HG10003452 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003452
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAA_kinase domain-containing protein
LocationChr08: 1551346 .. 1551642 (-)
RNA-Seq ExpressionHG10003452
SyntenyHG10003452
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGTCACACGCCTAGGAAATGTCACTAGGGACAGATCTCTGTTGCTCTATGCTCTACGTGTAGGCCTTTCGGTTGACGTCGAGCAGGTGATTCGTGCATCGATTCGACGGACTGCTAGTGGTTTGACCACCGATGGTCTTGGACACCCATCTTTGATCACTGAGCTCTGTCGGAGAGCTGAGGTTGAGATAGACCATGGAGAGCAAAAGATGGGTCCTACGTCAGTTCTCGATAAGACATACATCATTGCCTTTCGCGGTCATCTAAACCAAGGGGCGAAGCACTATTGGTGA

mRNA sequence

ATGCCAGTCACACGCCTAGGAAATGTCACTAGGGACAGATCTCTGTTGCTCTATGCTCTACGTGTAGGCCTTTCGGTTGACGTCGAGCAGGTGATTCGTGCATCGATTCGACGGACTGCTAGTGGTTTGACCACCGATGGTCTTGGACACCCATCTTTGATCACTGAGCTCTGTCGGAGAGCTGAGGTTGAGATAGACCATGGAGAGCAAAAGATGGGTCCTACGTCAGTTCTCGATAAGACATACATCATTGCCTTTCGCGGTCATCTAAACCAAGGGGCGAAGCACTATTGGTGA

Coding sequence (CDS)

ATGCCAGTCACACGCCTAGGAAATGTCACTAGGGACAGATCTCTGTTGCTCTATGCTCTACGTGTAGGCCTTTCGGTTGACGTCGAGCAGGTGATTCGTGCATCGATTCGACGGACTGCTAGTGGTTTGACCACCGATGGTCTTGGACACCCATCTTTGATCACTGAGCTCTGTCGGAGAGCTGAGGTTGAGATAGACCATGGAGAGCAAAAGATGGGTCCTACGTCAGTTCTCGATAAGACATACATCATTGCCTTTCGCGGTCATCTAAACCAAGGGGCGAAGCACTATTGGTGA

Protein sequence

MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRRAEVEIDHGEQKMGPTSVLDKTYIIAFRGHLNQGAKHYW
Homology
[Close]
BLAST of HG10003452 vs. NCBI nr
Match: TYK21755.1 (uncharacterized protein E5676_scaffold1721G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-12
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
          M VT+  NVT DR+LLL+ L  GLS+DV ++I  SI+ T    TT GL HPSLITELCR+
Sbjct: 1  MSVTQFSNVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELCRQ 60

Query: 61 AEVEIDHGEQKMGPTSVLDKTYIIAFRGHL 91
          A VE    ++ +   + L+++++ AF+G +
Sbjct: 61 AGVEFGIDKEMIFSRAFLNRSFVSAFQGRV 90

[Close]
BLAST of HG10003452 vs. NCBI nr
Match: KAA0047231.1 (uncharacterized protein E6C27_scaffold908G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.3e-12
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
          M VTR  +VT DR+LLL+ L  GLS+DV ++I  SI+ T    TT GL HPSLITEL R+
Sbjct: 1  MSVTRFSDVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELYRQ 60

Query: 61 AEVEIDHGEQKMGPTSVLDKTYIIAFRGHL 91
          A VE    ++ +   + L+++++ AF+GH+
Sbjct: 61 AGVEFGIDKEMIFSRAFLNRSFVSAFQGHV 90

[Close]
BLAST of HG10003452 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 9.3e-09
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 0 

Query: 1   MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
           +PV    +VT++R++LLYA+    SVDV +VI+ S+        T GLGH SLIT LCR 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  AEVEIDHGEQKMGPTSVLDKTYIIAFRG 89
             V  +  E+ + P  ++DK++I+   G
Sbjct: 239 EGVVWNEKEELVDPKPIMDKSFIMEIPG 266

[Close]
BLAST of HG10003452 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 1   MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
           +PV    +VT++R++LLYA+    SVDV +VI  S+        T GLGH SLIT LCR 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  AEVEIDHGEQKMGPTSVLDKTYIIAFRG 89
             V  +  E+ + P  ++DK +I+   G
Sbjct: 239 EGVVWNEKEELVDPKPIMDKNFIMGIPG 266

[Close]
BLAST of HG10003452 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 1   MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
           +PV    +VT++R++LLYA+    SVDV +VI  S+        T GLGH SLIT LCR 
Sbjct: 117 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 176

Query: 61  AEVEIDHGEQKMGPTSVLDKTYIIAFRG 89
             V  +  E+ + P  ++DK +I+   G
Sbjct: 177 EGVVWNEKEELVDPKPIMDKNFIMGIPG 204

[Close]
BLAST of HG10003452 vs. ExPASy TrEMBL
Match: A0A5D3DE04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00020 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.7e-13
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
          M VT+  NVT DR+LLL+ L  GLS+DV ++I  SI+ T    TT GL HPSLITELCR+
Sbjct: 1  MSVTQFSNVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELCRQ 60

Query: 61 AEVEIDHGEQKMGPTSVLDKTYIIAFRGHL 91
          A VE    ++ +   + L+++++ AF+G +
Sbjct: 61 AGVEFGIDKEMIFSRAFLNRSFVSAFQGRV 90

[Close]
BLAST of HG10003452 vs. ExPASy TrEMBL
Match: A0A5A7U0V9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00220 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 1  MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
          M VTR  +VT DR+LLL+ L  GLS+DV ++I  SI+ T    TT GL HPSLITEL R+
Sbjct: 1  MSVTRFSDVTNDRALLLFVLASGLSIDVRKIIFHSIKLTYRTPTTYGLRHPSLITELYRQ 60

Query: 61 AEVEIDHGEQKMGPTSVLDKTYIIAFRGHL 91
          A VE    ++ +   + L+++++ AF+GH+
Sbjct: 61 AGVEFGIDKEMIFSRAFLNRSFVSAFQGHV 90

[Close]
BLAST of HG10003452 vs. ExPASy TrEMBL
Match: A0A0A0KER1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-09
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 0 

Query: 1   MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
           +PV    +VT++R++LLYA+    SVDV +VI+ S+        T GLGH SLIT LCR 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  AEVEIDHGEQKMGPTSVLDKTYIIAFRG 89
             V  +  E+ + P  ++DK++I+   G
Sbjct: 239 EGVVWNEKEELVDPKPIMDKSFIMEIPG 266

[Close]
BLAST of HG10003452 vs. ExPASy TrEMBL
Match: A0A5D3BBY3 (Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00020 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 1   MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
           +PV    +VT++R++LLYA+    SVDV +VI  S+        T GLGH SLIT LCR 
Sbjct: 179 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 238

Query: 61  AEVEIDHGEQKMGPTSVLDKTYIIAFRG 89
             V  +  E+ + P  ++DK +I+   G
Sbjct: 239 EGVVWNEKEELVDPKPIMDKNFIMGIPG 266

[Close]
BLAST of HG10003452 vs. ExPASy TrEMBL
Match: A0A1S3C7Y0 (uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 1   MPVTRLGNVTRDRSLLLYALRVGLSVDVEQVIRASIRRTASGLTTDGLGHPSLITELCRR 60
           +PV    +VT++R++LLYA+    SVDV +VI  S+        T GLGH SLIT LCR 
Sbjct: 117 LPVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRN 176

Query: 61  AEVEIDHGEQKMGPTSVLDKTYIIAFRG 89
             V  +  E+ + P  ++DK +I+   G
Sbjct: 177 EGVVWNEKEELVDPKPIMDKNFIMGIPG 204

The following BLAST results are available for this feature:
BLAST of HG10003452 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK21755.11.8e-1246.67uncharacterized protein E5676_scaffold1721G00020 [Cucumis melo var. makuwa][more]
KAA0047231.15.3e-1246.67uncharacterized protein E6C27_scaffold908G00220 [Cucumis melo var. makuwa][more]
KGN46897.19.3e-0939.77hypothetical protein Csa_020731 [Cucumis sativus][more]
KAA0033353.11.2e-0839.77putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... [more]
XP_008458668.11.2e-0839.77PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo][more]
BLAST of HG10003452 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10003452 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DE048.7e-1346.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0V92.5e-1246.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KER14.5e-0939.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149380 PE=4 SV=1[more]
A0A5D3BBY35.9e-0939.77Putative S-locus lectin protein kinase family protein OS=Cucumis melo var. makuw... [more]
A0A1S3C7Y05.9e-0939.77uncharacterized protein LOC103497996 OS=Cucumis melo OX=3656 GN=LOC103497996 PE=... [more]
BLAST of HG10003452 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003452.1HG10003452.1mRNA