HG10003270 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003270
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	BEST Arabidopsis thaliana protein match is: embryo defective 1303 .
Location	Chr11: 19538416 .. 19542040 (+)
RNA-Seq Expression	HG10003270
Synteny	HG10003270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGCTTACTACAAATTCTGGTGCCATGCTACCTCTTCTACCCCCAGGTACAAGCAACTAATTTCTATATCGTTTCTTGATTTGATGTAAGCGGAAATGAATGGTTTTAATTATAACTAAAAGGATGAGTACAAGAGAAGGAAAGCAGGATAATGCATTTCCCCTAACCCAGAAAGGAGCCTGTAAAAAGCAAACTGTATCTAGTTTGATTGGAGAAGTAAGTAAATGTCAGAATTCCTACTATGTCACTCAGCATGAGGTGCTGTACTGTATACAATCCAAGAAATTGTCGGAAGTTTAAAAGATATCTTGCAGGATTATTACTGTTCTTTTCAATCTAAAGTTAGCCATAAAATAGCTTTGGAAGGAATTCTATGTAGAACTTACCTTTCTTTTCAGCCATCAGCCCACATAAACTTCTGAGGATGAGGGATCTCACGTCATTCAGGAAGCTCTAAGAACCATTATTTTGACATTATGAAAATTCCAGCTTTAAGTGGCAACTCAGTAGAGGAATAGATGACATATGGGGAAAAGTTGACTTTGTGTGGACCCCTTTCTAATCAGGTTAGCTATGTTGGTTGGGGTTTTTGTTTAGTTAGGTAGACAAGAGCAGACTTGCAAGAGTATGCCACCAAATTATCAAAATTCTGCAAGGAGATGTTACATGCTCTTATACTAATAACACCTATATTGGTTTATTAAGTTTGGGAACAAATAATTTAGTTGGTATAGATCCACCCAAGCAATCTGATTGTGGAGATAACATTGCTGTGCACTGTGCTCAAGTGTGTTTATATGAAAGAAGGATATATATATATAGTACGCGTGTGTGTGAATAAATAAATTTTAATGACAGTAATAGATAACTGTTGTAGAAATAATTGTTTCTGGTGCTTGAAGCTGGCTCTTGTCTCACATGGATACATGTATGTGGTACATCCAAGTTACAGCTTTTCATGGTTTTGAGATCCCAATATTTAGTGAGCTGATGCAAATTGGAAATTTTATCGATGGACGATAACATCTTGAACATTCTTTGGAATATATATTTATTGACACTCGGTTGATTGGAGCAGTCAATTTTTGTTAATGGTTGCTAATTGTGATAAGTTAAGATTTGTTAAATGCATCAATCTTTGTAACATATATGTACTTTTCATGTAAACCCTATGTTGTCCTCCGTGCCTTTAAGTTCAAATATATTTTTGCTCAGACTAAAAGAGGGATTAGCTTATGTTTTCTTTTAAATTTGAAGACCATTGCAGTTACATGGTTTCTTATGCAGTTAAAAAGTATTGGTTTTTGTTTAAATTAATCTTCTTTTACCATTAATTCGGGAAATTTTTTTTGATCTCTAGTTGTAATATTGTCTTTGTAAAATAGTGGGTCAGCATTGGGGAAGAAGGAATGCCAAAGACTTCTCTCTTAGACGGTATAGTTCTCAACTTCAAACTCCTAATGGGAGGAGGCAGTCACTGTTTGCTAAAGCAGGACCAGTATTTCTCAAACCAATTCCATCTACTGGGACGAATGGAGGCGTTCTATGTTCTAGTAGAAAGAACAATGCTTTCATATGTTTTGCTGCTTTGGTAAGTTGGTTCTATTTTCTTTCGGCATTGAGTTCATCTGTTCTCTTTTTACTTGAAGCCCCGCTGGTAATATTTCTTTATATTCAGAAACGTTATTGTACAATCTTAAGCTTAGATGCCAAGGTAGATTTTCTGAAGGCTTCCCAATTTGTTGAAATGAATTGGGGGATTTGGATGGTGAGGAATTATAGAATTTTGAGAGGGAGGAGACGTATGTGAAGTAGTTGTTCCCTTGATTTGGGTCTCGATGGCTAAGGTCTTTAGTTGCGGCTTATTCTTTTAGATTAGAGCCCCTTTTTGTACTTCTTTGGCTCTGTTTTTTTTATGCCCCTGTAAATGATAAAGCTGGATTTATTTATCAATAGAGGTACTGAGTCAAGGGAAGATTTAGAGAGCTTTCCCTCTCTCCCAAACACAATTCTTACAGAATGAGTTGAGCAAATAGATTACCCCTCCAGCTCTTTTCTTCTCCCTATATAATTCTTGACTCACTGCTCACGTCTATGCGATGTTTGTTGGTTTGTTTGTTTTTTTTTATAATAAACATTTCATTGATGAATGAAAAAAATCCAAAGAGTACATTAAGGATACATGGTCGAGAAACATGATAAAACATTGCATAGTTTAAAAAAAAAAACTCAAGGTGTAAGCCTCATTAGCTTTCTAAAACTATGCAATGTTTTAAAATGCTATTGAGGCTTACACCTTGAGGTAAGACTCTAACTTTTAACCTTGAGACTTATGCCTTTGCAAAAACGCACAGAGGCTTAAAATCTGCCTTGTCTAATGGTCAAGAAAATAATAGTGGCCTCATTCTTAAAAAATATAAAGGTTTGAGCTAGGATAATTTGAACTATTACTACTTTTGCTGCTTTGACTTTAAGAACATTGAAGACAAAAATTTATAGTATAAATAAATAAATTCTATTAATGATAATAGTAGTGATGTTCAAGATATCCTTTTAAAATTTTTGATCGAGTGATAATTGTGGAGGTGAATTTTTTTCACTATTATATGACTATCATGTTTAACAATTATCTGATCATACCAATTTAGGATTTGCAAAGTGTTTTTAATTCAATTTGAAGCTTACCCCTCATCTCTTCAAGATGAAAAGCTTCAAGGGCGTTTTGGCCTTTCAAAACATTGTCTATTTCATTCATAGACCCACCCTCCAGTCGTCCTACATACAATTGGTATAATCTTTCATATTTTCAATGAAAGTTTGGTTTCTTGAAAAAAAAAAGGGAAAAACTGTTAGGAACGAGAAATAGTTGAAGCCACACAATTCTTATTTACCTAGTCATTTAGTATCTGCCTGGAATGAGTGTTTGAAGCAACATTACAGACTGCGTGATCGATTTTGAAATGGATTTGAGTTCTTTTGTTAAATAATTAATATAAAGAACTAAATAGGTTTTTAGACATGGTTAAAGACTTAAACAGAATATTTGAAAGAGGGATTAAAAAACAAAAATATATTAATGGCGTTGTCTCTGTGCAGAATGCTAGATGTGCAGCGGAGCAGACCCAGACCGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCTGGTAACAATCACTTGCAGATTCTATGAATAATAGTAACTTTTTAACATCAATCTTCCTAGCAGTAAAGTTGCATATGCACAGTTATCACCATCCAACCAGACTGTTACTCCTTGCAAATAACATGCCTCGCTATGTTCTTACCTATTTGTCTCTTCCTAACGCGCGCACACGGCCTTGTCCTAGGCTATCATAATGTTGGCTGTTGCTAAGCCTTATTTTCAACCTTACATTGTGTTACCTGAAACTAAAATTGCAGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGTGGTGGAGGAGGTGGCGGCGGTGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTCTAAAAGATAAAGAAAGCGAAGGACCATATCAGAATGATCGGAGAAGATAA

mRNA sequence

ATGGAGATGCTTACTACAAATTCTGGTGCCATGCTACCTCTTCTACCCCCAGTGGGTCAGCATTGGGGAAGAAGGAATGCCAAAGACTTCTCTCTTAGACGGTATAGTTCTCAACTTCAAACTCCTAATGGGAGGAGGCAGTCACTGTTTGCTAAAGCAGGACCAGTATTTCTCAAACCAATTCCATCTACTGGGACGAATGGAGGCGTTCTATGTTCTAGTAGAAAGAACAATGCTTTCATATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAGACCGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGTGGTGGAGGAGGTGGCGGCGGTGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTCTAAAAGATAAAGAAAGCGAAGGACCATATCAGAATGATCGGAGAAGATAA

Coding sequence (CDS)

ATGGAGATGCTTACTACAAATTCTGGTGCCATGCTACCTCTTCTACCCCCAGTGGGTCAGCATTGGGGAAGAAGGAATGCCAAAGACTTCTCTCTTAGACGGTATAGTTCTCAACTTCAAACTCCTAATGGGAGGAGGCAGTCACTGTTTGCTAAAGCAGGACCAGTATTTCTCAAACCAATTCCATCTACTGGGACGAATGGAGGCGTTCTATGTTCTAGTAGAAAGAACAATGCTTTCATATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAGACCGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGTGGTGGAGGAGGTGGCGGCGGTGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTCTAAAAGATAAAGAAAGCGAAGGACCATATCAGAATGATCGGAGAAGATAA

Protein sequence

MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKPIPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

Homology

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BLAST of HG10003270 vs. NCBI nr
Match: XP_008448993.1 (PREDICTED: uncharacterized protein LOC103490999 [Cucumis melo] >XP_016900649.1 PREDICTED: uncharacterized protein LOC103490999 [Cucumis melo])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 161/174 (92.53%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTTNS  MLPLLPPVGQHWGR  AKD  LRRYSSQ QTPNGRRQSLFAKAGPVFLKP
Sbjct: 1   MEMLTTNSAVMLPLLPPVGQHWGRMKAKDLPLRRYSSQHQTPNGRRQSLFAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120
           IPSTGT GG+LCSSRKN+ FIC AALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  IPSTGTKGGILCSSRKNSTFICLAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQ+DRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQDDRRR 174

[Close]

BLAST of HG10003270 vs. NCBI nr
Match: XP_038905031.1 (protein YELLOW LEAF 1, choloroplastic-like isoform X2 [Benincasa hispida] >XP_038905032.1 protein YELLOW LEAF 1, choloroplastic-like isoform X2 [Benincasa hispida] >XP_038905033.1 protein YELLOW LEAF 1, choloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 162/174 (93.10%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTT+SGAMLPLLPPVGQH GR  AKD SLRRYSSQLQT NGRRQS+FAKAGPVFLKP
Sbjct: 1   MEMLTTSSGAMLPLLPPVGQHRGRMKAKDLSLRRYSSQLQTLNGRRQSVFAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120
           IPSTG  GG LCSSR+NNAF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  IPSTGMKGGDLCSSRRNNAFMCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 174

[Close]

BLAST of HG10003270 vs. NCBI nr
Match: XP_038905028.1 (uncharacterized protein LOC120091196 isoform X1 [Benincasa hispida] >XP_038905029.1 uncharacterized protein LOC120091196 isoform X1 [Benincasa hispida] >XP_038905030.1 uncharacterized protein LOC120091196 isoform X1 [Benincasa hispida])

HSP 1 Score: 308.1 bits (788), Expect = 4.7e-80
Identity = 161/191 (84.29%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPP-----------------VGQHWGRRNAKDFSLRRYSSQLQTPN 60
           MEMLTT+SGAMLPLLPP                 +GQH GR  AKD SLRRYSSQLQT N
Sbjct: 1   MEMLTTSSGAMLPLLPPGHERKAGKCSFPTQKGTLGQHRGRMKAKDLSLRRYSSQLQTLN 60

Query: 61  GRRQSLFAKAGPVFLKPIPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAP 120
           GRRQS+FAKAGPVFLKPIPSTG  GG LCSSR+NNAF+CFAALNARCAAEQTQTVTREAP
Sbjct: 61  GRRQSVFAKAGPVFLKPIPSTGMKGGDLCSSRRNNAFMCFAALNARCAAEQTQTVTREAP 120

Query: 121 TITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKE 175
           TITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKE
Sbjct: 121 TITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKE 180

[Close]

BLAST of HG10003270 vs. NCBI nr
Match: XP_023553392.1 (uncharacterized protein LOC111810820 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553393.1 uncharacterized protein LOC111810820 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023553394.1 uncharacterized protein LOC111810820 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 6.1e-80
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTT+SGAML LLPPVGQHWG+  AKDF LRR S QLQTPNGRRQS+ AKAGPVFLKP
Sbjct: 1   MEMLTTSSGAMLTLLPPVGQHWGKMKAKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRK-NNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120
           IPSTGT GGVL S+RK NNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD
Sbjct: 61  IPSTGTKGGVLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120

Query: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEG Y++DRRR
Sbjct: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGAYEDDRRR 175

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BLAST of HG10003270 vs. NCBI nr
Match: XP_004148272.1 (protein FERTILITY RESTORER RF2, mitochondrial [Cucumis sativus] >KGN55988.1 hypothetical protein Csa_010321 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 8.0e-80
Identity = 155/174 (89.08%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTTNSGAMLPLLPPVGQHWGR  A +  LR YSSQ QTPN RR S+ AKAGPVFLKP
Sbjct: 1   MEMLTTNSGAMLPLLPPVGQHWGRMKANNLPLRWYSSQHQTPNSRRLSMVAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120
           IPST T GGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  IPSTRTKGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLG LKDKE +G Y+NDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEEDGSYENDRRR 174

[Close]

BLAST of HG10003270 vs. ExPASy Swiss-Prot
Match: Q0E3V2 (Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=YL1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 82  CFAALNARCAAEQTQTVTRE------APTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGG 141
           C A++   C A QTQT  R+      +P    +  K +SP+LDDG +GFPP   G GGGG
Sbjct: 58  CEASMRITCCANQTQTARRKSFSGPTSPPSGSVKEKVRSPKLDDGGTGFPPFRFGGGGGG 117

Query: 142 GGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           GGGGG N +GGF  F  +  L +L  +E E   QN  RR
Sbjct: 118 GGGGGSNSAGGFILFVIVLLLDYL--REFERNLQNGTRR 154

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BLAST of HG10003270 vs. ExPASy Swiss-Prot
Match: F1SZ44 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-08
Identity = 44/98 (44.90%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 72  CSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPR 131
           C S K          + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP 
Sbjct: 34  CISFKREVSAKAVLRSVRCNATQTQSAQRKSSTATVKRSDPKGKTQGPKLDDGSGGFPPF 93

Query: 132 DDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE 164
             G GGGGGGGGGG  N+ GGF  F  +  L +LK+ E
Sbjct: 94  RFGKGGGGGGGGGGGSNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of HG10003270 vs. ExPASy Swiss-Prot
Match: F1SZ42 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08
Identity = 44/98 (44.90%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 72  CSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPR 131
           C S K          + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP 
Sbjct: 34  CISFKREVSAKAVLRSVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPF 93

Query: 132 DDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE 164
             G GGGGGGGGGG  N+ GGF  F  +  L +LK+ E
Sbjct: 94  RFGKGGGGGGGGGGGSNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of HG10003270 vs. ExPASy Swiss-Prot
Match: F1SZ41 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08
Identity = 44/98 (44.90%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 72  CSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPR 131
           C S K          + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP 
Sbjct: 34  CISFKREVSAKAVLRSVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPF 93

Query: 132 DDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE 164
             G GGGGGGGGGG  N+ GGF  F  +  L +LK+ E
Sbjct: 94  RFGKGGGGGGGGGGGSNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of HG10003270 vs. ExPASy TrEMBL
Match: A0A1S4DXD8 (uncharacterized protein LOC103490999 OS=Cucumis melo OX=3656 GN=LOC103490999 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.8e-85
Identity = 161/174 (92.53%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTTNS  MLPLLPPVGQHWGR  AKD  LRRYSSQ QTPNGRRQSLFAKAGPVFLKP
Sbjct: 1   MEMLTTNSAVMLPLLPPVGQHWGRMKAKDLPLRRYSSQHQTPNGRRQSLFAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120
           IPSTGT GG+LCSSRKN+ FIC AALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  IPSTGTKGGILCSSRKNSTFICLAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQ+DRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQDDRRR 174

[Close]

BLAST of HG10003270 vs. ExPASy TrEMBL
Match: A0A0A0L2P2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G044530 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.9e-80
Identity = 155/174 (89.08%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTTNSGAMLPLLPPVGQHWGR  A +  LR YSSQ QTPN RR S+ AKAGPVFLKP
Sbjct: 1   MEMLTTNSGAMLPLLPPVGQHWGRMKANNLPLRWYSSQHQTPNSRRLSMVAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120
           IPST T GGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  IPSTRTKGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLG LKDKE +G Y+NDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEEDGSYENDRRR 174

[Close]

BLAST of HG10003270 vs. ExPASy TrEMBL
Match: A0A6J1HQC3 (uncharacterized protein LOC111465127 OS=Cucurbita maxima OX=3661 GN=LOC111465127 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.6e-80
Identity = 157/175 (89.71%), Postives = 162/175 (92.57%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTTNSGAML LLPPVGQHWG+   KDF LRR S QLQTPNGRRQS+ AKAGPVFLKP
Sbjct: 1   MEMLTTNSGAMLTLLPPVGQHWGKMKVKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRK-NNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120
           IPSTGT GG L S+RK NNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD
Sbjct: 61  IPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120

Query: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEG Y++DRRR
Sbjct: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGSYEDDRRR 175

[Close]

BLAST of HG10003270 vs. ExPASy TrEMBL
Match: A0A6J1F258 (uncharacterized protein LOC111438781 OS=Cucurbita moschata OX=3662 GN=LOC111438781 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.6e-80
Identity = 157/175 (89.71%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTT+SGAML LLPPVGQHWG+   KDF LRR S QLQTPNGRRQS+ AKAGPVFLKP
Sbjct: 1   MEMLTTSSGAMLTLLPPVGQHWGKMKGKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKP 60

Query: 61  IPSTGTNGGVLCSSRK-NNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120
           IPSTGT GGVL S+RK NNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD
Sbjct: 61  IPSTGTKGGVLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120

Query: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEG Y++DRRR
Sbjct: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGAYEDDRRR 175

[Close]

BLAST of HG10003270 vs. ExPASy TrEMBL
Match: A0A6J1KZM4 (uncharacterized protein LOC111498519 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498519 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.6e-78
Identity = 153/174 (87.93%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MEMLTTNSGAMLPLLPPVGQHWGRRNAKDFSLRRYSSQLQTPNGRRQSLFAKAGPVFLKP 60
           MEMLTTNSGAMLPLLPPVGQHWGR  A +F L R S Q++T NGRRQ + AKAGP+++KP
Sbjct: 1   MEMLTTNSGAMLPLLPPVGQHWGRMKAINFHLSRDSFQVKTSNGRRQPVIAKAGPLYVKP 60

Query: 61  IPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120
           I STGT GGVL SSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGTGGGVLYSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of HG10003270 vs. TAIR 10
Match: AT1G56200.1 (embryo defective 1303 )

HSP 1 Score: 141.4 bits (355), Expect = 7.1e-34
Identity = 77/119 (64.71%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 58  LKPIPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLP--GKEKSP 117
           + P+ + G + G+   SR+ +  IC +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP
Sbjct: 39  VSPLSAVGLSSGL--GSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKSP 98

Query: 118 QLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
            LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE E  Y+  RRR
Sbjct: 99  SLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 154

[Close]

BLAST of HG10003270 vs. TAIR 10
Match: AT1G56200.2 (embryo defective 1303 )

HSP 1 Score: 141.4 bits (355), Expect = 7.1e-34
Identity = 77/119 (64.71%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 58  LKPIPSTGTNGGVLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLP--GKEKSP 117
           + P+ + G + G+   SR+ +  IC +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP
Sbjct: 36  VSPLSAVGLSSGL--GSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKSP 95

Query: 118 QLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 175
            LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE E  Y+  RRR
Sbjct: 96  SLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 151

[Close]

BLAST of HG10003270 vs. TAIR 10
Match: AT1G30475.1 (BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 70  VLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPR 129
           V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPR
Sbjct: 90  VVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPR 149

Query: 130 DDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 166
           DDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 150 DDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 186

[Close]

BLAST of HG10003270 vs. TAIR 10
Match: AT1G30475.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 70  VLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPR 129
           V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPR
Sbjct: 61  VVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPR 120

Query: 130 DDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 166
           DDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 121 DDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 157

[Close]

BLAST of HG10003270 vs. TAIR 10
Match: AT1G30475.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 70  VLCSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPR 129
           V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPR
Sbjct: 61  VVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPR 120

Query: 130 DDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 166
           DDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 121 DDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 157

The following BLAST results are available for this feature:

BLAST of HG10003270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448993.1	1.4e-84	92.53	PREDICTED: uncharacterized protein LOC103490999 [Cucumis melo] >XP_016900649.1 P...	[more]
XP_038905031.1	1.2e-83	93.10	protein YELLOW LEAF 1, choloroplastic-like isoform X2 [Benincasa hispida] >XP_03...	[more]
XP_038905028.1	4.7e-80	84.29	uncharacterized protein LOC120091196 isoform X1 [Benincasa hispida] >XP_03890502...	[more]
XP_023553392.1	6.1e-80	90.29	uncharacterized protein LOC111810820 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_004148272.1	8.0e-80	89.08	protein FERTILITY RESTORER RF2, mitochondrial [Cucumis sativus] >KGN55988.1 hypo...	[more]

BLAST of HG10003270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0E3V2	1.7e-08	44.44	Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
F1SZ44	3.8e-08	44.90	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX...	[more]
F1SZ42	6.5e-08	44.90	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX...	[more]
F1SZ41	6.5e-08	44.90	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=3...	[more]

BLAST of HG10003270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXD8	6.8e-85	92.53	uncharacterized protein LOC103490999 OS=Cucumis melo OX=3656 GN=LOC103490999 PE=...	[more]
A0A0A0L2P2	3.9e-80	89.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G044530 PE=4 SV=1	[more]
A0A6J1HQC3	8.6e-80	89.71	uncharacterized protein LOC111465127 OS=Cucurbita maxima OX=3661 GN=LOC111465127...	[more]
A0A6J1F258	8.6e-80	89.71	uncharacterized protein LOC111438781 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A6J1KZM4	3.6e-78	87.93	uncharacterized protein LOC111498519 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10003270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56200.1	7.1e-34	64.71	embryo defective 1303	[more]
AT1G56200.2	7.1e-34	64.71	embryo defective 1303	[more]
AT1G30475.1	1.6e-25	65.31	BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G5620...	[more]
AT1G30475.2	1.6e-25	65.31	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G30475.3	1.6e-25	65.31	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..140
None	No IPR available	PANTHER	PTHR34938:SF1	PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIAL	coord: 57..173
IPR040299	Protein FERTILITY RESTORER RF2-like	PANTHER	PTHR34938	PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIAL	coord: 57..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003270.1	HG10003270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009507	chloroplast