 (60.87%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERIEYDPNRSSRIA VRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIE 77

Query: 93  GV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYV 152
           GV   RQRK KTIEEFA PRKILE TT TI  LFSFSS                      
Sbjct: 78  GVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSS---------------------- 137

Query: 153 VVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLR 212
                                                 SS   +GETASLSFGSS GF R
Sbjct: 138 -------------------------------------LSSPLAQGETASLSFGSSLGFPR 197

Query: 213 VAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQET 272
           +AVAGAKPAFFA RMR+K  GK TFSLCE+RKWRTH +LWAHRIKRKAALSW+S R+Q+T
Sbjct: 198 IAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKT 257

Query: 273 LGLVGGAEHNESKPETDQ---------------------------------------GSL 312
           L LVG AEHNESK + DQ                                       GSL
Sbjct: 258 LELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSL 280

[Close]

BLAST of HG10003647 vs. ExPASy Swiss-Prot
Match: Q2F969 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 3.3e-79
Identity = 184/322 (57.14%), Postives = 196/322 (60.87%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERIEYDPNRSSRIA VRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIE 77

Query: 93  GV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYV 152
           GV   RQRK KTIEEFA PRKILE TT TI  LFSFSS                      
Sbjct: 78  GVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSS---------------------- 137

Query: 153 VVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLR 212
                                                 SS   +GETASLSFGSS GF R
Sbjct: 138 -------------------------------------LSSPLAQGETASLSFGSSLGFPR 197

Query: 213 VAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQET 272
           +AVAGAKPAFFA RMR+K  GK TFSLCE+RKWRTH +LWAHRIKRKAALSW+S R+Q+T
Sbjct: 198 IAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKT 257

Query: 273 LGLVGGAEHNESKPETDQ---------------------------------------GSL 312
           L LVG AEHNESK + DQ                                       GSL
Sbjct: 258 LELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSL 280

[Close]

BLAST of HG10003647 vs. ExPASy Swiss-Prot
Match: P92812 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 3.3e-79
Identity = 184/322 (57.14%), Postives = 196/322 (60.87%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQR+IDLKRSTSS+GIVERIEYDPNRSSRIA VRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIE 77

Query: 93  GV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYV 152
           GV   RQRK KTIEEFA PRKILE TT TI  LFSFSS                      
Sbjct: 78  GVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSS---------------------- 137

Query: 153 VVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLR 212
                                                 SS   +GETASLSFGSS GF R
Sbjct: 138 -------------------------------------LSSPLAQGETASLSFGSSLGFPR 197

Query: 213 VAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQET 272
           +AVAGAKPAFFA RMR+K  GK TFSLCE+RKWRTH +LWAHRIKRKAALSW+S R+Q+T
Sbjct: 198 IAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKT 257

Query: 273 LGLVGGAEHNESKPETDQ---------------------------------------GSL 312
           L LVG AEHNESK + DQ                                       GSL
Sbjct: 258 LELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSL 280

[Close]

BLAST of HG10003647 vs. ExPASy Swiss-Prot
Match: P26859 (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 105/238 (44.12%), Postives = 125/238 (52.52%), Query Frame = 0


Query: 35  SAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIEGV 94
           SAGRNSSGRITVFHRGGGSKRLQR+ID KRSTSSMGIVERIEYDPNRSS IA VRWIEGV
Sbjct: 22  SAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDPNRSSWIALVRWIEGV 81

Query: 95  RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLP 154
            +   +     A  R+  E        LFSFSS P +  + K       R    ++    
Sbjct: 82  LRPGKRLAFSKANSRR--EKNMFFFGLLFSFSSLPRQAQRIKYEKTRALRPCEQIL---- 141

Query: 155 TRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAVAG 214
                        +S   G++   AK+V                   GS  G   +AVAG
Sbjct: 142 ------------ESSWVLGTRDLRAKEVSLG--------------PLGSFLGLPSIAVAG 201

Query: 215 AKPAFFAPRMR-----------DKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSW 262
           AKPAFFA RM+             LRG+NTFS  E ++W+T S   A R ++   LSW
Sbjct: 202 AKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQS--GAPR-RKSLVLSW 224

[Close]

BLAST of HG10003647 vs. ExPASy TrEMBL
Match: A0A7D5XZ32 (Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.7e-150
Identity = 272/279 (97.49%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQR ID KRSTSSMGIVERIEYDPNRSSRIAPVRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRIIDKKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 77

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPG MAAYVVVG
Sbjct: 78  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGLMAAYVVVG 137

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGF R+AV
Sbjct: 138 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRIAV 197

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMR+KLRGKNTFSLCEVRKWRTHSILWAHR+KRKAALSWRSFRRQETLGL
Sbjct: 198 AGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRMKRKAALSWRSFRRQETLGL 257

Query: 273 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 312
           VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 258 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 296

[Close]

BLAST of HG10003647 vs. ExPASy TrEMBL
Match: D5I399 (Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 3.7e-150
Identity = 275/279 (98.57%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIA VRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIALVRWIE 77

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG
Sbjct: 78  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 137

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPTRMPPWSKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGF RVAV
Sbjct: 138 LPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRVAV 197

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL
Sbjct: 198 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 257

Query: 273 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 312
           VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV
Sbjct: 258 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of HG10003647 vs. ExPASy TrEMBL
Match: D5I3E9 (Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.4e-141
Identity = 261/279 (93.55%), Postives = 268/279 (96.06%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIA VRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIALVRWIE 77

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSS PGKVDQRKVACFSPG+MAAYVVVG
Sbjct: 78  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQRKVACFSPGQMAAYVVVG 137

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPTR+PP SKSPF  TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSS GF R+AV
Sbjct: 138 LPTRIPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAV 197

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMR+K+RGKNTFSLCEVRKWRTHSILWAHR+KRKAAL W+SFRRQET GL
Sbjct: 198 AGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGL 257

Query: 273 VGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 312
           VGGAEHNESKPETD  SLPAKPIGEGPKDGACKVNRAPV
Sbjct: 258 VGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of HG10003647 vs. ExPASy TrEMBL
Match: A0A5C2I4L3 (Ribosomal protein L2 OS=Ilex pubescens OX=185543 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 3.0e-139
Identity = 258/283 (91.17%), Postives = 266/283 (93.99%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 77

Query: 93  GV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYV 152
           GV   RQRKC TIEEFAPPRKILEPTTTTIRG FSFSS PGKVDQRKVACFSPG MAAYV
Sbjct: 78  GVQLGRQRKCNTIEEFAPPRKILEPTTTTIRGPFSFSSLPGKVDQRKVACFSPGLMAAYV 137

Query: 153 VVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLR 212
           VVGLPTRMPPWSKSP   TSKGAGS+KTCAKDVFFSA SS K KGETASLSFGSSF F R
Sbjct: 138 VVGLPTRMPPWSKSP--KTSKGAGSQKTCAKDVFFSALSSPKAKGETASLSFGSSFAFPR 197

Query: 213 VAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQET 272
           +AVAGAKPAFFAPRMR+K+RGKNTFSLCE+RKWRTHSILWAHRIKRKAALSW+SFRRQET
Sbjct: 198 IAVAGAKPAFFAPRMREKVRGKNTFSLCEIRKWRTHSILWAHRIKRKAALSWQSFRRQET 257

Query: 273 LGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 313
           LGLVG AEHNESKP+TDQGSLPAKPIGEGPKDG CKV+RAPVV
Sbjct: 258 LGLVGAAEHNESKPKTDQGSLPAKPIGEGPKDGTCKVDRAPVV 298

[Close]

BLAST of HG10003647 vs. ExPASy TrEMBL
Match: A5BK62 (Ribosomal_L2 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_029794 PE=3 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.5e-138
Identity = 260/283 (91.87%), Postives = 267/283 (94.35%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVE IEYDPNRSSRIAPVRWIE
Sbjct: 18  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVEWIEYDPNRSSRIAPVRWIE 77

Query: 93  GV---RQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYV 152
           GV   RQRKC TIEEFAPPRKILEPTTTTIRGLFSFSS PGKVDQRKVACFSPG MAAYV
Sbjct: 78  GVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLPGKVDQRKVACFSPGPMAAYV 137

Query: 153 VVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLR 212
           VVGLPTRMPPWSKSPF  TSKGAGSKKTCAKDVFFSAFSS K KGET+SLSFGSSFGF R
Sbjct: 138 VVGLPTRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSPKAKGETSSLSFGSSFGFPR 197

Query: 213 VAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQET 272
           +AVAGAKPAFFAPRMR+KLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSW+SFRRQET
Sbjct: 198 IAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQET 257

Query: 273 LGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVV 313
           LGLVG AEHNESKP+TDQG   +KPIGEGPKDGACKV+RAPVV
Sbjct: 258 LGLVGAAEHNESKPKTDQG-FYSKPIGEGPKDGACKVDRAPVV 297

[Close]

BLAST of HG10003647 vs. TAIR 10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 428.3 bits (1100), Expect = 5.2e-120
Identity = 227/290 (78.28%), Postives = 243/290 (83.79%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRSS+IAPVRWI+
Sbjct: 17  GKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIK 76

