HG10003638 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003638
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 4735085 .. 4735384 (-)
RNA-Seq Expression	HG10003638
Synteny	HG10003638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTAACAACATGCAAAAGAAAGCTAATCCATCTTTTTCAATCTTTAACATTTTCAAATACAGAAGGGGTCGAAAAGGAGACCGCTGCGACTACGGTGGCTCTTGGCCAGATGAGATGTCGAAATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGATTGCTGAACCTGGTATTGATAGAAAGGCGAAAGATTACATTGATAGAATCTATAGAAACCGTATTTTTGAATCTGAGCGCCAAACTGTGACTATAACACCAAACGAAACAAAATTCAATGTGTAA

mRNA sequence

ATGAGAGGTAACAACATGCAAAAGAAAGCTAATCCATCTTTTTCAATCTTTAACATTTTCAAATACAGAAGGGGTCGAAAAGGAGACCGCTGCGACTACGGTGGCTCTTGGCCAGATGAGATGTCGAAATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGATTGCTGAACCTGGTATTGATAGAAAGGCGAAAGATTACATTGATAGAATCTATAGAAACCGTATTTTTGAATCTGAGCGCCAAACTGTGACTATAACACCAAACGAAACAAAATTCAATGTGTAA

Coding sequence (CDS)

ATGAGAGGTAACAACATGCAAAAGAAAGCTAATCCATCTTTTTCAATCTTTAACATTTTCAAATACAGAAGGGGTCGAAAAGGAGACCGCTGCGACTACGGTGGCTCTTGGCCAGATGAGATGTCGAAATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGATTGCTGAACCTGGTATTGATAGAAAGGCGAAAGATTACATTGATAGAATCTATAGAAACCGTATTTTTGAATCTGAGCGCCAAACTGTGACTATAACACCAAACGAAACAAAATTCAATGTGTAA

Protein sequence

MRGNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIAEPGIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV

Homology

[Close]

BLAST of HG10003638 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 3   GNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIAEP 62
           G N QKK++ SFSIF+ FK +RGRKGD  D+GG+WPDEM +S+KVWPSDEDK HHWIAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           GIDRKAKDYIDRIYRNR+FESERQTVTI+PN TK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of HG10003638 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.4e-36
Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MRGNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIA 60
           M GNN QKK++ SFSIF+ FK RRGRKGD C++ GS  DEM +S KVWPSDEDK HHW+A
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           EPGIDRKAKDYIDRIYRNR+FESERQT+TI+PN TK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of HG10003638 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 76/99 (76.77%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MRGNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIA 60
           M GNN QKKA+ SFSIF+ FK RRGRKGD C++ GS  DEM +S KVWPSDEDK HHW+A
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           EPGIDRKAKDYIDRIYRNR+FESERQTVTI+PN  K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of HG10003638 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MRGNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIA 60
           M GNN  KKA+ SFSIFN FK+RRGRK D CD+ G W DEM +S+KVWPSDEDK H W+A
Sbjct: 1   MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCW-DEMPRSNKVWPSDEDKMHRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           EPGIDRKAKDYIDRIYRNR+ ESERQTVT+  + TK ++
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98

[Close]

BLAST of HG10003638 vs. NCBI nr
Match: KAG6592311.1 (hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 7.9e-32
Identity = 69/99 (69.70%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 1   MRGNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIA 60
           M GNN  KK++ SFSIFN FK+R+GRK D  D+GG W +EM +S KVWPSDEDK H W+A
Sbjct: 1   MGGNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYW-NEMPRSGKVWPSDEDKTHRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           EPGIDRKAKDYID+IYRNRIFESERQTVT+  N TK  +
Sbjct: 61  EPGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLEI 98

[Close]

BLAST of HG10003638 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.1e-38
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 3   GNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIAEP 62
           G N QKK++ SFSIF+ FK +RGRKGD  D+GG+WPDEM +S+KVWPSDEDK HHWIAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           GIDRKAKDYIDRIYRNR+FESERQTVTI+PN TK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of HG10003638 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.1e-37
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 3   GNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIAEP 62
           G N QKK++ SFSIF+ FK RRGRKGD  D+GG+W DEM +S+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           GIDRKAKDYIDRIYRNR+FESERQTVTI+PN TK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of HG10003638 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MRGNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIA 60
           M GNN QKK++ SFSIF+ FK RRGRKGD C++ GS  DEM +S KVWPSDEDK HHW+A
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           EPGIDRKAKDYIDRIYRNR+FESERQT+TI+PN TK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of HG10003638 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 76/99 (76.77%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MRGNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIA 60
           M GNN QKKA+ SFSIF+ FK RRGRKGD C++ GS  DEM +S KVWPSDEDK HHW+A
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRIFESERQTVTITPNETKFNV 100
           EPGIDRKAKDYIDRIYRNR+FESERQTVTI+PN  K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of HG10003638 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 3  GNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIAEP 62
          G +  KK++ SFS F+  K +  RKGD  D+GGSW DE S+S KVWPSDEDK HHW+AEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRIFESERQTVTITPN 94
          GIDRKAKDYIDRIYRNR+FESERQTVTI  N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of HG10003638 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-12
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 3  GNNMQKKANPSFSIFNIFKYRRGRKGDRCDYGGSWPDEMSKSSKVWPSDEDKPHHWIAEP 62
          G   +  ++  FS+F+ FK RR     R +  GSW D+   + K   SDEDK  +W+AEP
Sbjct: 2  GGKNRSHSSKRFSLFSFFKTRRSH---RVEADGSW-DDFGYTRKAMASDEDK-RYWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRIFESERQTVT 90
          GIDRKA  +I + +  R+ ESERQT++
Sbjct: 62 GIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of HG10003638 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 30 RCDYGGSWPDEMSKSSKVWPSDEDKPHHWIAEPGIDRKAKDYIDRIYRNRIFESERQTV 89
          R +   SW D++  + K W SDEDK  +W+AEPGIDRKA  +I + + +R+ ESERQT+
Sbjct: 10 RVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

The following BLAST results are available for this feature:

BLAST of HG10003638 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45870.1	1.3e-37	78.35	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAA0035003.1	2.4e-36	75.76	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	4.0e-36	76.77	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KAG6592316.1	1.2e-32	70.71	hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592311.1	7.9e-32	69.70	hypothetical protein SDJN03_14657, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10003638 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	6.1e-38	78.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	5.1e-37	77.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	1.1e-36	75.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	2.0e-36	76.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8V3	6.1e-30	70.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of HG10003638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	4.3e-12	42.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.5e-09	49.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..89
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003638.1	HG10003638.1	mRNA