HG10003562 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003562
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30-kDa cleavage and polyadenylation specificity factor 30-like
Location	Chr08: 3301926 .. 3313432 (-)
RNA-Seq Expression	HG10003562
Synteny	HG10003562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACCGATGCATATTCGACAATGGAGGATCCTGATGTACAACAGGCAAATTATGTGCACGAAAATCAAGGCCAACATGGACACCACACTCGTTACCAGTTCCATGAGATGCCCACTCACAATAATCCAAGTTGGCGCTTTTATGAAAATTTCTCTTATGCTAATACTAGGAATGTTTTAAAGGCTCCACCAGGATTTGCATCAACATCTCAACAAGCTAAGAAGAAGCCTTCTATAGAGGAGCTAATGGGTAATTTCATCAAGGAGGCGAGGAATAGAATGACTCAACTGGAGAACACAATGGCTAGTCATGGGACGGCCATTCAGGACATAGAGACTCAAATTAGTCAGATCTCCAAAGCGATCAATGCCATGCATAAGGGTAAGCTCCTGAGCAACATTGAGGTAAATCCTAGTGAGCATTGTAGGGTGGTGACATTAAGGAGTAGCAGGCCTTTGGTAAGCCCTACATTAGATGTTGATGCTGAGACTGGAGAAGTTAATGTCGAGAAAGAGAAAGTTGAAGAAAAGAAGATTGAGAAGAGAGAAAAAGAAGTGCCTACATCTACATATCCAGAGAAGTATCCTAATCCTATCCATGTTATTTCTTTTAGCATTCCTTATCCTCCAAGATTTAGAAAAAAAAAATTAGAAGCTCAATTTTAAAATTTTTTAGAAATATTTAAGAAACTTCATATTAATATTCCTTTCGCTAAGACTCTTGAATAGATGCCTAACTTATGTTAAATTTGTGAAGGATGTGCTTTCAAGAAAAGAGAAGTTCAAGAAGTATGAAATTGTGAGCCTGACGGAGGAGTGTAGTGCAATACTGCAAAAGAAATTGCTTAAAAAACTTAAGGACCCAGGGAGTTTTACTATTCTTTACAATATTGGTAGTTTAGAGGTTAAACTTGGTTGATGTAACGACCCAGGTCGAGGATTTGGCAACTGATGGCCCCGACATTCCCCTGCGACTCGGCTACATCATCCTTGACTGTCTTGAATGCTTCTAAGAGTGAACGTCGTCCCCATAAACCAACACGGGTCCTTTCAGCATGTTTTGTCCTCACTCACATGCATCCTAGAAAAATCCCCAGGAGGTCACCCAACATAGGATTGCTCCAAGCTAAGCACACTTAACTATGAAATTCTTATGATTGAGCCACCGAAAAAAAAGGTGCACCTTGTTGATATAGGTAGTAACTTTCAATTATCTTAAGCCTTTCTTAACCATGTTTTCATGTCCTCAGGATCCCTCTCATTCGGATGTGATCTCGGTTCATTCATGTCTCCCTCCTGAACTCGGGTCGTTACAGTTGATTATTTGTGTAAATGCAAGTGTGGGCGAGAATTGTTTATCCAAGGTGGTTCAATGCATTGGAATAGTGAAACCACCTTAAGATCCTACATGATTTATGAGCCTCGTTCAGCTAAAATACGTTAAACTTAACACTTCTTAGGAGGCAACCCGAACTTTATTTATTTTTTCTTCAAGTAGTTGGCCATTTAAAATATTTTTTGCTTTTATGCTTCTAGTCTTTATTTTTTAGGTGATTCCTTGCACATTAGTTCGCAGACCTGATGTGTGTGGTCCACCACATTTTTCAGGCTAGTACAGTTCACTTCTTTTGTGCTTAGTTTATTTTTATTGCATTGGGGACAATACTAGTTTCTAAGTTTAGGGTGGGGGAAGTACTATGTCCTTTTGTGTCTTTGTTGTTTGATTCTATTATGCATGTTTTTAGGGGGGAAATAACTTATGCATGCTATGTATGTGAACATTTTGAGTGGCTAAACTTTTGAAAAAAAAATCGATTTTGGATAGAAAATATGATGTTGTGCTTTCATGAGAAAAATTCTATGAGCATGCTAGTGATCATGATTGCCTATGAGTTATTCTGGATTGCATGTTAGATAATCTGATATGGAAATATGATATCATAGTCTTGAGTTAGGATCTGTTTAAGTCCCTTTTGGAGTCCCTTGTATATCTAAGCATATAACAGTTTTTGTTTTGGTTTCTAAAAGTAAAGCATGATTTTACTTGAATTAATCAGGTTGTCACCTCAAAAGATCCTGAAATAAGTTAGAAAATTTTGTATGTATATTGTGTAATTTTATTACTAGATTGAGTAGAAAAGGAAAAAGTATGTTGGAGAAAAAAAAAAGAATAGTTTTGAAGAAGATTACCCCTCCTTCCATTACATCCTAGCTTAGGGAAGTGAGTAAGCTTAGGCACTTTGATTGAAATACTTCTCATAGTTGGATGTCATTCATGAAATCCATGTGGGCAAGCCAAAACGAAGTTGGTGTATCTTAAAAAATTATTCTTTTGTCTGAAAAGAAAAATAGGAAAAAAGAATACCAATCTAGTTGTCTTTTGCTACATAAATGATAGAGAAAATTATAATGAGTTTCAATGAACCAAAATAGGAGGAAAAACAAAAAAGATTCTTTTAAAGTCATGACAAGCTATTAGGAGTCTATGACTTAAACGAAAATGTTTGCGCACACACATGTGAGGGATGAAGAGATTTGGCCTTAAGATTTCTATAATAATGGATGTACTTGAAATGTTTCTGCATATAGATCTAACATGTACCTCTGAATGATGAGGTTGGAGTTATTTGCATGCTTGTTTAGAGATTCCTTATGGTTTTGTTCTGTCTTTGCTCGGGACTAGCAAATTTCTAAGTTTTGGGTGGTGAAGCATTTGAAAAGTACTTTCTTAGGCTTAGATTATGGTTAGTTTTATTACTTAAAATGAGTTTGTTGATACATTATTTGTTTCTTTTGTAGGAACTTAGTGTTAAGACTGAAATTGGCTAAACAAGATATAAAATGAAAGGTCAAACTTTAACCTAGGGCAAGAAAAGATGTGAAAAACGGTAAAAAAAAAAAGTGCAGAAAATAACAAGCACTATGATGCCACAACCCAAGAGGGTGCTACTAGATAATGTCGAGTGCTATGAAAATTTCAACGAGCGTCGTATTGAACAATGCCGCAGTGCCCACTTATGGTGTCGTGGCACCACAACGATTGTTCACTATTAAACATTTATTTTACATTTGAAGGGAGATCGATTAGGGGTTCACCTAGGACTTCCACAGAGGCTGAAAGGTTGATGTTTAGAGAGTTTTTCATAGTTGAATCGTTGGGATTGATCGAAGTTGAATTGTGAAGAAGATGCTTATGCGGTGTCAACGCGGATCGTGATTGACAGCTAATTCTCTTTTCTCTTCATTTTTTTCCCTTTGATGTTTTTGTATAACATGATTATGTTTAAGATTCTAAACATGTGTGGCTAATTCACTAGTGTTTTTAGGGTTAGAGTGATTTCAATTATGTTGTGGATTGTTCTTCATTAGTATAATTAATTGACTTCTATTTACTTCTTATCATGCTCGCACTTCTCCAATTAAATGCTTCATCACCATTTAATTGACTTTAGGTTTTTAATTCCTCTTAAGAGAGAGATTTCTAAATCGGAACTAGCATGATAAGCTGATATTAGAACGTGCATGAGAATGACAAGACAATATTGGAGGCTAATAACGAAGGGTCTTAACATTGTGTCTAATGGTTCAATTGCATGAAAATAGGGTTAATTTTTAGACATTAGAAAAGGTTGAGCTCGAGAGAGGAAGCCTGAGTAATAAAAGTCTGGCCCTAGGTAAATAATTAAATCGATTGAATGAAAACCCTTTGAATCCACAATATTGTTGAATGAAATCGACACCCTAAGGCAATTTAGCTAAGTGAATTTCTAATCGATTGTTTATTGCTTTCTTTTACTTTTGTACTTTCAAAACCAACATCAAGTGACGAATCACTTGATAAACTTACGACTATTTCATGATAGCTAGGAGAACCAATACCTAATTCCCAGATGACGATGCTTGGTCTCTTGACCGTTTTAACTATACTAAACTCAACGCGTACACTTGCCCTTGTCAGTAAGCTCAAACGAGCCCTCAAAGTTATTTCTTGAACTAATAGTTTTCAATTCTAGTTTACTTAATATTCACCATTTAAGTTAAATTTGAAGGTTATTATATTTTTGGTATTAGACATATACATATTATAAAAAAAAAACAATTTACGATTGTTTTATATTCAAATATTTTATATCTCTTTTAATTCTGTAATTAATTACCAATATTTAATATTATTTAATAATTATTTTTCTATTTCTTTAAATCATTTACGATATACATTTGAATATTGTCTTACTTTATAGAAATAGTGATAAAAAATGATCGAGTATAGTCTACGTAAACTATAATCAAAACTTCATTAACTAATTATAACAATTTTCATCAATTTTTATAAAATTTTCTCAAATTTTCACAGATGATATTTCCATAAAATTAGGATGTCGACCTTTATTATACTTAAAAAAAAATGTTTATATTAAGAAGTGATTAATCTCACTTATCCACCGATCTCTCAAATGGATTTAAGAATGTTCATTGACATCCCCATAATCCATATTGATTTGGTCAAAAGAATCCCTCAGGCAAAAGTGAAAAGTAAATTGCACACTCTCCGGTCTCTGCTTCTTCTTCGTTTCCAGCTGTGATCTGCTTCACAACCCTAATTCCGTAACCATTTCTCTTTCCTAATGGAGGATTCGGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGTCTCGATGCCGGCCCCACCAACCCCGCCGCCACCTCCTCCTTGCCTCTCATCCACTCCGACTCTTCTGCCCCGCCCGCCGCCTCCGCCGTCTCCAACTCCCTTTCCGGTGCCCTCGGTCCTGCTGTTTCAGCTGAACCTCCTGGCGCCCCGACCGGCAACGTCGGCAACCGGAGGAGCTTCCGGCAAACGGTTTGCCGGCATTGGCTCCGCAGCCTCTGCATGAAGGGCGATGCCTGTGGCTTCCTTCATCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTCCGTCTCTATGGCGAGTGCCGCGAGCAGGATTGCGTCTACAAACATACCAACGAAGATATCAAAGAGTGTAATATGTACGTTTTGGGAATTGGAACTTGGAATTTAGTTTTAGTCTTTAATTTCTTAGCTGTTCGTCAGATTTATGTTTTTGGTTGTTTAATTTCTTTGTACTCTTCTTTAATAGGAGGTGATCGATGTCTGCTTTCATCGTTTATGCCCTTCTTCTTTGTCCCTAGTTGTTTTGAATTTATTAGTACCATATGCAGTTCATAGATTGAAGACTGAGAATTTTTTTTCTTCTTTATCTCTTTTTCATTTTTTGATTTCTTTTTTTTAGATAAGAGGATGCTGTTTTCTTTAATATATGAAATTATACAAACAAAATCTACTCTCCCATCAGGAATATACAAAAGAGCATCAAAACTAACAGTTACATAAGTCGGTAGACAAATAAGCACCATGAAGAGAAACTTATCCAAATCGTAAGCATCCTTCCGATCTCTTTCCTTTCTTTGTTATTCTTGAATTCCTTGTTAACCATCAAGCCCATGAAATGGCCTTAGCTGCATTAATCCAAAGAGTTTTAAGCCTTTTCTTTAAAGTTTTTGCCACCCAACAACTGTATCGTTATTTTTCTAGTGGTACTATCAAAGGATTTAGGAAATTGTTTCCTATCCAAAAGAATAAAAGGAAAAAAGTACCTAAGAGAGATAAAAATAATGAAATAGAGTATCCTTACGTCTCTTCTGTACGAGCAAAGTAATAATAGTAGGTAATGTTAGGCATTGTTTGAATGTATACTTCTTTCCTTGAGTTTCCCCTCCAATGAAATTAATGATTCCCAAAAAGATACTTAAGTTTTAAGTTTAAGCTATGTGTATGGCTGTAATATGAACATGCCTATGACATGTAAAGTTGATGTTATCATTTGACATATTTGTGGCGCTAGATCATGAGGAATCCTCATTCAAGCTTTTACAAAATGAATCCCTGGTTTTATAACATAATCTTTTAAATTAATTTCTGTAGTACATCTTTTTAGACCAATTTTTGTTCTTTCAGAAACAATGGATGTTATACATCTGAAGGCTAAACACTGTAACTGCAGGTACAAGTTTGGTTTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCAAAGCTGCCTGGACCTCCACCTGCAGTGGAAGAAATCCTTCAGAAAATACAGCATTTAGGTTCATACAATTATGGACCCTCAAACAAATTCTTTTCACAACGTGGAGTTGGCTTATCCCAACAGAATGAAAAATCTCAGTTTCCTCAGAGTCCGGCCCTTGTCACTCAAGGAGTGACAGGAAAACCTTCTACAGCAGAATCTGCTAATGTCCAACAACAGCAAGCTCAGCAGTCTGCACAACAAACCAGCCAGACTCCAATACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAGAACTGCAACATCTTTGCCTCCAGGAATATCTAGGTGTGTCTGAAGAGACCTGAAGTCTTTTTGCATGTTTCTTTAACTAAGTTTTTGTATCATACGGACACAGTGTTGCAGAGACATGTTGTTTAATCTTCAGTGTTCAAATCATATTTGTGCTTTCGTTTGGTTACTTTAAGCCCCAGTAGTCATTAGTCAACAATGTTTTTCTCCATATCAATTTGTAGTCCATGGACCACAAGAATCTTTAGGTAGAATGAGATTCTAACTCAGTACCTTTTGAAATTTTAAGAAGAGTACATGTAAATATTTTTAATATCAGAAAATTTGCTTTTGTTGAGAAGAAATGAAGAATACAGAAGGGCCATGAATGGTATCATCATAAGGTATTAGCAATTTTACATGTTCTGTATCAAGCTATTAGATTCTATGTCGAAGCTTCATTACCATATGTTCATGCTCCCTTTTGATTAGTATCTCATGTCAATTGCCAAGTTCAAGAAACTATTTTTCCCCTCACGTTTATGGCTTTGTTATAGATTGGCTAGAATCTGTTGGCTCAAAGCTCATATTCTGTCATGTTAGGGTCTCATTAATACTTGAAATTGATGTGGTCTCTCCAGCTTCTGTAATTATACTCACTTTGTGATTTATGCAAAGTGGAGTTCTTTTCTGTAAAACCCAATCAGCAAGGTGTACCCTTCTTTGGTTCTGTAACCTTTTCCATTCATCTCCTGATAAAGACAAGTGGTTGCCCATTTTTAACATAATTTTGCAAACAGAAAAAAAAAAATCTACCTTACACACGAACCTTGTAAATAACTCTGAATGTTGTTATTTATTTTTGAAAGATTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGTGCTAATCATTCACTATTGTGTATGTGTATGAGTTATGACACTACTTGGTCATTGTGGACCGAAGTATGTTTGTTTGAGATAATCATACTGATTTACTATTGGTTGCTTAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGGCAAAACTTTTCACTCAAATGGCTTAAGGTTGATATTTCATTTCTTAGATCTATAGTTTTGTGCAGAAATTTATCACAATTACGTATCTCGTCATGCTGTTGCCTTTTAGGGTATAGGGTTTAAGATAATTTTGATGTCGTCAATTTAAGCCCCGCATGGTGTGATGAATAATTTGACTTTGTTACTTGCAGTTATGTGAACTATCCTTCCAGAAAACACGCCATTTGAGGAATCCATATAATGAAAACTTACCAGTAAAGGTATAGTATCTCAAGCTTGATGAAGAAAGATTTCTATTTATATTTACATCTGCAGATGTTTTTGTCATGCTTCTTCTTTCACTTGTGTTGTGAACTCTTGAAAATATTTCCCACTTCTTTTATCTTTTATGTTTATGATCCTTGTACTGTTTTGCACTTTCTGGTGATAATACATATTGCCGGTTTTGTTGCAGTCTAATTATCTGAAAGCACACTTCAGCACTTGCAATCTTGTGGATGAAAGTTTATTACCCCCCAACCCTTGGGTGGGTGTGGGTGTGGGGTTATCTGGGAGCTTTCTGTAGTATTTAGTTTCTAGAAATTACATTCTGCCTCATGTGGACTGTGCGATCTTTATTTTACTTATGTTCGAGTAATCATCTGGCAGAGTGTGCTAACATGGTTGATACAATCATGAGGATTGCAATCCTGATTGACCTCACACTTTAACTTGCAGCATACCTACGCCCATCATCCTTGTTTGCAAGGCTTTCTTTTGTTTTTAAGTTACTGTGTTGTTGCTTGTTTCACCGCAACCCTCTATTAGTTTTACTGCTGTTATTCCTATTACTAGTTACTTCTTTGGCCTGGTAAGTTTGTTGTCCTAAGGCTGGTTTGTAGCTTTTAAATAGTTTGTCCTATGGTGTTATGAAATGACATTTTAGTAAAGAATACTTCAAGATTTCTCCAAGAATAGTGTTACACTATCCTTTTTTTTTCCTAACACAACCTACCTAACTCTACAACATTTGGGTGTCAAGGAAACTCGTAGGATAATAATTCCTAGGTAGGTGGCCACCATGGATTGAAGTTTTGAACCAATGACCAAGTGTTATACTATCCAGATTGCTAATGTGGGCGGGTGAAGTTTTGGGATGAATTTTGAGTCAGCGACTGACTCTCATATCCTCCTCTGGTTAGGGCAGTGACCTTTATTTTTTTAAATTTCATGCATCATTAAAATTTGTTTCTCATTAATTAATAATAGTGGCTGACTCCCATATTTCCCTTTCTTTAGTACGGAACAAGGGCTAGATGTTTTTGCACAATGCTGGATCCTTCAAGTAGTTGGATGTTTGAATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTAACGATGATAAATTGAAAGAATGGAAAAAGATTATTATGTTCATTTTGGATGGTTTTGTTTCCCTTTCCAAATGTATAGGAAAGGAGATTATGTAAAGGACATTCTCTTTTACCATGGAATTTTGTAGAGCCAGGCTTTATGAAAATTAACCATATGTAAGCTAATTTATTTTCATGGCCAGTATTCCTTGGTATGAGCGGCACGACGGGAAAAATGGCTTGAATCCCTGATGGCTTTTCCTAATTGGTGCATGACCTGTTGATTGTTCTACGCAGGTTCCAAAGGAAAGCAATTGCTTTGATGGTAATGTATTTTAAGTGCAACACGTATTCTAATTTCTAGGGTAGGGATGACAAAAATCCCTGCCAGGATTAGTTCTAACTTCTAAGGTGGTTAGATAAAAGACCAGGGAGATAATTTTTATCAATTATTTTTTATGGGGTCGAGGAATAAATTTTCCACCCTGCTTCAACTTTGGAAATTTTTAAATATTATTTTATTATCTTCTTAAGACCTCATTATACATGGTGAGGAATGAAATATATAATTGGTCATTATAAGTTTGTAGAAAAAGTACTTTGATATAATGAATGAAAATAGGAAGATATTTAGTTAAAAGTACGAAGACCAGAAGTTCTTATTTCCCCTTTCCAAGATGTGGCAAAAGGGCTTCAGTAAAAATGTGTCAAAAAGGTGATCAAGGTAATCACCTGAGTGGAGGTGCTTCGTAAACTAACTGCACCTTGGCTTGCTGTCACTATAGGCGATCAATTGGACATACTTTGAAGGCACTGTTAAATGCTAGGACGACTTTTGTGGAAAGACCCGGTGCAGGTTAATCATTCCATGATCGAGGAATTTGTGAATTCACTTTGATATTTAGGAGGATTGGGAAATACATCAAAAAGCCATGATCTTTTGTTAGATAGTGGAATTTGATAGTAATTTGGTTGAGAGGAAACGAGATGATTTTCTGGAAAATTGTTGACACTGATTGCGTATCACATGAGATGGCTTTGATAGCTTCACTATGCTTCACCTTTAAAGGATTTAAAAGCCATCCCGTTTGTCTTTTACTATCGTTCAATTGGCACCCTGTTTCTACTCATTTGGTTTGAAACTGCTCATTGTCTTGGTTTGTTTTCTGTCGACCATCCACATGTACGTGGAGAATGATTGTTTGAAGAGATAATATTCTCTCTTTCATATCTTGTTCTGCAATCATTGTTAGCATTGGATATTAATTGAGCCATCATTTTTTTTTCGTACTCTTACAACTGCAGATCAGTAGAGATTGCCAAGAGCTAGAACCCTCTATTGGTGAGCAGCTGGCGTCTTTGCTTTATCTTGAGCCAGATGGTGAACTCATGGTATGCTTACTTTGTTTATCTTGGTCTAATTCAATTAGAAAACTTTGAAATACACTCCCATTACAATATAAGGATTGAAAATGCAAGCAGGCGAGGAAGAAAATAAAATTTGAGGAAATGGATTTTTGCAGTTCCAAGATTCATTTTTATATAATTGTGTGGGATAGCTTTAGCTGGATCTCTTAAGTGTGTTTTCTTTTTTTTTTTTTTATCAGGCTGTCTCACTAGCAGCAGAATCGAAACGAGAAGAGGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAGTGAGAACCCAGATATTGTCCCGTTTGAGGATAATGAAGAAGAGGAGGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCACCTCAGGGCAGAGGAAGGGGCAGGGGAATCATGTGGCCCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAGGGTTTTCCACCTGGGATGATGGGTCCAGATGGGCTTTCTTATGGTCCTGTTACACCTGACGGATTTCCCATGCCTGACATTTTTGGTATGGCCCCTCGTGGTTTTGGTCCATACGGTCCTAGGTTTTCCGGTGATTTTATGGGTCCTCCAACTGCTATGATGTTTCGGGGACGACCTTCTCAACCTGGGGCCATGTTTCCCCCTAGTGGGTTTGGCATGATGATGGGTCAAGGACGTGGTCCCTTCATGGGTGGGATGGGGGTTGCCGGTACCAACCCAGCTCGACCTGGTCGTCCTGTGGGTGTGTCTCCATTGTATCCACCCCCTGCAGTACCCTCATCTCAGAACATGAATCGAGCTATTAAGAGGGATCAAAGGGGACCGGCCAGTGATCGGAACGATAGATATATTGTGGGTCTGGACCAAAACAAAGGCCCAGAAATGCCAAGTAGTGGACGTGAGGACGAAATGCAATATAAGCAGGGATCAAAAGCCTATTCTGATGAGCAATATGGAATGGGAACCACCTTTAGGAATGAAGAAAGTGAAAGTGAGGATGAGGCACCTCGGCGATCAAGGCATGGAGAGGGTAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCGACTGCAATTTCTAATCAGTGA

mRNA sequence

ATGGCGGCAACCGATGCATATTCGACAATGGAGGATCCTGATGTACAACAGGCAAATTATGTGCACGAAAATCAAGGCCAACATGGACACCACACTCGTTACCAGTTCCATGAGATGCCCACTCACAATAATCCAAGATTTGCATCAACATCTCAACAAGCTAAGAAGAAGCCTTCTATAGAGGAGCTAATGGGTAATTTCATCAAGGAGGCGAGGAATAGAATGACTCAACTGGAGAACACAATGGCTAGTCATGGGACGGCCATTCAGGACATAGAGACTCAAATTAGTCAGATCTCCAAAGCGATCAATGCCATGCATAAGGGTAAGCTCCTGAGCAACATTGAGGTAAATCCTAGTGAGCATTGTAGGGTGGTGACATTAAGGAGTAGCAGGCCTTTGGTAAGCCCTACATTAGATGTTGATGCTGAGACTGGAGAAGTTAATGTCGAGAAAGAGAAAGTTGAAGAAAAGAAGATTGAGAAGAGAGAAAAAGAAGATTCGGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGTCTCGATGCCGGCCCCACCAACCCCGCCGCCACCTCCTCCTTGCCTCTCATCCACTCCGACTCTTCTGCCCCGCCCGCCGCCTCCGCCGTCTCCAACTCCCTTTCCGGTGCCCTCGGTCCTGCTGTTTCAGCTGAACCTCCTGGCGCCCCGACCGGCAACGTCGGCAACCGGAGGAGCTTCCGGCAAACGGTTTGCCGGCATTGGCTCCGCAGCCTCTGCATGAAGGGCGATGCCTGTGGCTTCCTTCATCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTCCGTCTCTATGGCGAGTGCCGCGAGCAGGATTGCGTCTACAAACATACCAACGAAGATATCAAAGAGTGTAATATGTACAAGTTTGGTTTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCAAAGCTGCCTGGACCTCCACCTGCAGTGGAAGAAATCCTTCAGAAAATACAGCATTTAGGTTCATACAATTATGGACCCTCAAACAAATTCTTTTCACAACGTGGAGTTGGCTTATCCCAACAGAATGAAAAATCTCAGTTTCCTCAGAGTCCGGCCCTTGTCACTCAAGGAGTGACAGGAAAACCTTCTACAGCAGAATCTGCTAATGTCCAACAACAGCAAGCTCAGCAGTCTGCACAACAAACCAGCCAGACTCCAATACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAGAACTGCAACATCTTTGCCTCCAGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGGCAAAACTTTTCACTCAAATGGCTTAAGTTATGTGAACTATCCTTCCAGAAAACACGCCATTTGAGGAATCCATATAATGAAAACTTACCAGTAAAGATCAGTAGAGATTGCCAAGAGCTAGAACCCTCTATTGGTGAGCAGCTGGCGTCTTTGCTTTATCTTGAGCCAGATGGTGAACTCATGGCTGTCTCACTAGCAGCAGAATCGAAACGAGAAGAGGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAGTGAGAACCCAGATATTGTCCCGTTTGAGGATAATGAAGAAGAGGAGGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCACCTCAGGGCAGAGGAAGGGGCAGGGGAATCATGTGGCCCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAGGGTTTTCCACCTGGGATGATGGGTCCAGATGGGCTTTCTTATGGTCCTGTTACACCTGACGGATTTCCCATGCCTGACATTTTTGGTATGGCCCCTCGTGGTTTTGGTCCATACGGTCCTAGGTTTTCCGGTGATTTTATGGGTCCTCCAACTGCTATGATGTTTCGGGGACGACCTTCTCAACCTGGGGCCATGTTTCCCCCTAGTGGGTTTGGCATGATGATGGGTCAAGGACGTGGTCCCTTCATGGGTGGGATGGGGGTTGCCGGTACCAACCCAGCTCGACCTGGTCGTCCTGTGGGTGTGTCTCCATTGTATCCACCCCCTGCAGTACCCTCATCTCAGAACATGAATCGAGCTATTAAGAGGGATCAAAGGGGACCGGCCAGTGATCGGAACGATAGATATATTGTGGGTCTGGACCAAAACAAAGGCCCAGAAATGCCAAGTAGTGGACGTGAGGACGAAATGCAATATAAGCAGGGATCAAAAGCCTATTCTGATGAGCAATATGGAATGGGAACCACCTTTAGGAATGAAGAAAGTGAAAGTGAGGATGAGGCACCTCGGCGATCAAGGCATGGAGAGGGTAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCGACTGCAATTTCTAATCAGTGA

Coding sequence (CDS)

ATGGCGGCAACCGATGCATATTCGACAATGGAGGATCCTGATGTACAACAGGCAAATTATGTGCACGAAAATCAAGGCCAACATGGACACCACACTCGTTACCAGTTCCATGAGATGCCCACTCACAATAATCCAAGATTTGCATCAACATCTCAACAAGCTAAGAAGAAGCCTTCTATAGAGGAGCTAATGGGTAATTTCATCAAGGAGGCGAGGAATAGAATGACTCAACTGGAGAACACAATGGCTAGTCATGGGACGGCCATTCAGGACATAGAGACTCAAATTAGTCAGATCTCCAAAGCGATCAATGCCATGCATAAGGGTAAGCTCCTGAGCAACATTGAGGTAAATCCTAGTGAGCATTGTAGGGTGGTGACATTAAGGAGTAGCAGGCCTTTGGTAAGCCCTACATTAGATGTTGATGCTGAGACTGGAGAAGTTAATGTCGAGAAAGAGAAAGTTGAAGAAAAGAAGATTGAGAAGAGAGAAAAAGAAGATTCGGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGTCTCGATGCCGGCCCCACCAACCCCGCCGCCACCTCCTCCTTGCCTCTCATCCACTCCGACTCTTCTGCCCCGCCCGCCGCCTCCGCCGTCTCCAACTCCCTTTCCGGTGCCCTCGGTCCTGCTGTTTCAGCTGAACCTCCTGGCGCCCCGACCGGCAACGTCGGCAACCGGAGGAGCTTCCGGCAAACGGTTTGCCGGCATTGGCTCCGCAGCCTCTGCATGAAGGGCGATGCCTGTGGCTTCCTTCATCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTCCGTCTCTATGGCGAGTGCCGCGAGCAGGATTGCGTCTACAAACATACCAACGAAGATATCAAAGAGTGTAATATGTACAAGTTTGGTTTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCAAAGCTGCCTGGACCTCCACCTGCAGTGGAAGAAATCCTTCAGAAAATACAGCATTTAGGTTCATACAATTATGGACCCTCAAACAAATTCTTTTCACAACGTGGAGTTGGCTTATCCCAACAGAATGAAAAATCTCAGTTTCCTCAGAGTCCGGCCCTTGTCACTCAAGGAGTGACAGGAAAACCTTCTACAGCAGAATCTGCTAATGTCCAACAACAGCAAGCTCAGCAGTCTGCACAACAAACCAGCCAGACTCCAATACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAGAACTGCAACATCTTTGCCTCCAGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGGCAAAACTTTTCACTCAAATGGCTTAAGTTATGTGAACTATCCTTCCAGAAAACACGCCATTTGAGGAATCCATATAATGAAAACTTACCAGTAAAGATCAGTAGAGATTGCCAAGAGCTAGAACCCTCTATTGGTGAGCAGCTGGCGTCTTTGCTTTATCTTGAGCCAGATGGTGAACTCATGGCTGTCTCACTAGCAGCAGAATCGAAACGAGAAGAGGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAGTGAGAACCCAGATATTGTCCCGTTTGAGGATAATGAAGAAGAGGAGGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCACCTCAGGGCAGAGGAAGGGGCAGGGGAATCATGTGGCCCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAGGGTTTTCCACCTGGGATGATGGGTCCAGATGGGCTTTCTTATGGTCCTGTTACACCTGACGGATTTCCCATGCCTGACATTTTTGGTATGGCCCCTCGTGGTTTTGGTCCATACGGTCCTAGGTTTTCCGGTGATTTTATGGGTCCTCCAACTGCTATGATGTTTCGGGGACGACCTTCTCAACCTGGGGCCATGTTTCCCCCTAGTGGGTTTGGCATGATGATGGGTCAAGGACGTGGTCCCTTCATGGGTGGGATGGGGGTTGCCGGTACCAACCCAGCTCGACCTGGTCGTCCTGTGGGTGTGTCTCCATTGTATCCACCCCCTGCAGTACCCTCATCTCAGAACATGAATCGAGCTATTAAGAGGGATCAAAGGGGACCGGCCAGTGATCGGAACGATAGATATATTGTGGGTCTGGACCAAAACAAAGGCCCAGAAATGCCAAGTAGTGGACGTGAGGACGAAATGCAATATAAGCAGGGATCAAAAGCCTATTCTGATGAGCAATATGGAATGGGAACCACCTTTAGGAATGAAGAAAGTGAAAGTGAGGATGAGGCACCTCGGCGATCAAGGCATGGAGAGGGTAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCGACTGCAATTTCTAATCAGTGA

Protein sequence

MAATDAYSTMEDPDVQQANYVHENQGQHGHHTRYQFHEMPTHNNPRFASTSQQAKKKPSIEELMGNFIKEARNRMTQLENTMASHGTAIQDIETQISQISKAINAMHKGKLLSNIEVNPSEHCRVVTLRSSRPLVSPTLDVDAETGEVNVEKEKVEEKKIEKREKEDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEPPGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSNKFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPIQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQGSKAYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ

Homology

[Close]

BLAST of HG10003562 vs. NCBI nr
Match: XP_038889902.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 1361.3 bits (3522), Expect = 0.0e+00
Identity = 686/708 (96.89%), Postives = 693/708 (97.88%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           EDSEGVLSFDFEGGLDAGPTNPAATSSLPL HSDSSAPPAASAVSNSLSGALGPAVSAEP
Sbjct: 2   EDSEGVLSFDFEGGLDAGPTNPAATSSLPLNHSDSSAPPAASAVSNSLSGALGPAVSAEP 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
           PGA TGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 62  PGASTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLGSYNYG SN
Sbjct: 122 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGSSN 181

Query: 346 KFFSQRGVGLSQQNEKSQFPQSPALVTQG-VTGKPSTAESANVQQQQAQQSAQQTSQTPI 405
           KFF+QRGVGLSQQNEKSQFPQ   LVTQG VTGKPS AESANV QQQ QQSAQQTSQTPI
Sbjct: 182 KFFTQRGVGLSQQNEKSQFPQGQPLVTQGVVTGKPSAAESANVPQQQGQQSAQQTSQTPI 241

Query: 406 QSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 465
           QSLSNGQPNQLNRTATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 242 QSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 301

Query: 466 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 525
           SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS
Sbjct: 302 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 361

Query: 526 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEE 585
           FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEE
Sbjct: 362 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEE 421

Query: 586 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPH 645
           KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGI+WPPH
Sbjct: 422 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIVWPPH 481

Query: 646 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDF 705
           MPMGRGARPF GMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDF
Sbjct: 482 MPMGRGARPFPGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDF 541

Query: 706 MGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGVSPLY 765
           MGPPTAMMFRGRPSQPGAMFPP GFGMMMGQGRGPFMGGMG+AGTNP+RPGRPVGVSPLY
Sbjct: 542 MGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGIAGTNPSRPGRPVGVSPLY 601

Query: 766 PPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQGSKAY 825
           PPPAVPSSQNMNRAIKRDQRGPAS+RNDRYIVGLDQNKG EMPSSGR+DEMQYKQGSKAY
Sbjct: 602 PPPAVPSSQNMNRAIKRDQRGPASERNDRYIVGLDQNKGLEMPSSGRDDEMQYKQGSKAY 661

Query: 826 SDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
           SDEQYG+GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 662 SDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 709

[Close]

BLAST of HG10003562 vs. NCBI nr
Match: XP_004141524.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN52613.1 hypothetical protein Csa_008573 [Cucumis sativus])

HSP 1 Score: 1330.5 bits (3442), Expect = 0.0e+00
Identity = 670/709 (94.50%), Postives = 682/709 (96.19%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           EDSEGVLSFDFEGGLDAGPTNPAATSSLP+I+SDSSAPPAASAVSN LSGALGPAVSAEP
Sbjct: 2   EDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAEP 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
            GAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 62  TGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP +EEILQKIQHLGSYNYGPSN
Sbjct: 122 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSN 181

Query: 346 KFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPIQ 405
           KFF+QRGVGLSQQNEKSQFPQ PALVTQGVTGKPS AES NVQQQQ QQSA Q SQTP+Q
Sbjct: 182 KFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPVQ 241

Query: 406 SLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 465
           SLSNGQPNQLNR ATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 242 SLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 301

Query: 466 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 525
           ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLKLCELSF
Sbjct: 302 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELSF 361

Query: 526 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEK 585
           QKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAESKREEEK
Sbjct: 362 QKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEEK 421

Query: 586 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPHM 645
           AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQS GLPPQGRGRGRG+MWPPHM
Sbjct: 422 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPHM 481

Query: 646 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG--PRFSGD 705
           PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYG  PRFSGD
Sbjct: 482 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGD 541

Query: 706 FMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGVSPL 765
           FMGPPTAMMFRGRPSQP AMFPPSGFGMMMGQGRGPFMGGMGVAG NPARPGRPVGVSPL
Sbjct: 542 FMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSPL 601

Query: 766 YPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQGSKA 825
           YPPPAVPSSQNMNRAIKRDQRG     NDRYIVG+DQNKG E+ SSGR++EMQYKQGSKA
Sbjct: 602 YPPPAVPSSQNMNRAIKRDQRGLT---NDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKA 661

Query: 826 YSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
           YSDEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 662 YSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 707

[Close]

BLAST of HG10003562 vs. NCBI nr
Match: XP_008459517.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo])

HSP 1 Score: 1328.2 bits (3436), Expect = 0.0e+00
Identity = 671/710 (94.51%), Postives = 684/710 (96.34%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           EDSEGVLSFDFEGGLDAGPTNPAATSSLPLI+SDSSAPPAASAVSNSLSGALGPAVSAEP
Sbjct: 2   EDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAEP 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
           PGAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 62  PGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLGSYNYGPSN
Sbjct: 122 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPSN 181

Query: 346 KFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPIQ 405
           KFF+QRGVGLSQQNEKSQFPQ PA+ TQGVTGKPS AESANVQQQQ QQSA Q SQTP+Q
Sbjct: 182 KFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQ 241

Query: 406 SLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 465
           +LSNGQPNQLNR ATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD+
Sbjct: 242 NLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDT 301

Query: 466 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 525
           ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 302 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 361

Query: 526 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEK 585
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAESKREEEK
Sbjct: 362 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEK 421

Query: 586 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPHM 645
           AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRG+MWPP M
Sbjct: 422 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGMMWPPQM 481

Query: 646 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG--PRFSGD 705
           P+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG  PRFS D
Sbjct: 482 PIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPTPRFSSD 541

Query: 706 FMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGR-GPFMGGMGVAGTNPARPGRPVGVSP 765
           FMGPPTAMMFRGRPSQPGAMFPP GFGMMMGQGR GPFMGGMGV G NPARPGRPVGVSP
Sbjct: 542 FMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTGANPARPGRPVGVSP 601

Query: 766 LYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQGSK 825
           LYPPPAVPSSQNMNRAIKRDQRG     ND+YIVG+DQNKG E+ SSGR+DEMQYKQGSK
Sbjct: 602 LYPPPAVPSSQNMNRAIKRDQRGLT---NDKYIVGIDQNKGLEIQSSGRDDEMQYKQGSK 661

Query: 826 AYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
           AYSDEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 662 AYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708

[Close]

BLAST of HG10003562 vs. NCBI nr
Match: KAA0039343.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa])

HSP 1 Score: 1313.5 bits (3398), Expect = 0.0e+00
Identity = 668/723 (92.39%), Postives = 682/723 (94.33%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           EDSEGVLSFDFEGGLDAGPTNPAATSSLPLI+SDSSAPPAASAVSNSLSGALGPAVSAEP
Sbjct: 2   EDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAEP 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
           PGAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 62  PGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLGSYNYGPSN
Sbjct: 122 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPSN 181

Query: 346 KFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPIQ 405
           KFF+QRGVGLSQQNEKSQFPQ PA+ TQGVTGKPS AESANVQQQQ QQSA Q SQTP+Q
Sbjct: 182 KFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQ 241

Query: 406 SLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 465
           +LSNGQPNQLNR ATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD+
Sbjct: 242 NLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDT 301

Query: 466 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 525
           ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 302 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 361

Query: 526 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMA------------- 585
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMA             
Sbjct: 362 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMARKKIKYEEMHFGS 421

Query: 586 VSLAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQG 645
             ++AESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQG
Sbjct: 422 SRMSAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQG 481

Query: 646 RGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRG 705
           RGRGRG+MWPP MP+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRG
Sbjct: 482 RGRGRGMMWPPQMPIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRG 541

Query: 706 FGPYG--PRFSGDFMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGR-GPFMGGMGVAGT 765
           FGPYG  PRFS DFMGPPTAMMFRGRPSQPGAMFPP GFGMMMGQGR GPFMGGMGV G 
Sbjct: 542 FGPYGPTPRFSSDFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTGA 601

Query: 766 NPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSS 825
           NPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRG     ND+YIVG+DQNKG E+ SS
Sbjct: 602 NPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGLT---NDKYIVGIDQNKGLEIQSS 661

Query: 826 GREDEMQYKQGSKAYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAI 873
           GR+DEMQYKQGSKAYSDEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAI
Sbjct: 662 GRDDEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAI 721

[Close]

BLAST of HG10003562 vs. NCBI nr
Match: XP_038894441.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 1308.1 bits (3384), Expect = 0.0e+00
Identity = 657/710 (92.54%), Postives = 676/710 (95.21%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNP---AATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVS 225
           EDS+GVLSFDFEGGLDA PTNP   AA SSLPLIHSDSSAPP   A+SNS+ G LGPA +
Sbjct: 2   EDSDGVLSFDFEGGLDAAPTNPAAAAAASSLPLIHSDSSAPP---ALSNSVPGPLGPAPT 61

Query: 226 AEPPGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 285
            E PGAPTGN G+RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR
Sbjct: 62  PEAPGAPTGNAGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 121

Query: 286 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYG 345
           EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP+VEEILQKIQH+GSYN+G
Sbjct: 122 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHIGSYNHG 181

Query: 346 PSNKFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQT 405
           PSNK F QRGVGLSQQNEKSQFPQ PA VTQGV GKPSTAESANVQQ Q QQS QQTSQT
Sbjct: 182 PSNKLFLQRGVGLSQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQPQVQQSTQQTSQT 241

Query: 406 PIQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 465
            IQSLSNGQPNQLNRTATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA
Sbjct: 242 QIQSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 301

Query: 466 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 525
           FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE
Sbjct: 302 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 361

Query: 526 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKRE 585
           LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAE+KRE
Sbjct: 362 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAEAKRE 421

Query: 586 EEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWP 645
           EEKAKGVNPDIG+ENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLP QGRGRGRGIMWP
Sbjct: 422 EEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 481

Query: 646 PHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 705
           PHMPMGRGARPFHGMQGFPPGM+GPDGLSYGPVTP+GFPMPDIFGMAPRGFGPYGPRFSG
Sbjct: 482 PHMPMGRGARPFHGMQGFPPGMIGPDGLSYGPVTPEGFPMPDIFGMAPRGFGPYGPRFSG 541

Query: 706 DFMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGVSP 765
           DFMGPP+AMMFRGRPSQPGAMF PSGFGMMMGQGRGPFMGGMGV GTNPARPGRPVGVSP
Sbjct: 542 DFMGPPSAMMFRGRPSQPGAMFSPSGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVGVSP 601

Query: 766 LYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQGSK 825
           LYPPPAVPS QN+NRA+KRDQRGP SDRNDRYIVGLDQNKG EMP SG +D MQYKQGSK
Sbjct: 602 LYPPPAVPSPQNINRAVKRDQRGPTSDRNDRYIVGLDQNKGQEMPGSGYDDGMQYKQGSK 661

Query: 826 AYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
            YSDEQYGMGTTFRNEESESEDEAPRRSRHGEGK+KRRGSEGDATAIS+Q
Sbjct: 662 GYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKEKRRGSEGDATAISDQ 708

[Close]

BLAST of HG10003562 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 773.9 bits (1997), Expect = 2.0e-222
Identity = 439/702 (62.54%), Postives = 497/702 (70.80%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           ED++G LSFDFEGGLD+GP     T+S+P+      APP      NS S A+  A + + 
Sbjct: 2   EDADG-LSFDFEGGLDSGPVQ--NTASVPV------APP-----ENSSSAAVNVAPTYDH 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
             A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQD
Sbjct: 62  SSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPP VEE+LQKIQ L +YNYG +N
Sbjct: 122 CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TN 181

Query: 346 KFFSQRGVGLS-QQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPI 405
           + +  R V    Q   + Q P         + G+P   ES N+QQQQ QQ  QQ+     
Sbjct: 182 RLYQARNVAPQLQDRPQGQVP---------MQGQPQ--ESGNLQQQQ-QQQPQQSQHQVS 241

Query: 406 QSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 465
           Q+L     +Q NRT+  LP G++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 242 QTLIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFD 301

Query: 466 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 525
           S +NVILIFSVNRTRHFQGCAKM SRIGG + GGNWK+ HGTA YG+NFS+KWLKLCELS
Sbjct: 302 SVENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELS 361

Query: 526 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEE 585
           F KTR+LRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPD ELMA+S+AAE+KREEE
Sbjct: 362 FHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEE 421

Query: 586 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPH 645
           KAKGVNP+  +ENPDIVPFEDNEEEEEEE E EEEE   +S+   PQGRGRGRGIMWPP 
Sbjct: 422 KAKGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQ 481

Query: 646 MPMGRGARPFHGMQGFPPGMMGP-DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 705
           MP+GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR FGPYGPRF GD
Sbjct: 482 MPLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGPRFGGD 541

Query: 706 FMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGVSPL 765
           F GP   MMF GRP Q    FP  G+G MMG GRGP MGGMG A         P G  P+
Sbjct: 542 FRGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMGNA---------PRGGRPM 601

Query: 766 YPPPAV----PSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQ 825
           Y PPA     P   N     + D+RG + D+ ++                          
Sbjct: 602 YYPPATSSARPGPSNRKTPERSDERGVSGDQQNQ-------------------------- 631

Query: 826 GSKAYSDEQYGMGTTFRNEESES--EDEAPRRSRHGEGKKKR 860
              ++  EQ+ +G + RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 662 -DASHDMEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]

BLAST of HG10003562 vs. ExPASy Swiss-Prot
Match: Q0DA50 (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 722.2 bits (1863), Expect = 6.8e-207
Identity = 414/706 (58.64%), Postives = 485/706 (68.70%), Query Frame = 0


Query: 169 EGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEPPGA 228
           +G LSFDFEGGLD     PA     P  HS                G  GP       G 
Sbjct: 3   DGDLSFDFEGGLD---QPPAGGGGGPAPHSSDPGGVGGG------GGGGGPG-----DGG 62

Query: 229 PTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVY 288
             G    R S+RQTVCRHWLR LCMKG+ACGFLHQ+DK+RMP+CRFFR +GECRE DC Y
Sbjct: 63  GHGRGRGRGSYRQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAY 122

Query: 289 KHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSNKFF 348
           KH+ +D+KECNMYK GFCPNGP+CRY+H KLPGPPP VEE+LQKI  + S+     NKF 
Sbjct: 123 KHSYDDVKECNMYKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSF-----NKFN 182

Query: 349 SQRGVGLSQQNEKSQFPQSPALVTQG-------VTGKPSTAESANV------QQQQAQQS 408
             R    +QQ E+ Q PQ   L  Q         T +P+  + A        QQQQ QQ 
Sbjct: 183 QHRHNNYNQQGERPQHPQGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQ 242

Query: 409 AQQTSQTP-----IQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWA 468
            QQ  Q P     +QS+ NG  NQ  R AT LP G SRYFIVKSCNRENLE+SVQQG+WA
Sbjct: 243 QQQQQQKPNTNDQVQSVPNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWA 302

Query: 469 TQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYG 528
           TQRSNEAKLNEAF+S +NVILIFS+NRTR+FQGCAKM SRIGG + GGNWK AHGTAHYG
Sbjct: 303 TQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYG 362

Query: 529 QNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGEL 588
           +NFS++WLKLCELSFQKT HLRNPYN+NLPVKISRDCQELEP IGEQLASLLYLEPD EL
Sbjct: 363 RNFSIQWLKLCELSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSEL 422

Query: 589 MAVSLAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPP 648
            A+ +AAE+K+EEEKAKGV+ D  ++N DIV F+DNEEEEEEESEEEEE +     G   
Sbjct: 423 TAILIAAEAKKEEEKAKGVSADEAADNQDIVLFDDNEEEEEEESEEEEEGN-----GQES 482

Query: 649 QGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAP 708
           QGRGRGRG+MWPP MPM RG  P  G +GFPP M+G DG  +G     GF MPD FG+ P
Sbjct: 483 QGRGRGRGMMWPPQMPMLRGVGPMMGGRGFPPNMIG-DGFGFG----GGFGMPDPFGV-P 542

Query: 709 RGFGPYGPRFSGDFM--GPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAG 768
           RGF P+GPRF GDF   GP   M+F GRP QPG MF P G  MMMG GRGP MGG+G+ G
Sbjct: 543 RGFPPFGPRFPGDFARGGPMPGMVFPGRPPQPGGMF-PMGLEMMMGPGRGPLMGGLGMGG 602

Query: 769 TNPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQ-NKGPEMP 828
             P RP RPVG++P  PPP  P+    NR  KR+QR P  +R DRY    DQ ++G +  
Sbjct: 603 --PGRPNRPVGMAPFMPPPPPPN----NRGTKREQRRPGGERGDRYETTSDQGSRGHDAT 662

Query: 829 -SSGREDEMQYKQGSKAYSDEQYGMGTTFRNEESESEDE-APRRSR 852
            +SG E       G+++ S ++YG  +  R+++SES++E APRRSR
Sbjct: 663 GNSGAE-------GARSQSGDRYGR-SALRDDDSESDEEAAPRRSR 663

[Close]

BLAST of HG10003562 vs. ExPASy Swiss-Prot
Match: B2RR83 (3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-25
Identity = 76/191 (39.79%), Postives = 106/191 (55.50%), Query Frame = 0


Query: 379  PSTAESANVQQQQAQQSAQQTSQTPIQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRE 438
            P  +      Q   + +   +  +P  S S     + +++ +  P    RYFI+KS N  
Sbjct: 1255 PKRSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLR 1314

Query: 439  NLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGG 498
            NLE+S Q+G+W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M S IG   S  
Sbjct: 1315 NLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKS-Q 1374

Query: 499  NWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQL 558
            +W    G+A  G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQL
Sbjct: 1375 DW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQL 1434

Query: 559  ASLLYLEPDGE 570
              L    P GE
Sbjct: 1435 LQLWERLPLGE 1440

[Close]

BLAST of HG10003562 vs. ExPASy Swiss-Prot
Match: Q5R746 (3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-25
Identity = 76/191 (39.79%), Postives = 105/191 (54.97%), Query Frame = 0


Query: 379  PSTAESANVQQQQAQQSAQQTSQTPIQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRE 438
            P         Q   + +   +  +P  S S     + +++ +  P    RYFI+KS N  
Sbjct: 1240 PKRGTEDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLR 1299

Query: 439  NLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGG 498
            NLE+S Q+G+W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M S IG   S  
Sbjct: 1300 NLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKS-Q 1359

Query: 499  NWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQL 558
            +W    G+A  G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQL
Sbjct: 1360 DW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQL 1419

Query: 559  ASLLYLEPDGE 570
              L    P GE
Sbjct: 1420 LQLWERLPLGE 1425

[Close]

BLAST of HG10003562 vs. ExPASy Swiss-Prot
Match: Q9H6S0 (3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-25
Identity = 76/191 (39.79%), Postives = 105/191 (54.97%), Query Frame = 0


Query: 379  PSTAESANVQQQQAQQSAQQTSQTPIQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRE 438
            P         Q   + +   +  +P  S S     + +++ +  P    RYFI+KS N  
Sbjct: 1240 PKRGTEDRSDQSSLKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLR 1299

Query: 439  NLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGG 498
            NLE+S Q+G+W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M S IG   S  
Sbjct: 1300 NLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKS-Q 1359

Query: 499  NWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQL 558
            +W    G+A  G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQL
Sbjct: 1360 DW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQL 1419

Query: 559  ASLLYLEPDGE 570
              L    P GE
Sbjct: 1420 LQLWERLPLGE 1425

[Close]

BLAST of HG10003562 vs. ExPASy TrEMBL
Match: A0A0A0KSR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1)

HSP 1 Score: 1330.5 bits (3442), Expect = 0.0e+00
Identity = 670/709 (94.50%), Postives = 682/709 (96.19%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           EDSEGVLSFDFEGGLDAGPTNPAATSSLP+I+SDSSAPPAASAVSN LSGALGPAVSAEP
Sbjct: 2   EDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAEP 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
            GAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 62  TGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP +EEILQKIQHLGSYNYGPSN
Sbjct: 122 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSN 181

Query: 346 KFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPIQ 405
           KFF+QRGVGLSQQNEKSQFPQ PALVTQGVTGKPS AES NVQQQQ QQSA Q SQTP+Q
Sbjct: 182 KFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPVQ 241

Query: 406 SLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 465
           SLSNGQPNQLNR ATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 242 SLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 301

Query: 466 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 525
           ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLKLCELSF
Sbjct: 302 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELSF 361

Query: 526 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEK 585
           QKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAESKREEEK
Sbjct: 362 QKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEEK 421

Query: 586 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPHM 645
           AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQS GLPPQGRGRGRG+MWPPHM
Sbjct: 422 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPHM 481

Query: 646 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG--PRFSGD 705
           PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYG  PRFSGD
Sbjct: 482 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGD 541

Query: 706 FMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGVSPL 765
           FMGPPTAMMFRGRPSQP AMFPPSGFGMMMGQGRGPFMGGMGVAG NPARPGRPVGVSPL
Sbjct: 542 FMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSPL 601

Query: 766 YPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQGSKA 825
           YPPPAVPSSQNMNRAIKRDQRG     NDRYIVG+DQNKG E+ SSGR++EMQYKQGSKA
Sbjct: 602 YPPPAVPSSQNMNRAIKRDQRGLT---NDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKA 661

Query: 826 YSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
           YSDEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 662 YSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 707

[Close]

BLAST of HG10003562 vs. ExPASy TrEMBL
Match: A0A1S3CAV8 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo OX=3656 GN=LOC103498632 PE=4 SV=1)

HSP 1 Score: 1328.2 bits (3436), Expect = 0.0e+00
Identity = 671/710 (94.51%), Postives = 684/710 (96.34%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           EDSEGVLSFDFEGGLDAGPTNPAATSSLPLI+SDSSAPPAASAVSNSLSGALGPAVSAEP
Sbjct: 2   EDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAEP 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
           PGAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 62  PGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLGSYNYGPSN
Sbjct: 122 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPSN 181

Query: 346 KFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPIQ 405
           KFF+QRGVGLSQQNEKSQFPQ PA+ TQGVTGKPS AESANVQQQQ QQSA Q SQTP+Q
Sbjct: 182 KFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQ 241

Query: 406 SLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 465
           +LSNGQPNQLNR ATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD+
Sbjct: 242 NLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDT 301

Query: 466 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 525
           ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 302 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 361

Query: 526 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEK 585
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAESKREEEK
Sbjct: 362 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEK 421

Query: 586 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPHM 645
           AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRG+MWPP M
Sbjct: 422 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGMMWPPQM 481

Query: 646 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG--PRFSGD 705
           P+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG  PRFS D
Sbjct: 482 PIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPTPRFSSD 541

Query: 706 FMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGR-GPFMGGMGVAGTNPARPGRPVGVSP 765
           FMGPPTAMMFRGRPSQPGAMFPP GFGMMMGQGR GPFMGGMGV G NPARPGRPVGVSP
Sbjct: 542 FMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTGANPARPGRPVGVSP 601

Query: 766 LYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQGSK 825
           LYPPPAVPSSQNMNRAIKRDQRG     ND+YIVG+DQNKG E+ SSGR+DEMQYKQGSK
Sbjct: 602 LYPPPAVPSSQNMNRAIKRDQRGLT---NDKYIVGIDQNKGLEIQSSGRDDEMQYKQGSK 661

Query: 826 AYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
           AYSDEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 662 AYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708

[Close]

BLAST of HG10003562 vs. ExPASy TrEMBL
Match: A0A5A7T8Q5 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001410 PE=4 SV=1)

HSP 1 Score: 1313.5 bits (3398), Expect = 0.0e+00
Identity = 668/723 (92.39%), Postives = 682/723 (94.33%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           EDSEGVLSFDFEGGLDAGPTNPAATSSLPLI+SDSSAPPAASAVSNSLSGALGPAVSAEP
Sbjct: 2   EDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAEP 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
           PGAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 62  PGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLGSYNYGPSN
Sbjct: 122 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPSN 181

Query: 346 KFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPIQ 405
           KFF+QRGVGLSQQNEKSQFPQ PA+ TQGVTGKPS AESANVQQQQ QQSA Q SQTP+Q
Sbjct: 182 KFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPVQ 241

Query: 406 SLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 465
           +LSNGQPNQLNR ATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD+
Sbjct: 242 NLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDT 301

Query: 466 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 525
           ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 302 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 361

Query: 526 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMA------------- 585
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMA             
Sbjct: 362 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMARKKIKYEEMHFGS 421

Query: 586 VSLAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQG 645
             ++AESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQG
Sbjct: 422 SRMSAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQG 481

Query: 646 RGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRG 705
           RGRGRG+MWPP MP+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRG
Sbjct: 482 RGRGRGMMWPPQMPIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRG 541

Query: 706 FGPYG--PRFSGDFMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGR-GPFMGGMGVAGT 765
           FGPYG  PRFS DFMGPPTAMMFRGRPSQPGAMFPP GFGMMMGQGR GPFMGGMGV G 
Sbjct: 542 FGPYGPTPRFSSDFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTGA 601

Query: 766 NPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSS 825
           NPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRG     ND+YIVG+DQNKG E+ SS
Sbjct: 602 NPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGLT---NDKYIVGIDQNKGLEIQSS 661

Query: 826 GREDEMQYKQGSKAYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAI 873
           GR+DEMQYKQGSKAYSDEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAI
Sbjct: 662 GRDDEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAI 721

[Close]

BLAST of HG10003562 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 1300.8 bits (3365), Expect = 0.0e+00
Identity = 658/712 (92.42%), Postives = 674/712 (94.66%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAA-----TSSLPLIHSDSSAPPAASAVSNSLSGALGPA 225
           EDSEGVLSFDFEGGLDA PTNPAA     +SSLPLI SDSSAPP    +SNSL G+LGP 
Sbjct: 2   EDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPP---PLSNSLPGSLGPT 61

Query: 226 VSAEPPGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGE 285
           ++ EP GAPT NVG RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGE
Sbjct: 62  LAPEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGE 121

Query: 286 CREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYN 345
           CREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP+VEEILQKIQHLGSYN
Sbjct: 122 CREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSYN 181

Query: 346 YGPSNKFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTS 405
           YG SNKFFSQRGVGL QQNEKSQFPQ PA VTQGV GKPSTAESANVQQQQ QQ AQQTS
Sbjct: 182 YGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQTS 241

Query: 406 QTPIQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN 465
           QT IQS+SNGQPNQLNRTATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN
Sbjct: 242 QTQIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN 301

Query: 466 EAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKL 525
           EAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKL
Sbjct: 302 EAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKL 361

Query: 526 CELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESK 585
           CELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAESK
Sbjct: 362 CELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESK 421

Query: 586 REEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIM 645
           REEEKAKGVNPDIG+ENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLP QGRGRGRGIM
Sbjct: 422 REEEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIM 481

Query: 646 WPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRF 705
           WPPHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRF
Sbjct: 482 WPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRF 541

Query: 706 SGDFMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGV 765
           SGDFMGPP+AMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMGV GT+PARPGRPVGV
Sbjct: 542 SGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGV 601

Query: 766 SPLYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQG 825
           SPLYPPPAVPS+QN+NRAIKRDQRGP SDRNDRYIVG DQNKG EM SSG ++ MQYKQG
Sbjct: 602 SPLYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQG 661

Query: 826 SKAYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
           SKAY DEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAIS+Q
Sbjct: 662 SKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]

BLAST of HG10003562 vs. ExPASy TrEMBL
Match: A0A1S3BC28 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 1300.8 bits (3365), Expect = 0.0e+00
Identity = 658/712 (92.42%), Postives = 674/712 (94.66%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAA-----TSSLPLIHSDSSAPPAASAVSNSLSGALGPA 225
           EDSEGVLSFDFEGGLDA PTNPAA     +SSLPLI SDSSAPP    +SNSL G+LGP 
Sbjct: 2   EDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPP---PLSNSLPGSLGPT 61

Query: 226 VSAEPPGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGE 285
           ++ EP GAPT NVG RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGE
Sbjct: 62  LAPEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGE 121

Query: 286 CREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYN 345
           CREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP+VEEILQKIQHLGSYN
Sbjct: 122 CREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSYN 181

Query: 346 YGPSNKFFSQRGVGLSQQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTS 405
           YG SNKFFSQRGVGL QQNEKSQFPQ PA VTQGV GKPSTAESANVQQQQ QQ AQQTS
Sbjct: 182 YGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQTS 241

Query: 406 QTPIQSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN 465
           QT IQS+SNGQPNQLNRTATSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN
Sbjct: 242 QTQIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN 301

Query: 466 EAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKL 525
           EAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKL
Sbjct: 302 EAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKL 361

Query: 526 CELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESK 585
           CELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAESK
Sbjct: 362 CELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESK 421

Query: 586 REEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIM 645
           REEEKAKGVNPDIG+ENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLP QGRGRGRGIM
Sbjct: 422 REEEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIM 481

Query: 646 WPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRF 705
           WPPHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRF
Sbjct: 482 WPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRF 541

Query: 706 SGDFMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGV 765
           SGDFMGPP+AMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMGV GT+PARPGRPVGV
Sbjct: 542 SGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGV 601

Query: 766 SPLYPPPAVPSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQG 825
           SPLYPPPAVPS+QN+NRAIKRDQRGP SDRNDRYIVG DQNKG EM SSG ++ MQYKQG
Sbjct: 602 SPLYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQG 661

Query: 826 SKAYSDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 873
           SKAY DEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAIS+Q
Sbjct: 662 SKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]

BLAST of HG10003562 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 773.9 bits (1997), Expect = 1.4e-223
Identity = 439/702 (62.54%), Postives = 497/702 (70.80%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           ED++G LSFDFEGGLD+GP     T+S+P+      APP      NS S A+  A + + 
Sbjct: 2   EDADG-LSFDFEGGLDSGPVQ--NTASVPV------APP-----ENSSSAAVNVAPTYDH 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
             A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQD
Sbjct: 62  SSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPP VEE+LQKIQ L +YNYG +N
Sbjct: 122 CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TN 181

Query: 346 KFFSQRGVGLS-QQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPI 405
           + +  R V    Q   + Q P         + G+P   ES N+QQQQ QQ  QQ+     
Sbjct: 182 RLYQARNVAPQLQDRPQGQVP---------MQGQPQ--ESGNLQQQQ-QQQPQQSQHQVS 241

Query: 406 QSLSNGQPNQLNRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 465
           Q+L     +Q NRT+  LP G++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 242 QTLIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFD 301

Query: 466 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 525
           S +NVILIFSVNRTRHFQGCAKM SRIGG + GGNWK+ HGTA YG+NFS+KWLKLCELS
Sbjct: 302 SVENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELS 361

Query: 526 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEE 585
           F KTR+LRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPD ELMA+S+AAE+KREEE
Sbjct: 362 FHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEE 421

Query: 586 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIMWPPH 645
           KAKGVNP+  +ENPDIVPFEDNEEEEEEE E EEEE   +S+   PQGRGRGRGIMWPP 
Sbjct: 422 KAKGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQ 481

Query: 646 MPMGRGARPFHGMQGFPPGMMGP-DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 705
           MP+GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR FGPYGPRF GD
Sbjct: 482 MPLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGPRFGGD 541

Query: 706 FMGPPTAMMFRGRPSQPGAMFPPSGFGMMMGQGRGPFMGGMGVAGTNPARPGRPVGVSPL 765
           F GP   MMF GRP Q    FP  G+G MMG GRGP MGGMG A         P G  P+
Sbjct: 542 FRGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMGNA---------PRGGRPM 601

Query: 766 YPPPAV----PSSQNMNRAIKRDQRGPASDRNDRYIVGLDQNKGPEMPSSGREDEMQYKQ 825
           Y PPA     P   N     + D+RG + D+ ++                          
Sbjct: 602 YYPPATSSARPGPSNRKTPERSDERGVSGDQQNQ-------------------------- 631

Query: 826 GSKAYSDEQYGMGTTFRNEESES--EDEAPRRSRHGEGKKKR 860
              ++  EQ+ +G + RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 662 -DASHDMEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]

BLAST of HG10003562 vs. TAIR 10
Match: AT1G30460.2 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 276.2 bits (705), Expect = 9.2e-74
Identity = 154/264 (58.33%), Postives = 180/264 (68.18%), Query Frame = 0


Query: 166 EDSEGVLSFDFEGGLDAGPTNPAATSSLPLIHSDSSAPPAASAVSNSLSGALGPAVSAEP 225
           ED++G LSFDFEGGLD+GP     T+S+P+      APP      NS S A+  A + + 
Sbjct: 2   EDADG-LSFDFEGGLDSGPVQ--NTASVPV------APP-----ENSSSAAVNVAPTYDH 61

Query: 226 PGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 285
             A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQD
Sbjct: 62  SSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQD 121

Query: 286 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPAVEEILQKIQHLGSYNYGPSN 345
           CVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPP VEE+LQKIQ L +YNYG +N
Sbjct: 122 CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TN 181

Query: 346 KFFSQRGVGLS-QQNEKSQFPQSPALVTQGVTGKPSTAESANVQQQQAQQSAQQTSQTPI 405
           + +  R V    Q   + Q P         + G+P   ES N+QQQQ QQ  QQ+     
Sbjct: 182 RLYQARNVAPQLQDRPQGQVP---------MQGQPQ--ESGNLQQQQ-QQQPQQSQHQVS 238

Query: 406 QSLSNGQPNQLNRTATSLPPGISR 429
           Q+L     +Q NRT+  LP G++R
Sbjct: 242 QTLIPNPADQTNRTSHPLPQGVNR 238

[Close]

BLAST of HG10003562 vs. TAIR 10
Match: AT4G11970.1 (YTH family protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-30
Identity = 83/192 (43.23%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 412 PNQL---NRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 471
           P+QL        S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 472 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQK 531
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 532 TRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEKAK 591
           T HL+NP N+  PVKISRDCQEL   IGE L  LL    D       L   S R++   K
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL----DANSCDDGLLNSSSRDDYSTK 233

Query: 592 GVNPDIGSENPD 600
               +  S + D
Sbjct: 234 RSRAEPPSSSGD 240

[Close]

BLAST of HG10003562 vs. TAIR 10
Match: AT4G11970.2 (YTH family protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-30
Identity = 83/192 (43.23%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 412 PNQL---NRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 471
           P+QL        S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 472 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQK 531
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 532 TRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEKAK 591
           T HL+NP N+  PVKISRDCQEL   IGE L  LL    D       L   S R++   K
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL----DANSCDDGLLNSSSRDDYSTK 233

Query: 592 GVNPDIGSENPD 600
               +  S + D
Sbjct: 234 RSRAEPPSSSGD 240

[Close]

BLAST of HG10003562 vs. TAIR 10
Match: AT4G11970.3 (YTH family protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-30
Identity = 83/192 (43.23%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 412 PNQL---NRTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 471
           P+QL        S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 472 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQK 531
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 532 TRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEKAK 591
           T HL+NP N+  PVKISRDCQEL   IGE L  LL    D       L   S R++   K
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL----DANSCDDGLLNSSSRDDYSTK 233

Query: 592 GVNPDIGSENPD 600
               +  S + D
Sbjct: 234 RSRAEPPSSSGD 240

The following BLAST results are available for this feature:

BLAST of HG10003562 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889902.1	0.0e+00	96.89	30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid...	[more]
XP_004141524.1	0.0e+00	94.50	30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN...	[more]
XP_008459517.1	0.0e+00	94.51	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucum...	[more]
KAA0039343.1	0.0e+00	92.39	30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var...	[more]
XP_038894441.1	0.0e+00	92.54	30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid...	[more]

BLAST of HG10003562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LNK9	2.0e-222	62.54	30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian...	[more]
Q0DA50	6.8e-207	58.64	Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX...	[more]
B2RR83	1.2e-25	39.79	3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1	[more]
Q5R746	1.6e-25	39.79	3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2	[more]
Q9H6S0	4.5e-25	39.79	3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2	[more]

BLAST of HG10003562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSR6	0.0e+00	94.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1	[more]
A0A1S3CAV8	0.0e+00	94.51	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo O...	[more]
A0A5A7T8Q5	0.0e+00	92.39	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo v...	[more]
A0A5D3C2W1	0.0e+00	92.42	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m...	[more]
A0A1S3BC28	0.0e+00	92.42	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365...	[more]

BLAST of HG10003562 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30460.1	1.4e-223	62.54	cleavage and polyadenylation specificity factor 30	[more]
AT1G30460.2	9.2e-74	58.33	cleavage and polyadenylation specificity factor 30	[more]
AT4G11970.1	1.3e-30	43.23	YTH family protein	[more]
AT4G11970.2	1.3e-30	43.23	YTH family protein	[more]
AT4G11970.3	1.3e-30	43.23	YTH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 600..620
None	No IPR available	COILS	Coil	Coil	coord: 148..168
None	No IPR available	COILS	Coil	Coil	coord: 68..88
None	No IPR available	GENE3D	3.10.590.10	ph1033 like domains	coord: 406..565 e-value: 3.2E-53 score: 181.4
None	No IPR available	GENE3D	4.10.1000.10		coord: 232..295 e-value: 1.5E-15 score: 58.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 601..622
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 806..820
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 821..836
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 579..662
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 837..864
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 745..872
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..421
None	No IPR available	PANTHER	PTHR12357	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	coord: 166..870
None	No IPR available	PANTHER	PTHR12357:SF106	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45	coord: 166..870
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 294..318 e-value: 0.052 score: 22.7 coord: 266..292 e-value: 0.051 score: 22.7 coord: 238..264 e-value: 3.5E-4 score: 29.9
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 238..265 score: 12.83077
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 292..319 score: 12.089031
IPR007275	YTH domain	PFAM	PF04146	YTH	coord: 427..561 e-value: 8.9E-45 score: 153.1
IPR007275	YTH domain	PROSITE	PS50882	YTH	coord: 427..562 score: 58.774452
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 238..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003562.1	HG10003562.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:1990247	N6-methyladenosine-containing RNA binding
molecular_function	GO:0003723	RNA binding