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSPG MAAYVVVG
Sbjct: 77  GGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYVVVG 136

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F SSFGF R+AV
Sbjct: 137 LPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAV 196

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMR K+RGK+TFSLCEV+K RTHSILWAHRIK KA LSW+SFRRQ+TLGL
Sbjct: 197 AGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGL 256

Query: 273 VGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVNRAPV 312
           VG A H +SKP+TDQG+LPAKPIGE             KDGACKV+RAPV
Sbjct: 257 VGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of HG10003647 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 420.2 bits (1079), Expect = 1.4e-117
Identity = 223/286 (77.97%), Postives = 239/286 (83.57%), Query Frame = 0


Query: 33  GKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIE 92
           GKSAGRNSSGRITVFHRGGGSKRL RRIDLKRSTSSMGIVE IEYDPNRSS+IAPVRWI+
Sbjct: 17  GKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIK 76

Query: 93  GVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVG 152
           G  Q+K  TIE+FAPPRKILEPTT TI GLFSFS  PGKVD+RKVACFSPG MAAYVVVG
Sbjct: 77  GGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYVVVG 136

Query: 153 LPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFLRVAV 212
           LPT MPP S S     SKGAGS KT  KDVFFSAFSS K K ETASL+F SSFGF R+AV
Sbjct: 137 LPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSLKAKRETASLAFASSFGFPRIAV 196

Query: 213 AGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGL 272
           AGAKPAFFAPRMR K+RGK+TFSLCEV+K RTHSILWAHRIK KA LSW+SFRRQ+TLGL
Sbjct: 197 AGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGL 256

Query: 273 VGGAEHNESKPETDQGSLPAKPIGE-----------GPKDGACKVN 308
           VG A H +SKP+TDQG+LPAKPIGE             KDGACKV+
Sbjct: 257 VGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVD 302

[Close]

BLAST of HG10003647 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-07
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 37  GRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSM-GIVERIEYDPNRSSRIAPVRWIEGVR 96
           GRN+ G IT  HRGGG KRL R+ID +R+   + G +  IEYDPNR++ I  + + +G +
Sbjct: 40  GRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]

BLAST of HG10003647 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-07
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 37  GRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSM-GIVERIEYDPNRSSRIAPVRWIEGVR 96
           GRN+ G IT  HRGGG KRL R+ID +R+   + G +  IEYDPNR++ I  + + +G +
Sbjct: 40  GRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

The following BLAST results are available for this feature:

BLAST of HG10003647 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009913619.1	3.5e-150	97.49	ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa ...	[more]
YP_003587229.1	7.7e-150	98.57	ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citru...	[more]
WP_131796642.1	2.4e-143	94.66	hypothetical protein [Candidatus Frankia datiscae]	[more]
YP_003587363.1	2.9e-141	93.55	ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 [Cucurbit...	[more]
YP_009706786.1	6.1e-139	91.17	ribosomal protein L2 [Ilex pubescens] >QEP49780.1 ribosomal protein L2 [Ilex pub...	[more]

BLAST of HG10003647 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93311	7.3e-119	78.28	60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 ...	[more]
P0C8K6	3.3e-79	57.14	60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=...	[more]
Q2F969	3.3e-79	57.14	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G...	[more]
P92812	3.3e-79	57.14	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947...	[more]
P26859	1.3e-30	44.12	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2...	[more]

BLAST of HG10003647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D5XZ32	1.7e-150	97.49	Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1	[more]
D5I399	3.7e-150	98.57	Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1	[more]
D5I3E9	1.4e-141	93.55	Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=3 SV=1	[more]
A0A5C2I4L3	3.0e-139	91.17	Ribosomal protein L2 OS=Ilex pubescens OX=185543 GN=rpl2 PE=3 SV=1	[more]
A5BK62	1.5e-138	91.87	Ribosomal_L2 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_0297...	[more]

BLAST of HG10003647 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00560.1	5.2e-120	78.28	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G07715.1	1.4e-117	77.97	Nucleic acid-binding, OB-fold-like protein	[more]
ATCG00830.1	1.6e-07	45.90	ribosomal protein L2	[more]
ATCG01310.1	1.6e-07	45.90	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 37..113 e-value: 1.1E-18 score: 78.1
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 30..297
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 37..89 e-value: 7.7E-14 score: 51.4
None	No IPR available	GENE3D	2.40.50.140		coord: 28..100 e-value: 1.8E-21 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..312
None	No IPR available	PANTHER	PTHR13691:SF44	60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL-RELATED	coord: 30..297
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 33..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003647.1	HG10003647.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome