HG10003468 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003468
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr08: 1836949 .. 1839350 (-)
RNA-Seq ExpressionHG10003468
SyntenyHG10003468
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATTTCACGGAGATGGGGAATGAAATGAGGAGCTGGGACGGGGATGGGGAAGCCATCCTCGCCCTCGCTCCCCACCCTATGGACATCTCTACTCCTGGCCCAAATTTTTCAGACCCACAAAAGCTTCCTTCACCTAAGACATCATGGAATCAATCGTATAAAAAGACTAGTGAGAAATTTAACTATTTAATTAAAAAAATTTAAACAGTAGTTATTTAAGTTCATTGTTTTTTGTTTAAAACAAAGCGGAGAATTTTTCCTTGCGAGGAACCCAATCCTCTGCAGGGAATCTTTGCCCTGATCCCCGCAAAATTAAATGAAAAATTTCACGGAGATGGGGGATGAAATGAGGAGCTGGGACGAGGATGGGGAAGTCATCCTCGCCCTCGCTCCTCACCCTATGGACATCTCTACTCCTGACCCAAATGTTTTAGACCCACAAAAGCTTCCTTCACCTAAGACAACCTTGACCTCAATCCTGAGCCTAAAACCGTTTGCAATAATTCATTCTACCCCCAACAAACCAGAAAACTATCCTTGGGGGGATAACTTACAAAGATCCAATGGATACAGAGGAAGTTGAAACAGATGAATAACCTTCCTAGTCTGTACACTTTGGCTCCTTGGTTATGGAAAAATGCCTTTGCATTATGGCCATCTGATCCCCAACAAAGCCAAAAGCGAAAATCTACAGTTGGTATATTAATTGATCTGAGAGTTGAAAAACTTTACTTCCTCTATAAATTATGACAGGTTCTCCTCTCATTCTGTCTTAATAGGGTTGGTAAAGCCTCCATGGTTTACTAACCAACTAAATTAGAAGATAGCTCTTCTTTCTAGGTAGAATTATATGATCTATCACACCTTTGCAATGACCACGGGCTAATATGGGGCGATTTCAATGTGTCGTTTTGGTCTTTTGAGAAGACAAATGACAAGTTGAGAACAAAATATATGCTTCTTTTTAACAAGTTCATTGAGGATAATGCTTTCATTTGGCCTCTGCTATCCGGTAAATATACTTGGTCCAATTTTCGCGAAAGACTGCTGTGACGCTCATAGACCGTTTCCTTGTTTCTGGATCGTGCATGGACAAACACAACAATGCCATTGTCAAGAGACTGCCTTGGTCTACCTCTAACCATTACTTGATCCTTCTTACTCTTGAATCTCAATGTTGGGGCCCTAGATACTTCAAATTTGAGAACATGTGAACATGTGGATGAAATATTATACTTTTAAGCAACATCTTGATAATTGGGGAATAACAATCAACTAAATGGTTGGGCGGGGCACAACTTTATTCAGAAACCAAAAGATCTTAAGATAGCTCTCAATGCTTAGAACTAAGACATTTTTGGCTGCACCAAGGTTAAAAAAACATTTTTTCGAATGAGCTTGATCGCTTTGACAACTTAGCTTGAAAAACCGGAATTTGACGTGTACAGAAATCAAAGAGAAAGGATATCAAAGAGGTAATCGGGGCTCGTACTTACAAAGAAAAGATCATGTAGTGGCAAAAATGCAAACTAAAATGGGCCACTAAAGGTGACAAAAATATCTACTTCCATAGATGTCATGCAAAAGGAAGAACATAGTGGTTGAAATCAAGGGATGGTAAGAGTCTTGTTACATACCATGAAATTGAGGCCGAATTTATTGATTTCTTCGAAAACTTATACACCAAAAGACCAAACAATAGGGCCTTCCACCTATTGAAATTTGGGACCCGTTCCTCTCAAGCCATGGAGCTCGAAGTCTCATTTACTGGAAGAGAAATATGGAGAGCCATATATGATTTGGGGAACAACAAGTCTCCTGGACCCGACAAATACACCACTAAATTCTTCAAAAAGCTTTGGAACATCCTTAAGTCTGATATTAAGAGGGTGTTCCATGACTTTTTTGAGAATGCTATCATCAACGTGAATCTCAACAAGACTTATATCTTCCTCACCCCCAAGAAAATTGATGCTAAAGTTGTGGACTATAGACCTATCAACATCACCACTTGCCTCTACAAAGTCATTGCTAGAGTCTTATTAGAAAGACCTAAGAAAGTGCTCCTCTCACTATTACAGAAAACCAAATGGTATTTGTGGCGGATCGACAAATTATTGATACATCCTTGATTGCTAATGAACTGATTGATAAATACTCGAGATTTAAACAATGTTGTGAGCATTATAGGCAATGGAGATTCCATTTCCTTTTGGAACGATAGTTGGGTTGATTCATCTCCTCTCAAGGAAGCCTTCCCCAGACTTTATGCTCTCACAAATAGTAAGAATTCAACCATTGCCGATTGTTGGAATAGTGAGAATGCTTCTTGGAATCTTGGCTTGAGAAGACACCTCACCGAAGCCGAGATCATGGAGTGGTCCATTCTATCTTGA

mRNA sequence

ATGAAGAATTTCACGGAGATGGGGAATGAAATGAGGAGCTGGGACGGGGATGGGGAAGCCATCCTCGCCCTCGCTCCCCACCCTATGGACATCTCTACTCCTGGCCCAAATTTTTCAGACCCACAAAAGCTTCCTTCACCTAAGACATCATGGAATCAATCGTATAAAAAGACTAGCAATGGAGATTCCATTTCCTTTTGGAACGATAGTTGGGTTGATTCATCTCCTCTCAAGGAAGCCTTCCCCAGACTTTATGCTCTCACAAATAGTAAGAATTCAACCATTGCCGATTGTTGGAATAGTGAGAATGCTTCTTGGAATCTTGGCTTGAGAAGACACCTCACCGAAGCCGAGATCATGGAGTGGTCCATTCTATCTTGA

Coding sequence (CDS)

ATGAAGAATTTCACGGAGATGGGGAATGAAATGAGGAGCTGGGACGGGGATGGGGAAGCCATCCTCGCCCTCGCTCCCCACCCTATGGACATCTCTACTCCTGGCCCAAATTTTTCAGACCCACAAAAGCTTCCTTCACCTAAGACATCATGGAATCAATCGTATAAAAAGACTAGCAATGGAGATTCCATTTCCTTTTGGAACGATAGTTGGGTTGATTCATCTCCTCTCAAGGAAGCCTTCCCCAGACTTTATGCTCTCACAAATAGTAAGAATTCAACCATTGCCGATTGTTGGAATAGTGAGAATGCTTCTTGGAATCTTGGCTTGAGAAGACACCTCACCGAAGCCGAGATCATGGAGTGGTCCATTCTATCTTGA

Protein sequence

MKNFTEMGNEMRSWDGDGEAILALAPHPMDISTPGPNFSDPQKLPSPKTSWNQSYKKTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEIMEWSILS
Homology
[Close]
BLAST of HG10003468 vs. NCBI nr
Match: KAA0037030.1 (hypothetical protein E6C27_scaffold86G001220 [Cucumis melo var. makuwa] >TYK06620.1 hypothetical protein E5676_scaffold453G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 60  NGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEI 119
           NG+S SFWND WV     K AFP+ +AL   K  +IA CWN +  +W+LGLR +L + E+
Sbjct: 130 NGESTSFWNDFWV-----KNAFPQPFALFGQKEVSIARCWNVDYEAWDLGLRPNLNDDEV 189

Query: 120 MEWSILS 127
            EWSI S
Sbjct: 190 NEWSIYS 191

[Close]
BLAST of HG10003468 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 57  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTE 116
           K  NG S SFW+  W  +SPL   +PRLYAL+ +K S+I D WN+    W+L  RR L E
Sbjct: 833 KIKNGRSFSFWHGHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLRE 892

Query: 117 AEIMEWSIL 126
            E+  W+ L
Sbjct: 893 WELPLWAEL 901

[Close]
BLAST of HG10003468 vs. NCBI nr
Match: KAE8725177.1 (hypothetical protein F3Y22_tig00009009pilonHSYRG00196 [Hibiscus syriacus])

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 57   KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIAD--CWNSENASWNLGLRRHL 116
            +  NG SI FWND W ++S LKE FPR+YAL+ +K   + D  C+++   SWN+ LRR+L
Sbjct: 2221 QVGNGRSIEFWNDIWANNSTLKEQFPRIYALSINKTGKVVDFGCYDNNCWSWNICLRRNL 2280

Query: 117  TEAEIMEW 123
             + E+ +W
Sbjct: 2281 CDWELDQW 2288

[Close]
BLAST of HG10003468 vs. NCBI nr
Match: KAE8684356.1 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Hibiscus syriacus])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 57  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCW--NSENASWNLGLRRHL 116
           KT NGDSI FW+D+W+D   L+  FPRL+AL+ +K   I D    NS +  W++ +RR+L
Sbjct: 412 KTGNGDSIRFWHDAWLDGVSLRARFPRLFALSINKEGKITDFRKNNSSSYFWDIPMRRNL 471

Query: 117 TEAEIMEWSIL 126
            + E+M+W+ L
Sbjct: 472 ADWELMQWNEL 482

[Close]
BLAST of HG10003468 vs. NCBI nr
Match: KAA0054164.1 (putative phosphoinositide phosphatase SAC9 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 57  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTE 116
           K SNG  I FW+D WV SS LK+ FP LY +    + ++AD W+  + SW+L LRR L E
Sbjct: 12  KLSNGSRIGFWSDFWVGSSSLKDLFPSLYRIALLPHGSVADHWDFVSLSWSLSLRRSLKE 71

Query: 117 AEIMEWS 124
            EI ++S
Sbjct: 72  EEIADFS 78

[Close]
BLAST of HG10003468 vs. ExPASy TrEMBL
Match: A0A5D3C5L4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00900 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.9e-10
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 60  NGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTEAEI 119
           NG+S SFWND WV     K AFP+ +AL   K  +IA CWN +  +W+LGLR +L + E+
Sbjct: 130 NGESTSFWNDFWV-----KNAFPQPFALFGQKEVSIARCWNVDYEAWDLGLRPNLNDDEV 189

Query: 120 MEWSILS 127
            EWSI S
Sbjct: 190 NEWSIYS 191

[Close]
BLAST of HG10003468 vs. ExPASy TrEMBL
Match: A0A6A3C9D3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009009pilonHSYRG00196 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-09
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 57   KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIAD--CWNSENASWNLGLRRHL 116
            +  NG SI FWND W ++S LKE FPR+YAL+ +K   + D  C+++   SWN+ LRR+L
Sbjct: 2221 QVGNGRSIEFWNDIWANNSTLKEQFPRIYALSINKTGKVVDFGCYDNNCWSWNICLRRNL 2280

Query: 117  TEAEIMEW 123
             + E+ +W
Sbjct: 2281 CDWELDQW 2288

[Close]
BLAST of HG10003468 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-09
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 57  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTE 116
           K  NG S SFW+  W  +SPL   +PRLYAL+ +K S+I D WN+    W+L  RR L E
Sbjct: 833 KIKNGRSFSFWHGHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLRE 892

Query: 117 AEIMEWSIL 126
            E+  W+ L
Sbjct: 893 WELPLWAEL 901

[Close]
BLAST of HG10003468 vs. ExPASy TrEMBL
Match: A0A6A2YY54 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111132pilonHSYRG00117 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.8e-09
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 57  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCW--NSENASWNLGLRRHL 116
           KT NGDSI FW+D+W+D   L+  FPRL+AL+ +K   I D    NS +  W++ +RR+L
Sbjct: 412 KTGNGDSIRFWHDAWLDGVSLRARFPRLFALSINKEGKITDFRKNNSSSYFWDIPMRRNL 471

Query: 117 TEAEIMEWSIL 126
            + E+M+W+ L
Sbjct: 472 ADWELMQWNEL 482

[Close]
BLAST of HG10003468 vs. ExPASy TrEMBL
Match: A0A5A7UG67 (Putative phosphoinositide phosphatase SAC9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00930 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.8e-09
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 57  KTSNGDSISFWNDSWVDSSPLKEAFPRLYALTNSKNSTIADCWNSENASWNLGLRRHLTE 116
           K SNG  I FW+D WV SS LK+ FP LY +    + ++AD W+  + SW+L LRR L E
Sbjct: 12  KLSNGSRIGFWSDFWVGSSSLKDLFPSLYRIALLPHGSVADHWDFVSLSWSLSLRRSLKE 71

Query: 117 AEIMEWS 124
            EI ++S
Sbjct: 72  EEIADFS 78

The following BLAST results are available for this feature:
BLAST of HG10003468 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037030.11.8e-0950.75hypothetical protein E6C27_scaffold86G001220 [Cucumis melo var. makuwa] >TYK0662... [more]
TYK06777.11.6e-0846.38LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAE8725177.11.6e-0845.59hypothetical protein F3Y22_tig00009009pilonHSYRG00196 [Hibiscus syriacus][more]
KAE8684356.12.0e-0845.07Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Hibis... [more]
KAA0054164.12.0e-0847.76putative phosphoinositide phosphatase SAC9 [Cucumis melo var. makuwa][more]
BLAST of HG10003468 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10003468 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C5L48.9e-1050.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6A3C9D37.5e-0945.59Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009009pilon... [more]
A0A5D3C4J17.5e-0946.38LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A6A2YY549.8e-0945.07Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Hibi... [more]
A0A5A7UG679.8e-0947.76Putative phosphoinositide phosphatase SAC9 OS=Cucumis melo var. makuwa OX=119469... [more]
BLAST of HG10003468 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..55
NoneNo IPR availablePANTHERPTHR36617:SF3SUBFAMILY NOT NAMEDcoord: 59..123
NoneNo IPR availablePANTHERPTHR36617PROTEIN, PUTATIVE-RELATEDcoord: 59..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003468.1HG10003468.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0010467 gene expression
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0016070 RNA metabolic process
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0098796 membrane protein complex
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding