HG10003230 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003230
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase
Location	Chr11: 19038281 .. 19052537 (-)
RNA-Seq Expression	HG10003230
Synteny	HG10003230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCATATGGAAGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGTAAGTATTTTAATTGTGATATAGTAACCTCATATACTGCTTTAGGAAGTCAATATTTTCAAGACAATCACTTGTCAATAAGCGCGAATGTAGGTTCAAGCCATAATGGACTACTTATCTTGGATTTAATACCCTATGAGCTCCCTTGGTAATCAAATGTAGTAATGTTAGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGTAAGTATTTTAATTGTGATATAGTAACCTCATATACTGCTTTAGGAAGTCAATATTTTCAAGACAATCACTTGTCAATAAGCGTGAATGTAGGTTCAAGCCATAATGGACTACTTATCTAGGATTTAATACCCTATGAGCTCCCTTGGTAATCAAATGTAGTAATGTTAGGTGGTTATCCTGTAAGAATAGTCAAGAAGCATGCAAGCTTGCCGCGAAACTAACAAATGTAAACAAAAAAATTATAACAATTCATATTGGTGAAGGGTTCAATCATAATAAGTAATAACCCCAGTTCAAGACTGGTTTGTGAAATTTAATGGTAAAGGAGTTTAATTGCAATAATTTCATAAGCGGGGGACATTTTTCAAATCTATAAAACTCATGGTGTGATTACTCTATATTGGAAGGTGAACCTTTTTTTTTCTACTTCCTCTTTTTCCCCTACATTTATCTTAATTTTTATTCCACGTCCTTTTGTTTGTAAAGAAAGGAAAATTTTTATTTTTGTTTTATATACTAAAAAATTGTTGTTGGATAAAAAACCAAAGGTGCCTTAAACTTGTGAGTTTATGCGTGCCTTTAATTTTGTATGGTGTCGTGTTGCTATACATACAGGATTTGATTTTTGATATTCTGATGTGAAAAGAAACTTTATTGATGTAACAGGAGAATATAGCAGTAATGACAGTTGATGCATCCAACGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGTAATCAACTAGTCACGTTATAAAGATGTTACTTGTTAAATTTTCTTTCACACATTGGAGTGTACTGACATTTTTGTTTGAATGGCTTTGGAAGGACATTTTGGCGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCACAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAATTATGGGGCAAGGTCAGGTACCTCACTTATTGTGATGAACCTTGAATTATTGTAATTAATTTAAAAGTTATGGCTTTCTGCTATGCGGTTATCTTGCCCATGTGGATATGTAGATTATTCTCATAAAAAAAAATGCCTTTTCTTCTTTCCATACATGTTCTGGGGAAAATTCTTTGAATTCTGATTCAATTGAAGAAAGATGTACAGGGCTTTTAGTACCCTCCGTCAGAATGTCGCCTTACCACCCCCCCCCCCCCCCCCCCCCCCCCACTTATCTTACCCCTCCACAACCAGTTTGTCTTCACTCCTTTGGATCCAAATTTAGGTTTAACAAGAGGAGTTATTCACTCGACCAAGGACTCTCCACCTCATGGTGACGTCTTTGAGGTTGATTCTGAGGTAAGTTTGAGTTGTGTGGAATCAGTCATTCAGCCCATGGATTTCAGTATGGAGGTTGATGTTCTTGAAGATTCTTTATCTGAAGCTTTTGACTTGCTATTTTGGGATTGTGACAAGAAGACCCCTCCTTCTATTCCTTCATCCATGCTGGGCCAAATTTGCTTCATTGATGGAAGCTTGTGGTTTTGAGTTTTTTGAAATTCCTCCTTTCTCTCAAGAAAGAAGCGTTCATGGTTTAGCGTTTTGCAAAGTTTTTTTTTTTTTTTTTCCTTCTCTGAGACATTTGGATTGACTCGCATGAGAAGATTTTTTTTTATTATTTTTTTGCTGGTGATGGTTCTTCCAAAGCTTCTTTCAATGGGTTAAAGTTGTTTCAGAGGTGAAAAGTTTTTCCAAAAGTGGTTTGAACTTTGGGAGTTTGATGGTATCCATCTATTTGGTATTGAGAAGCTTTCTGATTTCATTGCAACAGGTTTCTTTATGATTGGTTATAAAAGGTTTTTTTTGGTTGGTTGTTAGTTGGTTCTTGGTTTTCTAGAAGAATTGAAATAGCTACCGCTTTTCAGTGTTTGGTGGAGGCCTTACTTATAGTTTGATCGTTTGTTCGCAAGCTCCCTAATCTTACATTCAAAGATTTTGGAGTAGTTCTTGGTTCTTTAAATGTTTATTTATTTTCTGGCTAATCTTTATATGGTTGTATTTGCTTGTATTTGTTGTTTGTATTATTTCTTTTCACTCCCTTTGGGAGTTTGTATCCCTGAACACAATCCTTTTCATTATATCAACGAGAAGTTGTTTCTTGTAAAAAAAAAAAATAAATAAACAAATAAATAAACAAATAAATCAAAGGTATAATCGTGTGTTTAGAAGTGTTTCTGAGGGTATAATTGTATTTTTTTTACTTCTTGCACTTTTGAGTGGAAAAACTGACCGTTTCTTCTAAAAGCACCCATGTCTTATTTGTAGCTGAACGCCATGAAAAATTGAAACACCTTTTTCAATTCGTGTAAACCATGGGGTGGGTGGGTGGTTGATAGAAAAGGAATGGAGTGACCAAAAAAAATATAAATAATAATAATAATAATAATAATAAAGAAAAAGAAAACAAGCACACTTATATTTATTCTTCCAAATGCCAGAGTTACCAAAAATCTCAACGAACTTTTCATAAGATGTATTAAGATGCCATGACTTAACAAAGAAAATAGTAAAACCATCAAGTAATCAAGATCCATGACTTATTAGCAGCTGAAGAAAAGCTAAGCTCTTCAGTGAGTTTGAATTTCTTTTTTTGAAAAAGAAACAGCATTTTTTCATTCATCTACTGAAAAGGATGAATGATTAGCTTGAATATATGTAGAGTTGGTTCAATGGTAAGTCTCCATGCCGAGAAGTGAGCTGAGAAGTGAGAACTATTCTTATAATGATTTCCTCTTGGGCACTTTATCTACACCCATTTGTAGTTTCTCCAATCTTCTCCCTTCATTTCTAATGGACAGAGCCTTTTGTAGCTCGATTTGCTTGGCAGTGCATCTTTCCCACAGTCCCATTCATAATTTACATCTCTTCAATTGATGAAAATTTGTTTCTTATCAGGGAAAAAAAAAAAAGGAAAAAAGATGTCATTGTGCCATTGGGACTCTTCACCTTTTGATATTTTTATGTGGGTTGGTTTATTATGGGACTAACCATGGTCACATATAACTGCCCGGTGGTGGTGGTAGCTTCTGCATTTTTTTCCTAATCTAATCTAAGATATATTTTTAAATTTGTATTTTCGTTCTCTTTACATGTACCAGGTTGAGGATCCAACATCTGATTATCATCGACCTAAAGGTTGCAGATATTGTTTTGTAAGTTCATTTAGCTCACGTTGTTTTATTTCTGTCTTAACTGTTTATCGTTTCAAACCTCTTCTGATGAAAAAGTTTTATTTCAAACCATGCTTTATGTGCTTAACAGGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTTAGAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGATTGCCTTCAGATTATTGGAATTTTATCCCTAAAGATGAACAACAGGAAGACAGTTATTGTAGACCAAACAGGAAAATCCTAACACATGCTCAGGTATCGGGCCTCTTTATGCATCTGAGTCCTGACTAGATTTAGTTCGTTCAGTGTTTTCATCTGCGCAAATTTCCATTGTTTTCTCAATTTGTTTTCCTTAAAATCGTCAGAAACCATTGTATTTAATCGCTGAACCCCATGAAACCCTTATTTGTTTAATGATGCGATTAGTATGTTCTCTTTTCTTACTAAAGAAAAAAAGACGAGAAAAGAAATTCAAATCAGGAACGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTGTCAAAATTATAAATGCACAAGCTCGACGACTTTAAAGATTATAAAAATAATAAATGTCCTAGATTTTTACTTTGTTGGACCCCTTTTCTAAAATGGGGGTTTTGTGGGCTTGATTCTTTATTTTTTATTTTTTATTTCATTTTATGCCCTTGTATGGTCTTCTTTCATTTTTTTCTCAATGAAAGTGGTTATTCAAAAAAAAAAAAAAAAGAGGTGTCCTGCCATATAGTTCATGTCGTGTTGTGCTTTTCTTGAGTTTTTGCTGTTCTTCTTATGTCTTAGGTCTTTTTATCATTATCATTATTTTAATTTAAACTGTTCCCTTAATATAATATGCCTCAATCCTCTCTTTAATTTATTGCTAAGAATAAGTCTTACAACTCCCCCTAATTCTGACCCTAAGAAACTCTATGATGTTGGTATTTGTATTAGTGCTTACACATTCAATTTTACCATTAGCATGTTGCGGTTTTTCTGTAGGGTGTTTATTCCTTTTGTCTTATTATTATTATTATTATTATTATTATTTTTTCTTGAAAAAGTGAAAGTGAACGAACTTTGCAGTCTTGAAAGCCTTGAACAAATTGGAGAATTTAACGAATATTATAAACTAGTGGAGTTTGTTGTCTGTAATGCGTTGCTCTAGTCTACTGATGCATTTCAAAATTAGTTTGGCTTCAACTTTATAATTTTGATGTTTCTTTGTCATTCATAGCTTATCCATTTCTTTCTGGCAGCGGCAAATGTTTTGCATTATTGTAAACCCGTGATATTTTCCTTCACTATAATGATACAATATTTAAGTGATACGTTTTTCTTGGATTTCAGGTTCATTATTTGTTGAAAGACATCGACCCAAAGTTTCTTAAAAAGTTTGTGCCTGCAACAGATTCACTGTTTCTAAACTCTTTCCCAGTTACTCCGAACAGTCATCGTGTGACTGAAATGGCACATTCATTTTCAAATGGACAGCGTTTGATCTTTGTAAGACCTTTCTTCTAATACCCTGTTAGGTTGAGGTTATTCAAATGAAAGGATGCTTGCATGACATTTGCCTCTTTCTAAAGTGTTGCTTTTAAACATGTTTAACGATTCAAGGATGAAAGGACCAGGGCTTACAAGAAAGTGGTTGATTTCAGAGGGACAGCTAACGAGTTAGGTTCTCGCGTTCTCGATTGTCTCAAAATTTCGAAGGCAATTTACAATATCTTTTTCTTTTTCCTTAATGGTGTTAATTATAATGTGAAACTTTTGCTCTTGCTTATATTGTCACTTCTTCTATGCAGCTTAGCCCAGAGAAGTTACAAAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTCTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGCGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCTTGTCATGTAGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTCGAAAAGGGAGAGATCTATGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGACGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTAATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTTCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCAGAGTGGAGGTCAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTTACATTACATCAGTTGTTGTCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGTGCTTGGACCGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTTTTTATTAAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAGGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGTGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGCGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATTCACATAAAGATATCCTTACTGGAGATGACGAAGATAATCAACACGTGTTATCTATTGCGGTGGAGCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTCCGGGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACTATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTCACGTGTTCTGCATGGAACAGTCAGAAGATGCCTCGTTATATTCAGAAGGATGGTCTTCCTGACCGTACACCGTCTTTCATACCATATGCTGTGGTTGAGAGTTCCTTTCTCTCAGGGCTTAATCCATTTGAGTGTTTTGCTCACTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACGTTTCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCGTCTCTAATGAATTGGATGGTGAGAATAATAATAGAGATCGTGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGGTACGGTAGCCTTCTCCTCTCAATGTAACAATTTAAGTCAAGAATTTGGTAAATATATATATTATTTTTATTATTCTATTCTTCGTTTGTTGAATCACCAATTAACTGATGAATTTTGATAGATTTAATCTTATATCAAAGACTCTTGGAATGTCATTTTCTCCCCATTTATATCGATAACCACATGTTGGGCATTATGCAAATTTTAAGTCCACAAGTGTGGAAGAGTGTTAAAAGTTTTGACATAAAATAATTAAATTTACAGTAATCCATAAACTTAAGCTTTTGGGTTTAGTGTTGATTTAACAATTTGCAAAGTACTTCTATATTTTTTTTCTACATGCTATATATTCGAAAACAATTTTTAAAACTTATCTTACCAAACGAGTTTTCTACCTTAAGAAACTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACGAGATGACATTTCAAGCATAACTTCTAAACAGGTCTCTAGTTTCTGATACCAAGACTAATGGTTGTGATATACTTGGCTTATGCAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCAAAACGAAGTTATGGATTTGAGTATGGAGCTTTAGGAGTTAAGAACCATTTAGAAAGAGTAATATTTAAAGATATAGTGTCTAATGTCATGATAACGTAAGTTATTATATTTTTAATGCTTTTTATTTGTCATTACCTGTGTTTATAGCATCTTTTGAATGACATTATTAGCAATCTTTTCTATGGACATTAGCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGTAATGAAATCTGGAAGCTGTCTTTCTTTATATGACGCAAGTGTATACTGCTAGAGTCCTCTGTATCTGGTATCAACTATAATTTATCCATCCAGGAAATTTTGAAGAAAAGAAGATTGAAGATGAATTCTGTCATCCATTCCATTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATGACCCAGTACGTTCCTTCTTCCACTAACATTTAAAGTTGGTTCCCTTTCATTAAATATTCTCTATTTGGGCTTTTCTATCAAAGCAAGTTAACTTTCGTAATCTCACTTGAGCTGTATGTCATTTTGTGGCTTGGCTGATAAGGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGTCTGTACTGTTTGTTACCTTGCAATTCTTAATGTGCATTTCCACACACACATGGCCAGTCTGAATAGCTGATTCTTTGACTTGATAATATTTCATTATCTAAAACTTATCATTGGCGTCTGCTTTTTCTTGAATTTAGAGCTGAAGTCATAATGTGTTAAAAATGTCTTCAGTGATACGTTTTTTTAACATTTTCTGTAGAATATTTGGTATAAGTGGTGTGCGTTAGTTCTGGGCACCTGGGTCATTCTATTTGTATAATCTATAAGTTAGGAGTTAGAGAAGATATAGGGGAGTCCAATTTTGGGAAAAACGGGCTTTATTTTGAAAAGGCCTAAGACAAGGTTGATTGGTCACATGAATTGAGCTTTAGATGGAGAATGTTGAAGAGTGCTTTCTTCTTCAAAGTTAAATTACTCTTTATCCTGTCATTCCCGAGTTTGCCTAGCTGGAAGGCTTTTCAATAATTCAAGTCTGTTCTATTTGTTTTCTTTTTTTTTTTTTAGTAAAAGAAACTTTTATTAATGAAGCAGGGGATAACCCCAGGAGTTCTATTTGTTTTATTTTATTGAAGTAATATTAAAAAGAAAACATATAATGTGCCATGCCTTATATTTGACAAAATTTAAAAGATAGTTGCATTAAGATTGCTAGGTTCTTGCTGTTTCAATTTTCAACTGGCATAGGTTTTTTGAAATACCAAGGGACTTTTTAAGATGGTCTGTCATTTGCTTGAGTAAGTTTGTTATTTGGCTAGATTTACCAAACATTTACATTTTCTTTTCCTTTGGTATTTGCATTAGGCTTTGCTGAGATTGACAGGGTAGACATTGCATGGAATGACCGGCCAAAGGTACCAAAACCTCGTTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTATAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATACGGAATAGATTCTGGATGGAAGTACTTTCTCAACGTGTGTATTTATGTCCATTACCTTTCTGACAAGTTCGGCTTTGGTTCTTGCATCAGACCATTTGCAGGAACTTTTACATGCTTCTAATCTAACCATTCAAATATTTTAATGCAGAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCCTAAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTATTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCAGTTAGTTATCTACTTGCTTATCTTCATTTGAATCATCATATTGAGCAAGCAGTGTGTAAATTTAATCCATGGTTGATTTTCTGCAGACTCCTGGCGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCACTGGGAACCGGGGGACAGTTCGATATCCTATATTCTGGGAGGGTGAGATTATATGTTCCGACTTCATATTAAAAAACAAAATGTTTCAGCTCATAGATGCTTAAGAGTTAAGACTAAAAACAATGTTTTTATGGGATTTCAGAAGTATTCCTTTCTTTTTAGGTAACAATTTCATTGATGTTCTGTGTGCGCAATCTTTTGAATTATATCTGTTATTTGGAATAGTGTTTAAGTTAACGAGTTTTCAAACGTGTGGTAAATGAATTAACGATAATCCTAAGATGTTTGTCTTCTAATAATAAAAAGGTTCCTATTTCATATATGTGGGGATTTTTTCTCCTGCTAAGATTCCACGTTAGAGGCTTTTTGTTCTTATCCTCCTACTGACTCTTGCAGATCTCTTTAATATTATACATGCATGCATATATATTATATTTAACCATTAGTTTGGCCACAAAATTACGGTGCTTCTTGTTCAAGTTTGGTGTGGTATTTCTTTTTCTTTTGTTATTAAAATGTTGTTAACGAGTATACATATATGTTTTTATCAAAAAAAAAAAAGAAAAGAAAAGAATTAAAGTTCAAACGATGAATGATAATTAAAATGTTACTATATCTCATTCTAGATGCATGGAAATTTTCATTTGTACCAGTCTATTCAATGGTCACTGTGCCTGTTATCTGTTGTTCAGGTTTTTGTGGTACTTCAGCTATCTAATGGTTTCAAATTGTTCTTACTCTTCAGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGCGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAATGATATTCAGAAGCTGTCGTTTACATTGAGAACCATTTTACACAAGTTAGTTCTTCCTCTTTGGGCATTGCTCAGCTATTACAATTGGCATCGTTATATTTGATGTGTCCTTTTCTATTTGGACATTCTCTTTTATTTATAATTTCCATTTTGGAAAGAAAATAAGAAAACATCAATCCATGTTCTAGCTTAATGAATAATTGTTTAATGCTTGAAAATCACTTACATAGTATCTCAGATTGTTCCTTTTTAAAATTTCGAATGCTGCTGAAATGCCATATGCAGAATGGAGTTGGAGTTCTAAAAGGTTTCACTTGTGTGTGTAGGTATTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTATTTTCTATAGAAGATGAAACTCTTTTGGCATATTCCATCTATTCCCCCTCCCTGAACCCCAAAACAGAAACAATATAATAAACAAATAAAGTAGAAACAAGGAAAGAGCAAGTTTCTTTTGTGATTCATGCCTTTTTATCTTCCTCTGCTCTGGGCAATAGTCTTGAGTTAGCATGCTCCATTCTGCCCTTACATTCTTGTCCAGGTTCCAGCAATTATGGACAGACTTTTCTTTTGAATTTTTTAGTTCGACAACGTGCGGGGGTGGTATTCGAACCTCTGATGTGTCGGTCAGCTGTGCATGTCTTAACTAGTTGAGTTATGCTCAAGTTAGCAACTTTTTCTAAACAAGGGAGAAAATCCTTGAAGGATGATAGAGATCTGGGAGTAGGAACTTTGCCTGGTGGAAAAGGAGCATTTTAGTGTAGTCTAAACTAGATGTAAGATCCCATTGTTTTCTGGCGCAGCCCACTATGCAATGTTTATTTTCTTTGGGATCAATATCAGAGGTGCGGCTCAGTGGCAGGCTCAAGAAGGTTAGATAGGCCGGAGCCCAAGTTAGCAAGGAGAAGTCATCTCACTGACTGCCTTCCAGACTGAGCTATTTAAGCGTTGTTTATATTCACTGGAAGTTCAAGACATTGTTTGAAGAATAAGCACCACTTTGAGCATATTATTTACTGTAGCCACAAGGTCCCATGGTGCCAGGTGAGGGTGCCAGAATGCAGTTCACAGCCATATGATGAAGATGAATGTCTTGAGGCAACTGAATGTTGAGTGCCTAAGAGGAGCTTGTGGACACTTGTTCCAATCTAGTGGAGAGTCTCAGCTCCAATCCTACCCCACAGTATTCCATTTTGACTCACACTAGCTCTTTTCTGGGTCTGTACAAAGAGCATCCGCTCAGGGTTTTAACCTCTGAACTTTCATAGAATTGGTTGGCTCAGCTACTAGAACTTGACTTTGGTAACACATTAGGTTAATCAAGTATAGAAATTTATTCTAAGAAGCACGGACACGGATACGAGATACCGATACGACACGACACGGACACGGCGACACACCATATTTTAAATATCTAGGACACGACACGGCAAGGACACGTTTATTAAAATATACATTTTTAAAAATATATATCATTTTCATACCAAAATATGATGCATTTATATGCTTAAAAGACTTACCTTGATGTATTTCACACTCAAAAGTTATTATTATTGTCATATATGTGTCTTTTAAGTCTACTCAACAAGTGTTCAATGCATGTCTAACACATTTGTTGCACTAACAAATGTTCGATGCGTGTCCAACGAGTGTCGAAGTATTGGAGTGTCCGACACGTGTCGGACACGGACACGCTAGCCAAACTAAAGTGTCCGTGCTTCTTAGAATTTATTGCTTCTTATAAAGATGGATTTTAGGATTAAAAAGAACACGAGTTCTATAGTCACCCTTAGCTTAAGTTCCGTTGTTTTCGACATAACTGAAACCACGAGATGTTATTACCTTCTCTTTTGCCATACAATCAAGGAAACATATTAAAATAAAAAATCTGATTGGATCTGAATGCACTTAAAGTAGAAATATATAGTAAGAAATTCAACTCTTTGTACTTTTTCTTAAAATGGTCTACATCAGACTGGATTCTGCCCCCAACCAAGGACGCAGATAGGACTTGCAAAAGGAGACGGGATTAGAATAAAGTGCAGTTGGTGGAATAGGTGGCTCACTACATGTCCAAGCATCTGACTAATATCAGTGACCTAAAGGAGAGTGAGGTTCATCGTTCAGGCAATGGCTTCTTCAAGTGAGGCGGTAGCTATCCAGTTGGTCACTGATGACACTGGGGAAGACAAATAACAGTCACTTCAGAGGAGTATTTTAATACTTAAATTTCAGATTCTAGCCTCCCTCAGAAGCAGGATCCAGTTGGTCAGTTGATGACACTTGCTGGTGGAGACAAATAACCGTCACTTCAAAGTGACCACTTAAATTTTAAATTCTAGCCTCCTTTAGAAGCAAATCCCAATCGGCTCAAGAAACTTTCGTCACCCCACTCACTATCATTCTATATAAATTCCCTATGAACTGTAACTTTGAAATCAGAGGCTATTCTACTGTATCAATGGTAATATGCCTTATTGTTTAGGGACGGGATCCAATACTTTAAACAACTGATATATGGACTACCAACACGTTTGATGTTTTTATCCTTTCCTCCGTTAATTAGTGCTTTTGTCCTAAACTGTGGCTCAAAATATGTAGTTGATCTCTATGCTGTTATTTATTTCCTGCTACCTGTTTAGTAAAGAGATCTGATGTTTATTCATGGAATTAATGTAATCATGTTTACCTGCTACCTGGTTGTTCTTTGTAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGTTATCAGTCGAAATGGATGCAAGAAAAGTTTGAGTGA

mRNA sequence

ATGATCCATATGGAAGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAACGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGTTTAACAAGAGGAGTTATTCACTCGACCAAGGACTCTCCACCTCATGGTGACGTCTTTGAGGTTGATTCTGAGGTTGAGGATCCAACATCTGATTATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTTAGAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGATTGCCTTCAGATTATTGGAATTTTATCCCTAAAGATGAACAACAGGAAGACAGTTATTGTAGACCAAACAGGAAAATCCTAACACATGCTCAGGTTCATTATTTGTTGAAAGACATCGACCCAAAGTTTCTTAAAAAGTTTGTGCCTGCAACAGATTCACTGTTTCTAAACTCTTTCCCAGTTACTCCGAACAGTCATCGTGTGACTGAAATGGCACATTCATTTTCAAATGGACAGCGTTTGATCTTTCTTAGCCCAGAGAAGTTACAAAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTCTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGCGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCTTGTCATGTAGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTCGAAAAGGGAGAGATCTATGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGACGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTAATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTTCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCAGAGTGGAGGTCAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTTACATTACATCAGTTGTTGTCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGTGCTTGGACCGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTTTTTATTAAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAGGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGTGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGCGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATTCACATAAAGATATCCTTACTGGAGATGACGAAGATAATCAACACGTGTTATCTATTGCGGTGGAGCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTCCGGGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACTATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTCACGTGTTCTGCATGGAACAGTCAGAAGATGCCTCGTTATATTCAGAAGGATGGTCTTCCTGACCGTACACCGTCTTTCATACCATATGCTGTGGTTGAGAGTTCCTTTCTCTCAGGGCTTAATCCATTTGAGTGTTTTGCTCACTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACGTTTCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCGTCTCTAATGAATTGGATGGTGAGAATAATAATAGAGATCGTGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCAAAACGAAGTTATGGATTTGAGTATGGAGCTTTAGGAGTTAAGAACCATTTAGAAAGAGTAATATTTAAAGATATAGTGTCTAATGTCATGATAACGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGGGTAGACATTGCATGGAATGACCGGCCAAAGGTACCAAAACCTCGTTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTATAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATACGGAATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCCTAAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTATTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCAACTCCTGGCGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCACTGGGAACCGGGGGACAGTTCGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGCGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAATGATATTCAGAAGCTGTCGTTTACATTGAGAACCATTTTACACAAGTATTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGCCCACTATGCAATGTTTATTTTCTTTGGGATCAATATCAGAGGTGCGGCTCAGTGGCAGGCTCAAGAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGTTATCAGTCGAAATGGATGCAAGAAAAGTTTGAGTGA

Coding sequence (CDS)

ATGATCCATATGGAAGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAACGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGTTTAACAAGAGGAGTTATTCACTCGACCAAGGACTCTCCACCTCATGGTGACGTCTTTGAGGTTGATTCTGAGGTTGAGGATCCAACATCTGATTATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTTAGAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGATTGCCTTCAGATTATTGGAATTTTATCCCTAAAGATGAACAACAGGAAGACAGTTATTGTAGACCAAACAGGAAAATCCTAACACATGCTCAGGTTCATTATTTGTTGAAAGACATCGACCCAAAGTTTCTTAAAAAGTTTGTGCCTGCAACAGATTCACTGTTTCTAAACTCTTTCCCAGTTACTCCGAACAGTCATCGTGTGACTGAAATGGCACATTCATTTTCAAATGGACAGCGTTTGATCTTTCTTAGCCCAGAGAAGTTACAAAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTCTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGCGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCTTGTCATGTAGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTCGAAAAGGGAGAGATCTATGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGACGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTAATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTTCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCAGAGTGGAGGTCAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTTACATTACATCAGTTGTTGTCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGTGCTTGGACCGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTTTTTATTAAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAGGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGTGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGCGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATTCACATAAAGATATCCTTACTGGAGATGACGAAGATAATCAACACGTGTTATCTATTGCGGTGGAGCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTCCGGGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACTATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTCACGTGTTCTGCATGGAACAGTCAGAAGATGCCTCGTTATATTCAGAAGGATGGTCTTCCTGACCGTACACCGTCTTTCATACCATATGCTGTGGTTGAGAGTTCCTTTCTCTCAGGGCTTAATCCATTTGAGTGTTTTGCTCACTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACGTTTCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCGTCTCTAATGAATTGGATGGTGAGAATAATAATAGAGATCGTGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCAAAACGAAGTTATGGATTTGAGTATGGAGCTTTAGGAGTTAAGAACCATTTAGAAAGAGTAATATTTAAAGATATAGTGTCTAATGTCATGATAACGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGGGTAGACATTGCATGGAATGACCGGCCAAAGGTACCAAAACCTCGTTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTATAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATACGGAATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCCTAAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTATTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCAACTCCTGGCGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCACTGGGAACCGGGGGACAGTTCGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGCGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAATGATATTCAGAAGCTGTCGTTTACATTGAGAACCATTTTACACAAGTATTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGCCCACTATGCAATGTTTATTTTCTTTGGGATCAATATCAGAGGTGCGGCTCAGTGGCAGGCTCAAGAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGTTATCAGTCGAAATGGATGCAAGAAAAGTTTGAGTGA

Protein sequence

MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQCTTCGASSLKSCEGLTRGVIHSTKDSPPHGDVFEVDSEVEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMITDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFTLRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSISEVRLSGRLKKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKGYQSKWMQEKFE

Homology

[Close]

BLAST of HG10003230 vs. NCBI nr
Match: XP_038905038.1 (DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905039.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905040.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905041.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 2546.2 bits (6598), Expect = 0.0e+00
Identity = 1292/1496 (86.36%), Postives = 1324/1496 (88.50%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            MIHMEDEQDGELPIPSGL+TGINFSV+TQQDTENIAV+TVDA++EVSDPKLGLPNPSYQC
Sbjct: 14   MIHMEDEQDGELPIPSGLLTGINFSVATQQDTENIAVLTVDAASEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSPPHGDV-FEVDSEVEDPTS 120
            TTCGASSLKSCEG          +IH            K  P    +  E+  +VEDPTS
Sbjct: 74   TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS 133

Query: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPS 180
            DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQK+VAKGGLPS
Sbjct: 134  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKKVAKGGLPS 193

Query: 181  DYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240
            DYWNFIPKDEQQE+SYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP
Sbjct: 194  DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 253

Query: 241  NSHRVTEMAHSFSNGQRLIF--------------------------------LSPEKLQS 300
            NSHRVTE+ HSFSNGQRLIF                                LSPEKLQS
Sbjct: 254  NSHRVTELTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRILDCLKISKLSPEKLQS 313

Query: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360
            KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 314  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 373

Query: 361  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 420
            LQISEHLSSWNMKKLSTSCYL+LV KGEI+VRREGRLVRVRNVLELNMGDTIYRPLADGD
Sbjct: 374  LQISEHLSSWNMKKLSTSCYLNLVVKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGD 433

Query: 421  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480
            VVLVNRPPSIHQHSLIAL VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 434  VVLVNRPPSIHQHSLIALYVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 493

Query: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLS 540
            EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLN FQMQQLQML LHQLL 
Sbjct: 494  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNAFQMQQLQMLALHQLLP 553

Query: 541  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNL 600
            PAI+KAPL RNCAWTGKQLFS LLPPDFDYSSPSH VFIKNGELISSEGSYWLRDSGRNL
Sbjct: 554  PAIVKAPLFRNCAWTGKQLFSILLPPDFDYSSPSHNVFIKNGELISSEGSYWLRDSGRNL 613

Query: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 660
            FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQ
Sbjct: 614  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQ 673

Query: 661  EAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVF 720
            EAEETCNLKQLMVDSHKDILTG+DEDNQH+LSI +ERL YEKQKS ALNQASVDAFKKVF
Sbjct: 674  EAEETCNLKQLMVDSHKDILTGNDEDNQHMLSIEMERLIYEKQKSVALNQASVDAFKKVF 733

Query: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 780
            RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLV LSFSLPHKL+CSA
Sbjct: 734  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVFLSFSLPHKLSCSA 793

Query: 781  WNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840
            WNSQKMPRYIQKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 794  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGG 900
            GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELD ENNN+DRDIGG
Sbjct: 854  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDSENNNKDRDIGG 913

Query: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960
            HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS
Sbjct: 914  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 973

Query: 961  KRSYGFEYGALGVKNHLERVIFKDIVSNVMI----------------------------- 1020
            KRSYGFEYGALGVKNHLERV+FKDIVS VMI                             
Sbjct: 974  KRSYGFEYGALGVKNHLERVMFKDIVSTVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1033

Query: 1021 ---------------------------------TDCPLADSLREDGDTVCLTVTIAENTK 1080
                                              DCPLADS+REDGDTVCLTVTIAENTK
Sbjct: 1034 RLKMNSVIHSLNIRCDSVRQEGRMNLPSLQIISQDCPLADSVREDGDTVCLTVTIAENTK 1093

Query: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE 1140
            NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE
Sbjct: 1094 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE 1153

Query: 1141 GNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKT 1200
            GNSRFWATL+NNCLP+MDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSL SATLDIGKT
Sbjct: 1154 GNSRFWATLVNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLVSATLDIGKT 1213

Query: 1201 IRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGI 1260
            IR +HLLL+ANSLSATGEF+GLNVKGLSHQREHALVKTPFMQACFS+PGACFVKAAKAG 
Sbjct: 1214 IRLEHLLLIANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGS 1273

Query: 1261 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIE 1320
            KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQS CEKQNAKI 
Sbjct: 1274 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSTCEKQNAKIG 1333

Query: 1321 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFTLRTILHK 1380
            SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+VSKSILREFLTLNDIQKLSF LRTILHK
Sbjct: 1334 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDNVSKSILREFLTLNDIQKLSFALRTILHK 1393

Query: 1381 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSISEVRLSGRLKK 1386
            YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI                       K
Sbjct: 1394 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI-----------------------K 1453

[Close]

BLAST of HG10003230 vs. NCBI nr
Match: XP_038905042.1 (DNA-directed RNA polymerase IV subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 2546.2 bits (6598), Expect = 0.0e+00
Identity = 1292/1496 (86.36%), Postives = 1324/1496 (88.50%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            MIHMEDEQDGELPIPSGL+TGINFSV+TQQDTENIAV+TVDA++EVSDPKLGLPNPSYQC
Sbjct: 1    MIHMEDEQDGELPIPSGLLTGINFSVATQQDTENIAVLTVDAASEVSDPKLGLPNPSYQC 60

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSPPHGDV-FEVDSEVEDPTS 120
            TTCGASSLKSCEG          +IH            K  P    +  E+  +VEDPTS
Sbjct: 61   TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS 120

Query: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPS 180
            DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQK+VAKGGLPS
Sbjct: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKKVAKGGLPS 180

Query: 181  DYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240
            DYWNFIPKDEQQE+SYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP
Sbjct: 181  DYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240

Query: 241  NSHRVTEMAHSFSNGQRLIF--------------------------------LSPEKLQS 300
            NSHRVTE+ HSFSNGQRLIF                                LSPEKLQS
Sbjct: 241  NSHRVTELTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRILDCLKISKLSPEKLQS 300

Query: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360
            KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360

Query: 361  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 420
            LQISEHLSSWNMKKLSTSCYL+LV KGEI+VRREGRLVRVRNVLELNMGDTIYRPLADGD
Sbjct: 361  LQISEHLSSWNMKKLSTSCYLNLVVKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGD 420

Query: 421  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480
            VVLVNRPPSIHQHSLIAL VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 421  VVLVNRPPSIHQHSLIALYVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480

Query: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLS 540
            EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLN FQMQQLQML LHQLL 
Sbjct: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNAFQMQQLQMLALHQLLP 540

Query: 541  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNL 600
            PAI+KAPL RNCAWTGKQLFS LLPPDFDYSSPSH VFIKNGELISSEGSYWLRDSGRNL
Sbjct: 541  PAIVKAPLFRNCAWTGKQLFSILLPPDFDYSSPSHNVFIKNGELISSEGSYWLRDSGRNL 600

Query: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 660
            FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQ
Sbjct: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQ 660

Query: 661  EAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVF 720
            EAEETCNLKQLMVDSHKDILTG+DEDNQH+LSI +ERL YEKQKS ALNQASVDAFKKVF
Sbjct: 661  EAEETCNLKQLMVDSHKDILTGNDEDNQHMLSIEMERLIYEKQKSVALNQASVDAFKKVF 720

Query: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 780
            RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLV LSFSLPHKL+CSA
Sbjct: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVFLSFSLPHKLSCSA 780

Query: 781  WNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840
            WNSQKMPRYIQKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 781  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840

Query: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGG 900
            GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELD ENNN+DRDIGG
Sbjct: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDSENNNKDRDIGG 900

Query: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960
            HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS
Sbjct: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960

Query: 961  KRSYGFEYGALGVKNHLERVIFKDIVSNVMI----------------------------- 1020
            KRSYGFEYGALGVKNHLERV+FKDIVS VMI                             
Sbjct: 961  KRSYGFEYGALGVKNHLERVMFKDIVSTVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKR 1020

Query: 1021 ---------------------------------TDCPLADSLREDGDTVCLTVTIAENTK 1080
                                              DCPLADS+REDGDTVCLTVTIAENTK
Sbjct: 1021 RLKMNSVIHSLNIRCDSVRQEGRMNLPSLQIISQDCPLADSVREDGDTVCLTVTIAENTK 1080

Query: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE 1140
            NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE
Sbjct: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE 1140

Query: 1141 GNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKT 1200
            GNSRFWATL+NNCLP+MDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSL SATLDIGKT
Sbjct: 1141 GNSRFWATLVNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLVSATLDIGKT 1200

Query: 1201 IRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGI 1260
            IR +HLLL+ANSLSATGEF+GLNVKGLSHQREHALVKTPFMQACFS+PGACFVKAAKAG 
Sbjct: 1201 IRLEHLLLIANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGS 1260

Query: 1261 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIE 1320
            KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQS CEKQNAKI 
Sbjct: 1261 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSTCEKQNAKIG 1320

Query: 1321 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFTLRTILHK 1380
            SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+VSKSILREFLTLNDIQKLSF LRTILHK
Sbjct: 1321 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDNVSKSILREFLTLNDIQKLSFALRTILHK 1380

Query: 1381 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSISEVRLSGRLKK 1386
            YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI                       K
Sbjct: 1381 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI-----------------------K 1440

[Close]

BLAST of HG10003230 vs. NCBI nr
Match: TYK19428.1 (DNA-directed RNA polymerase IV subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 2505.7 bits (6493), Expect = 0.0e+00
Identity = 1278/1523 (83.91%), Postives = 1320/1523 (86.67%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            MIHMEDEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA++EVSDPKLGLPNPSYQC
Sbjct: 14   MIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSP------------------ 120
            TTCGASSLK CEG          +IH            K  P                  
Sbjct: 74   TTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVRKKMM 133

Query: 121  ----PHGDVFEVDSEVEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMV 180
                 +   FE+   VEDPTSDY+RPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMV
Sbjct: 134  TLCHRNSSPFEIFIWVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMV 193

Query: 181  EVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPK 240
            EVKENMSKKYQKRVAKGGLPSDYW+FIPKDEQQE+SYCRPNRKILTHAQVHYLLKDIDPK
Sbjct: 194  EVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPK 253

Query: 241  FLKKFVPATDSLFLNSFPVTPNSHRVTEMAHSFSNGQRL--------------------- 300
            FLKKFVPA DSLFLNSFPVTPNSHRVTEMAHSFSNGQRL                     
Sbjct: 254  FLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANE 313

Query: 301  -----------------IFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSD 360
                             IFLSPEKLQSKDLVYQQKKIKDTATSS GLRWIKDVVLGKRSD
Sbjct: 314  LGSRVLDCLKISKAIYKIFLSPEKLQSKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSD 373

Query: 361  HCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRR 420
            HCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRR
Sbjct: 374  HCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRR 433

Query: 421  EGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNP 480
            EGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLNP
Sbjct: 434  EGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNP 493

Query: 481  LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH 540
            LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH
Sbjct: 494  LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH 553

Query: 541  LIMEDGVSLNLFQMQQLQMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSP 600
            LI+EDGVSLNLFQMQQLQMLTLHQLL PAI+K+PLLRNCAWTGKQLFS LLPPDF+YSSP
Sbjct: 554  LILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSP 613

Query: 601  SHCVFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLS 660
            SH VFI+ GELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGLS
Sbjct: 614  SHNVFIEKGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLS 673

Query: 661  VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSI 720
            VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHK+ILTG+DEDNQH+LSI
Sbjct: 674  VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSI 733

Query: 721  AVERLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLV 780
            AVE L YEKQKSAALNQASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KLV
Sbjct: 734  AVEHLIYEKQKSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLV 793

Query: 781  QHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFL 840
            QHSMCLGLQHSLVTLSFSLPHKL+CSAWNSQKMPRYIQ+DGLPDRT SFIPYAVVE+SFL
Sbjct: 794  QHSMCLGLQHSLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFL 853

Query: 841  SGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF 900
            SGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF
Sbjct: 854  SGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF 913

Query: 901  SYDIDRPTSVSNELDGENNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLN 960
             YDIDRPTSVS+E D E NNRDRDIGGHPVGSLAACA SEAAYSALDQPISLLEASPLLN
Sbjct: 914  CYDIDRPTSVSSESDSE-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLN 973

Query: 961  LKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMI-- 1020
            LKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERV+FKDIVS+VMI  
Sbjct: 974  LKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIF 1033

Query: 1021 ------------------------------------------------------------ 1080
                                                                        
Sbjct: 1034 SPQPSRKKHFSPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIIT 1093

Query: 1081 TDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI 1140
             DCPLADSL EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI
Sbjct: 1094 QDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI 1153

Query: 1141 AWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSL 1200
             WNDRPKVPKPRC+HGELYLRVTMSGEGNSRFWATL+NNCLPIMDLIDW+RSHPDNTHSL
Sbjct: 1154 TWNDRPKVPKPRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSL 1213

Query: 1201 CLAYGIDSGWKYFLNSLESATLDIGKTIRPKHLLLVANSLSATGEFIGLNVKGLSHQREH 1260
            CLAYGIDSGWKYFLNSLE ATLDIGKTIR +HLLLVANSLSATGEF+GLNVKGL+HQREH
Sbjct: 1214 CLAYGIDSGWKYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREH 1273

Query: 1261 ALVKTPFMQACFSTPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRG 1320
            ALVKTPFMQACFS+PGAC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+G
Sbjct: 1274 ALVKTPFMQACFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKG 1333

Query: 1321 HELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSV 1380
            HELNKPVDVYNLLGGQS CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDSV
Sbjct: 1334 HELNKPVDVYNLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSV 1393

Query: 1381 SKSILREFLTLNDIQKLSFTLRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGA 1386
            SKSILR+FLTLNDIQKLSF LRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGA
Sbjct: 1394 SKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGA 1453

[Close]

BLAST of HG10003230 vs. NCBI nr
Match: XP_011650447.1 (DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >XP_011650449.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >KGN55963.1 hypothetical protein Csa_010842 [Cucumis sativus])

HSP 1 Score: 2503.4 bits (6487), Expect = 0.0e+00
Identity = 1270/1496 (84.89%), Postives = 1315/1496 (87.90%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            MIHMEDEQDGELPIPSGL+TGINFSVS QQD ENIAV+TVDA+NEVSDPKLGLPNPSYQC
Sbjct: 14   MIHMEDEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSPPHGDV-FEVDSEVEDPTS 120
            TTCGASSLK CEG          +IH            K  P    V  E+  +VEDPTS
Sbjct: 74   TTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTS 133

Query: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPS 180
            DY+RPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQKRVAKGGLPS
Sbjct: 134  DYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPS 193

Query: 181  DYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240
            DYW+FIPKDEQQE+SYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA DSLFLNSFPVTP
Sbjct: 194  DYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTP 253

Query: 241  NSHRVTEMAHSFSNGQRLIF--------------------------------LSPEKLQS 300
            NSHRVTEMAHSFSNGQRLIF                                LSPEKLQ+
Sbjct: 254  NSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQN 313

Query: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360
            KDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 314  KDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 373

Query: 361  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 420
            LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD
Sbjct: 374  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 433

Query: 421  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480
            +VLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 434  IVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 493

Query: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLS 540
            EVRELVSLD+QL NGQSGRNLLSLSHDSLTAAHLI+EDGVSLNLFQMQQLQMLTLHQLL 
Sbjct: 494  EVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLP 553

Query: 541  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNL 600
            PAI+K+PLLRNCAWTGKQLFS LLPPDFDYSSPSH VFI+ GELISSEGSYWLRDSGRNL
Sbjct: 554  PAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEGSYWLRDSGRNL 613

Query: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 660
            FQALIEHCEGKTLDYL DAQGVLCEWLS RGLSVSLSDLYLSVDSYSH+NMMDDIFCGLQ
Sbjct: 614  FQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQ 673

Query: 661  EAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVF 720
            EAEETCNLKQLMVDSHK+IL G+DEDNQH+LSIAVERL YEKQKSAALNQASVDAFKKVF
Sbjct: 674  EAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVF 733

Query: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 780
            RDIQNLVYKYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLSFSLPHKL+C+A
Sbjct: 734  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAA 793

Query: 781  WNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840
            WNSQKMPRYIQKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 794  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGG 900
            GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS   E + ENNNRDR IGG
Sbjct: 854  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS---ESESENNNRDRGIGG 913

Query: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960
            HPVGSLAACA+SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS
Sbjct: 914  HPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 973

Query: 961  KRSYGFEYGALGVKNHLERVIFKDIVSNVMI----------------------------- 1020
            KRSYGFEYGALGVKNHLERV+FKDIVS+VMI                             
Sbjct: 974  KRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKR 1033

Query: 1021 ---------------------------------TDCPLADSLREDGDTVCLTVTIAENTK 1080
                                              DCPLADSL EDGDTVCLTVTIAENTK
Sbjct: 1034 RLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTK 1093

Query: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE 1140
            NSFLQLDFIQDLLIHFLLGTVIRGF EIDRVDI WNDRPKVPKPRC+HGELYLRVTMSGE
Sbjct: 1094 NSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSGE 1153

Query: 1141 GNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKT 1200
            GNSRFWATLMNNCLPIMDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD+GKT
Sbjct: 1154 GNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKT 1213

Query: 1201 IRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGI 1260
            IR +HLLLV+NSLSATGEF+GLNVKGL+HQREHALVKTPFMQACFS+PGAC +KAAKAGI
Sbjct: 1214 IRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGI 1273

Query: 1261 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIE 1320
            KDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQS CEKQN KIE
Sbjct: 1274 KDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIE 1333

Query: 1321 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFTLRTILHK 1380
            SLDKN ISEKYSAQL+LKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQKLSF LRTILHK
Sbjct: 1334 SLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHK 1393

Query: 1381 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSISEVRLSGRLKK 1386
            YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI                       K
Sbjct: 1394 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI-----------------------K 1453

[Close]

BLAST of HG10003230 vs. NCBI nr
Match: XP_038905043.1 (DNA-directed RNA polymerase IV subunit 1 isoform X3 [Benincasa hispida] >XP_038905044.1 DNA-directed RNA polymerase IV subunit 1 isoform X3 [Benincasa hispida])

HSP 1 Score: 2484.9 bits (6439), Expect = 0.0e+00
Identity = 1262/1464 (86.20%), Postives = 1292/1464 (88.25%), Query Frame = 0


Query: 33   ENIAVMTVDASNEVSDPKLGLPNPSYQCTTCGASSLKSCEG------LTRGVIHS----- 92
            ENIAV+TVDA++EVSDPKLGLPNPSYQCTTCGASSLKSCEG          +IH      
Sbjct: 14   ENIAVLTVDAASEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSE 73

Query: 93   -----TKDSPPHGDV-FEVDSEVEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF 152
                  K  P    +  E+  +VEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF
Sbjct: 74   VAQVLNKVCPGCKSIRQELWGKVEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF 133

Query: 153  RKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEDSYCRPNRKILTHAQVHYL 212
            RKSMIMVEVKENMSKKYQK+VAKGGLPSDYWNFIPKDEQQE+SYCRPNRKILTHAQVHYL
Sbjct: 134  RKSMIMVEVKENMSKKYQKKVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYL 193

Query: 213  LKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIF------------ 272
            LKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTE+ HSFSNGQRLIF            
Sbjct: 194  LKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTELTHSFSNGQRLIFDERTRAYKKVVD 253

Query: 273  --------------------LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS 332
                                LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS
Sbjct: 254  FRGTANELGSRILDCLKISKLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRS 313

Query: 333  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVR 392
            DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYL+LV KGEI+VR
Sbjct: 314  DHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLNLVVKGEIFVR 373

Query: 393  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLN 452
            REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIAL VKLLPVSSVLSLN
Sbjct: 374  REGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALYVKLLPVSSVLSLN 433

Query: 453  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 512
            PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA
Sbjct: 434  PLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAA 493

Query: 513  HLIMEDGVSLNLFQMQQLQMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSS 572
            HLIMEDGVSLN FQMQQLQML LHQLL PAI+KAPL RNCAWTGKQLFS LLPPDFDYSS
Sbjct: 494  HLIMEDGVSLNAFQMQQLQMLALHQLLPPAIVKAPLFRNCAWTGKQLFSILLPPDFDYSS 553

Query: 573  PSHCVFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL 632
            PSH VFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL
Sbjct: 554  PSHNVFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGL 613

Query: 633  SVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLS 692
            SVSLSDLYLSVDS+SHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTG+DEDNQH+LS
Sbjct: 614  SVSLSDLYLSVDSHSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGNDEDNQHMLS 673

Query: 693  IAVERLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL 752
            I +ERL YEKQKS ALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL
Sbjct: 674  IEMERLIYEKQKSVALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKL 733

Query: 753  VQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSF 812
            VQHSMCLGLQHSLV LSFSLPHKL+CSAWNSQKMPRYIQKDGLPDRT SFIPYAVVE+SF
Sbjct: 734  VQHSMCLGLQHSLVFLSFSLPHKLSCSAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSF 793

Query: 813  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 872
            LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ
Sbjct: 794  LSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQ 853

Query: 873  FSYDIDRPTSVSNELDGENNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL 932
            FSYDIDRPTSVSNELD ENNN+DRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL
Sbjct: 854  FSYDIDRPTSVSNELDSENNNKDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLL 913

Query: 933  NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMI- 992
            NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERV+FKDIVS VMI 
Sbjct: 914  NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSTVMII 973

Query: 993  ------------------------------------------------------------ 1052
                                                                        
Sbjct: 974  FSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNIRCDSVRQEGRMNLPSLQII 1033

Query: 1053 -TDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1112
              DCPLADS+REDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD
Sbjct: 1034 SQDCPLADSVREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVD 1093

Query: 1113 IAWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHS 1172
            IAWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATL+NNCLP+MDLIDWSRSHPDNTHS
Sbjct: 1094 IAWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATLVNNCLPVMDLIDWSRSHPDNTHS 1153

Query: 1173 LCLAYGIDSGWKYFLNSLESATLDIGKTIRPKHLLLVANSLSATGEFIGLNVKGLSHQRE 1232
            LCLAYGIDSGWKYFLNSL SATLDIGKTIR +HLLL+ANSLSATGEF+GLNVKGLSHQRE
Sbjct: 1154 LCLAYGIDSGWKYFLNSLVSATLDIGKTIRLEHLLLIANSLSATGEFVGLNVKGLSHQRE 1213

Query: 1233 HALVKTPFMQACFSTPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGR 1292
            HALVKTPFMQACFS+PGACFVKAAKAG KDNLSGSLDALAWGRIPSLGTGGQFDILYSGR
Sbjct: 1214 HALVKTPFMQACFSSPGACFVKAAKAGSKDNLSGSLDALAWGRIPSLGTGGQFDILYSGR 1273

Query: 1293 GHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDS 1352
            GHELNKPVDVYNLLGGQS CEKQNAKI SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+
Sbjct: 1274 GHELNKPVDVYNLLGGQSTCEKQNAKIGSLDKNNISEKYSAQLVLKNGGSTIKGLKKLDN 1333

Query: 1353 VSKSILREFLTLNDIQKLSFTLRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1386
            VSKSILREFLTLNDIQKLSF LRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG
Sbjct: 1334 VSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVG 1393

[Close]

BLAST of HG10003230 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 1271.9 bits (3290), Expect = 0.0e+00
Identity = 712/1492 (47.72%), Postives = 936/1492 (62.73%), Query Frame = 0


Query: 4    MEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQCTTC 63
            MED+ + EL +P G +T I FS+S   D + ++V+ V+A N+V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 64   GASSLKSCEGLTRGVIHSTKDSPPHGDVFEVDSEVED--PTSDYHR----------PKGC 123
            G+   K CEG   GVI+          + EV + +    P   Y R          P+ C
Sbjct: 61   GSKDRKVCEG-HFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITEDQPERC 120

Query: 124  RYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPK 183
            RYC  +L   YP M+F+++T ++FR+S I+VEV E    K +KR     LP DYW+F+P+
Sbjct: 121  RYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYWSFLPQ 180

Query: 184  DEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTEM 243
            D   ++S  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +RVTE+
Sbjct: 181  DSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRVTEI 240

Query: 244  AHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS------- 303
             H F NG RLIF    ++  K                + +   +   +T +SS       
Sbjct: 241  VHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPY 300

Query: 304  ---------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLS 363
                      GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+SEHL+
Sbjct: 301  QKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLN 360

Query: 364  SWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPP 423
              N ++L TS    L++  E++VRR  RLV ++ V +L  GD I+R L DGD VL+NRPP
Sbjct: 361  QCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLMNRPP 420

Query: 424  SIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSL 483
            SIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ ELV+L
Sbjct: 421  SIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVAL 480

Query: 484  DRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVSLNLFQMQQLQMLTLHQLLSPAILKA- 543
            D+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL  PAI+KA 
Sbjct: 481  DKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKAS 540

Query: 544  PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELIS-SEGSYWLRDSGRNLFQALI 603
            P      WTG QLF  L PP FDY+ P + V + NGEL+S SEGS WLRD   N  + L+
Sbjct: 541  PSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLL 600

Query: 604  EHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEET 663
            +H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+EAE+ 
Sbjct: 601  KHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQV 660

Query: 664  CNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVFRDIQN 723
            CN +QLMV+S +D L  + ED +      + R  YE+QKSA L++ +V AFK  +RD+Q 
Sbjct: 661  CNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQA 720

Query: 724  LVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQK 783
            L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+AWN   
Sbjct: 721  LAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWNDPN 780

Query: 784  MPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTR 843
             P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++PGTL+R
Sbjct: 781  SPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSR 840

Query: 844  KLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGGHPVGS 903
            +L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G  +GS
Sbjct: 841  RLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITGEALGS 900

Query: 904  LAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYG 963
            L+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LSK+ +G
Sbjct: 901  LSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHG 960

Query: 964  FEYGALGVKNHLERVIFKDIVSNVMI-------TDCPLA--------------------- 1023
            FEYG+L +KNHLE++ F +IVS  MI       T  PL+                     
Sbjct: 961  FEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAE 1020

Query: 1024 ---DSLRED-------------------------------GDTVCLTVTIAENTKNSFLQ 1083
                SL E                                 D VC+TVT+ E +K+S L+
Sbjct: 1021 SVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLE 1080

Query: 1084 LDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNH--GELYLRVTMSGE-GN 1143
            LD I+ +LI FLL + ++G   I +V+I W DRPK PK   NH  GELYL+VTM G+ G 
Sbjct: 1081 LDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGK 1140

Query: 1144 SRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIR 1203
               W  L+  CLPIMD+IDW RSHPDN    C  YGID+G   F+ +LESA  D GK I 
Sbjct: 1141 RNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEIL 1200

Query: 1204 PKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGIKD 1263
             +HLLLVA+SLS TGEF+ LN KG S QR+      PF QACFS+P  CF+KAAK G++D
Sbjct: 1201 REHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRD 1260

Query: 1264 NLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESL 1323
            +L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N+  +  
Sbjct: 1261 DLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPK-- 1320

Query: 1324 DKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFTLRTILHK 1382
                 S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L+ ILH 
Sbjct: 1321 -----SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKRILHS 1380

[Close]

BLAST of HG10003230 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 4.0e-84
Identity = 343/1356 (25.29%), Postives = 551/1356 (40.63%), Query Frame = 0


Query: 4    MEDEQDGELPIPSGLVTGINFSVSTQQD--TENIAVMTVDASNEVSDPKLGLPNPSYQCT 63
            ME+E   E  I  G + GI F++++  +   ++I+   ++  +++++  LGLP    +C 
Sbjct: 1    MEEESTSE--ILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCE 60

Query: 64   TCGASSLKSCEGLTRGVIHSTKDSPPHGDVFEVDSEVEDPTSDYHRPKGCRYCFGSLKDW 123
            +CGA+    CEG   G I           V E+   +        + K  +   G L D 
Sbjct: 61   SCGATEPDKCEG-HFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLAD- 120

Query: 124  YPPMRFKLSTTDMFRKSMIMVEVKENMSKKY--QKRVAKGGLPSDYWNFIPKDEQQEDS- 183
                  +L        S I ++ + +    Y   K  ++  L    WNF+ +   +  S 
Sbjct: 121  ------RLLGVCCEEASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSD 180

Query: 184  YCRPNRKILTHAQVHYLLKDIDPKFLKKFVP----ATDSLFLNSFPVTPNSHRVTEMAHS 243
            Y RP    L   +V  +L+ I  +  KK         +   L   PV PN   V E +  
Sbjct: 181  YTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDG 240

Query: 244  FSNGQRLIFLSPEKLQSKDLV--------------------------------------- 303
            FS     + + P +++ KD++                                       
Sbjct: 241  FST----MSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGT 300

Query: 304  ----------YQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIP 363
                      Y   KI D+++S      ++ + + K S    R V+ GD    ++E+GIP
Sbjct: 301  AKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIP 360

Query: 364  CHVAERLQISEHLSSWN----MKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGD 423
              +A+R+   E +S  N     K +     L   +    Y  R+G     +   EL  G 
Sbjct: 361  IEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGSTTYSLRDGS----KGHTELKPGQ 420

Query: 424  TIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHG 483
             ++R + DGDVV +NRPP+ H+HSL AL V  +   + + +NPL CSP   DFDGDC+H 
Sbjct: 421  VVHRRVMDGDVVFINRPPTTHKHSLQALRV-YVHEDNTVKINPLMCSPLSADFDGDCVHL 480

Query: 484  YVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQL 543
            + PQSL A+ EV EL S+++QL++  +G+ +L +  DSL +  +++E  V L+    QQL
Sbjct: 481  FYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKATAQQL 540

Query: 544  QMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGS 603
             M     L  PA+ K+      AWT  Q+     P     S       +   +L+  +  
Sbjct: 541  AMYGSLSLPPPALRKSS-KSGPAWTVFQILQLAFPERL--SCKGDRFLVDGSDLLKFDFG 600

Query: 604  YWLRDSGRN--LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSH 663
                 S  N  +    +E    +TL +    Q +L E L   G S+SL DL     S S 
Sbjct: 601  VDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDL-----SMSR 660

Query: 664  KNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAAL 723
             +M  D+   L   E +  + +L + S++D L  ++              S  K K  A 
Sbjct: 661  ADM--DVIHNLIIREISPMVSRLRL-SYRDELQLEN--------------SIHKVKEVAA 720

Query: 724  NQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTL 783
            N      F      I+NL+     K NS +T           KLVQ +  LGLQ S    
Sbjct: 721  N------FMLKSYSIRNLI---DIKSNSAIT-----------KLVQQTGFLGLQLSDKKK 780

Query: 784  SFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTN 843
             ++       + +  +K  R I   G          + +V+  F  GL+P+E  AHS+  
Sbjct: 781  FYTKTLVEDMAIFCKRKYGR-ISSSG---------DFGIVKGCFFHGLDPYEEMAHSIAA 840

Query: 844  RD--SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNE 903
            R+     S     PGTL + L  ++RDI    DGTVRN   N ++QF Y +         
Sbjct: 841  REVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGV--------- 900

Query: 904  LDGENNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLN-----LKRVLEC- 963
             D E  ++     G PVG LAA AMS  AY A      +L++SP  N     +K VL C 
Sbjct: 901  -DSERGHQGLFEAGEPVGVLAATAMSNPAYKA------VLDSSPNSNSSWELMKEVLLCK 960

Query: 964  -GSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMI-------- 1023
               +  +  +   L+L+E    + +  E  A  V+N L +V  KD     ++        
Sbjct: 961  VNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTI 1020

Query: 1024 --------------------------------------------------TD-------- 1083
                                                              TD        
Sbjct: 1021 SEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLS 1080

Query: 1084 ----CPLADSLREDG-DTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDR 1143
                C   D     G D  CLT +      +    LD + + +   LL  VI+G + I  
Sbjct: 1081 VSECCSFRDPCGSKGSDMPCLTFSYNATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICS 1140

Query: 1144 VDIAWNDRPKVPKPRCNH----GELYLRVTMSGEG---NSRFWATLMNNCLPIMDLIDWS 1203
             +I WN        R  H    GE  L VT+       +   W  ++++CL ++ LID  
Sbjct: 1141 ANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTK 1200

Query: 1204 RSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRPKHLLLVANSLSATGEFIGLN 1207
            RS P +   +    G+   ++  +  L ++   + K +  +H++L+AN+++ +G  +G N
Sbjct: 1201 RSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFN 1259

[Close]

BLAST of HG10003230 vs. ExPASy Swiss-Prot
Match: P17546 (DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei brucei OX=5702 GN=TRP4.8 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.3e-47
Identity = 162/594 (27.27%), Postives = 281/594 (47.31%), Query Frame = 0


Query: 259 KKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHL 318
           K + +     YG   ++  ++GKR D   R V+ GDPNI++ E+G+P  VA  L   E +
Sbjct: 331 KSLTERLKGKYGR--LRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 390

Query: 319 SSWNMKKLSTSCYLHLVEKGEIYVRREG------RLVRVRNVLELNMGDTIYRPLADGDV 378
           ++ N K+L T      V     Y+           L+R R+ + LN+GD + R + +GDV
Sbjct: 391 NTVNKKRL-TEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDV 450

Query: 379 VLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVE 438
           VL NR P++H+ S++   V++L  S+   LN  C +P+  DFDGD ++ +VPQSL  + E
Sbjct: 451 VLFNRQPTLHRMSMMGHRVRVLNYST-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 510

Query: 439 VRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQM-LTLHQLLS 498
           + E++ + +  ++       + +  DSL  ++ + +    L+ + +Q + + L L QL  
Sbjct: 511 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 570

Query: 499 PAILKAPLLRNCAWTGKQLFSTLLP-----------PDFDYSSPSHCVFIKNGELISSEG 558
           PAILK   L    WTGKQ+FS +LP           P F ++     V I+ G+L+    
Sbjct: 571 PAILKPRPL----WTGKQVFSLILPEVNHPATPQDRPPFPHN--DSVVMIRRGQLLCGPI 630

Query: 559 SYWLRDS--GRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYS 618
           +  +  +  G  +     EH   +   +++  Q V   +L   G SV + D     D+  
Sbjct: 631 TKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTL- 690

Query: 619 HKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAA 678
               M+D+    +      N++++   ++   L      N+      ++  S+E   ++A
Sbjct: 691 --RQMNDVLVKTRR-----NVEKIGAAANNRTL------NRKAGMTLLQ--SFEADVNSA 750

Query: 679 LNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVT 738
           LN+   +A KK   +++        + NS   M +AGSKG  L + Q ++ +G Q+    
Sbjct: 751 LNKCREEAAKKALSNVR--------RTNSFKVMIEAGSKGTDLNICQIAVFVGQQN---V 810

Query: 739 LSFSLPHKLTCSAWNSQKMPRYIQKD-GLPDRTPSFIPYAVVESSFLSGLNPFECFAHSV 798
               +P       +  + +P ++  D G   R        +    ++ GL P E F H++
Sbjct: 811 AGSRIPF-----GFRRRTLPHFMLDDYGETSR-------GMANRGYVEGLKPHEFFFHTM 870

Query: 799 TNRDSSFSDNAEV--PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDID 830
             R+       +    G L RKL   + D++ AYDGTVRNA  ++L+QF Y  D
Sbjct: 871 AGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNA-NDELIQFMYGED 874

[Close]

BLAST of HG10003230 vs. ExPASy Swiss-Prot
Match: P17545 (DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei brucei OX=5702 GN=TRP5.9 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.1e-47
Identity = 161/594 (27.10%), Postives = 281/594 (47.31%), Query Frame = 0


Query: 259 KKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHL 318
           K + +     YG   ++  ++GKR D   R V+ GDPNI++ E+G+P  VA  L   E +
Sbjct: 331 KSLTERLKGKYGR--LRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 390

Query: 319 SSWNMKKLSTSCYLHLVEKGEIYVRREG------RLVRVRNVLELNMGDTIYRPLADGDV 378
           ++ N K+L T      V     Y+           L+R R+ + LN+GD + R + +GDV
Sbjct: 391 NTINKKRL-TEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDV 450

Query: 379 VLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVE 438
           VL NR P++H+ S++   V++L  ++   LN  C +P+  DFDGD ++ +VPQSL  + E
Sbjct: 451 VLFNRQPTLHRMSMMGHRVRVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAE 510

Query: 439 VRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQM-LTLHQLLS 498
           + E++ + +  ++       + +  DSL  ++ + +    L+ + +Q + + L L QL  
Sbjct: 511 LIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPI 570

Query: 499 PAILKAPLLRNCAWTGKQLFSTLLP-----------PDFDYSSPSHCVFIKNGELISSEG 558
           PAILK   L    WTGKQ+FS +LP           P F ++     V I+ G+L+    
Sbjct: 571 PAILKPRPL----WTGKQVFSLILPEVNHPATPQDRPPFPHN--DSVVMIRRGQLLCGPI 630

Query: 559 SYWLRDS--GRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYS 618
           +  +  +  G  +     EH   +   +++  Q V   +L   G SV + D     D+  
Sbjct: 631 TKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTL- 690

Query: 619 HKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAA 678
               M+D+    +      N++++   ++   L      N+      ++  S+E   ++A
Sbjct: 691 --RQMNDVLVKTRR-----NVEKIGAAANNRTL------NRKAGMTLLQ--SFEADVNSA 750

Query: 679 LNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVT 738
           LN+   +A KK   +++        + NS   M +AGSKG  L + Q ++ +G Q+    
Sbjct: 751 LNKCREEAAKKALSNVR--------RTNSFKVMIEAGSKGTDLNICQIAVFVGQQN---V 810

Query: 739 LSFSLPHKLTCSAWNSQKMPRYIQKD-GLPDRTPSFIPYAVVESSFLSGLNPFECFAHSV 798
               +P       +  + +P ++  D G   R        +    ++ GL P E F H++
Sbjct: 811 AGSRIPF-----GFRRRTLPHFMLDDYGETSR-------GMANRGYVEGLKPHEFFFHTM 870

Query: 799 TNRDSSFSDNAEV--PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDID 830
             R+       +    G L RKL   + D++ AYDGTVRNA  ++L+QF Y  D
Sbjct: 871 AGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNA-NDELIQFMYGED 874

[Close]

BLAST of HG10003230 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-46
Identity = 161/603 (26.70%), Postives = 273/603 (45.27%), Query Frame = 0


Query: 274 IKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLH 333
           I+  ++GKR D   R V+  DPN+ + ++G+P  +A  L   E ++ +N+ K+       
Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMR-----E 400

Query: 334 LVEKG-------EIYVRREG-----RLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSI 393
           L+  G       +  +R +G     R V+  +   L  G  + R + DGDVV+ NR PS+
Sbjct: 401 LIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSL 460

Query: 394 HQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDR 453
           H+ S++   +K++P S+   LN    SP+  DFDGD ++ +VPQ+LE R EV E++ + R
Sbjct: 461 HKMSMMGHRIKVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPR 520

Query: 454 QLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLS-------PAI 513
           Q+++ QS R ++ +  D+L  + L        + F  + L M  L  L S       PAI
Sbjct: 521 QIVSPQSNRPVMGIVQDTLLGSRLF----TKRDCFMEKDLVMNILMWLPSWDGKVPPPAI 580

Query: 514 LKAPLLRNCAWTGKQLFSTLLP--------PDFDYSSPSHC------VFIKNGELISSEG 573
           LK   L    WTGKQLFS ++P           +   P+ C      V I+ GEL++  G
Sbjct: 581 LKPKQL----WTGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLA--G 640

Query: 574 SYWLRD----SGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLY----- 633
               R     +G  +   + EH       ++   Q V+  WL  RG ++ + D       
Sbjct: 641 ILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSAT 700

Query: 634 ---LSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVER 693
              +++   S KN + ++    Q  +  C   + +++                       
Sbjct: 701 MAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIE----------------------- 760

Query: 694 LSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSM 753
            ++E++ +  LN+A   A       +         +DN+L  M  AGSKG+ + + Q   
Sbjct: 761 -TFEQKVNQVLNKARDTAGSSAQDSL--------SEDNNLKAMVTAGSKGSFINISQMMA 820

Query: 754 CLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLN 813
           C+G Q        ++  K     + S+ +P + + D  P+          VE+S+L GL 
Sbjct: 821 CVGQQ--------NVEGKRIPFGFQSRTLPHFTKDDYGPESR------GFVENSYLRGLT 880

Query: 814 PFECFAHSVTNRDSSFSDNAEV--PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSY 830
           P E F H++  R+       +    G + R+L   M D+   YD TVRN+ G+ ++QF+Y
Sbjct: 881 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAY 880

[Close]

BLAST of HG10003230 vs. ExPASy TrEMBL
Match: A0A5D3D780 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00770 PE=4 SV=1)

HSP 1 Score: 2505.7 bits (6493), Expect = 0.0e+00
Identity = 1278/1523 (83.91%), Postives = 1320/1523 (86.67%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            MIHMEDEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA++EVSDPKLGLPNPSYQC
Sbjct: 14   MIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSP------------------ 120
            TTCGASSLK CEG          +IH            K  P                  
Sbjct: 74   TTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVRKKMM 133

Query: 121  ----PHGDVFEVDSEVEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMV 180
                 +   FE+   VEDPTSDY+RPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMV
Sbjct: 134  TLCHRNSSPFEIFIWVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMV 193

Query: 181  EVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPK 240
            EVKENMSKKYQKRVAKGGLPSDYW+FIPKDEQQE+SYCRPNRKILTHAQVHYLLKDIDPK
Sbjct: 194  EVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPK 253

Query: 241  FLKKFVPATDSLFLNSFPVTPNSHRVTEMAHSFSNGQRL--------------------- 300
            FLKKFVPA DSLFLNSFPVTPNSHRVTEMAHSFSNGQRL                     
Sbjct: 254  FLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANE 313

Query: 301  -----------------IFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSD 360
                             IFLSPEKLQSKDLVYQQKKIKDTATSS GLRWIKDVVLGKRSD
Sbjct: 314  LGSRVLDCLKISKAIYKIFLSPEKLQSKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSD 373

Query: 361  HCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRR 420
            HCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRR
Sbjct: 374  HCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRR 433

Query: 421  EGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNP 480
            EGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLNP
Sbjct: 434  EGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNP 493

Query: 481  LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH 540
            LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH
Sbjct: 494  LCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH 553

Query: 541  LIMEDGVSLNLFQMQQLQMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSP 600
            LI+EDGVSLNLFQMQQLQMLTLHQLL PAI+K+PLLRNCAWTGKQLFS LLPPDF+YSSP
Sbjct: 554  LILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSP 613

Query: 601  SHCVFIKNGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLS 660
            SH VFI+ GELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGLS
Sbjct: 614  SHNVFIEKGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLS 673

Query: 661  VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSI 720
            VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHK+ILTG+DEDNQH+LSI
Sbjct: 674  VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSI 733

Query: 721  AVERLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLV 780
            AVE L YEKQKSAALNQASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KLV
Sbjct: 734  AVEHLIYEKQKSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLV 793

Query: 781  QHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFL 840
            QHSMCLGLQHSLVTLSFSLPHKL+CSAWNSQKMPRYIQ+DGLPDRT SFIPYAVVE+SFL
Sbjct: 794  QHSMCLGLQHSLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFL 853

Query: 841  SGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF 900
            SGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF
Sbjct: 854  SGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF 913

Query: 901  SYDIDRPTSVSNELDGENNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLN 960
             YDIDRPTSVS+E D E NNRDRDIGGHPVGSLAACA SEAAYSALDQPISLLEASPLLN
Sbjct: 914  CYDIDRPTSVSSESDSE-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLN 973

Query: 961  LKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMI-- 1020
            LKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERV+FKDIVS+VMI  
Sbjct: 974  LKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIF 1033

Query: 1021 ------------------------------------------------------------ 1080
                                                                        
Sbjct: 1034 SPQPSRKKHFSPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIIT 1093

Query: 1081 TDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI 1140
             DCPLADSL EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI
Sbjct: 1094 QDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI 1153

Query: 1141 AWNDRPKVPKPRCNHGELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSL 1200
             WNDRPKVPKPRC+HGELYLRVTMSGEGNSRFWATL+NNCLPIMDLIDW+RSHPDNTHSL
Sbjct: 1154 TWNDRPKVPKPRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSL 1213

Query: 1201 CLAYGIDSGWKYFLNSLESATLDIGKTIRPKHLLLVANSLSATGEFIGLNVKGLSHQREH 1260
            CLAYGIDSGWKYFLNSLE ATLDIGKTIR +HLLLVANSLSATGEF+GLNVKGL+HQREH
Sbjct: 1214 CLAYGIDSGWKYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREH 1273

Query: 1261 ALVKTPFMQACFSTPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRG 1320
            ALVKTPFMQACFS+PGAC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+G
Sbjct: 1274 ALVKTPFMQACFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKG 1333

Query: 1321 HELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSV 1380
            HELNKPVDVYNLLGGQS CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDSV
Sbjct: 1334 HELNKPVDVYNLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSV 1393

Query: 1381 SKSILREFLTLNDIQKLSFTLRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGA 1386
            SKSILR+FLTLNDIQKLSF LRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGA
Sbjct: 1394 SKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGA 1453

[Close]

BLAST of HG10003230 vs. ExPASy TrEMBL
Match: A0A0A0L2L4 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_3G039340 PE=4 SV=1)

HSP 1 Score: 2503.4 bits (6487), Expect = 0.0e+00
Identity = 1270/1496 (84.89%), Postives = 1315/1496 (87.90%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            MIHMEDEQDGELPIPSGL+TGINFSVS QQD ENIAV+TVDA+NEVSDPKLGLPNPSYQC
Sbjct: 14   MIHMEDEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSPPHGDV-FEVDSEVEDPTS 120
            TTCGASSLK CEG          +IH            K  P    V  E+  +VEDPTS
Sbjct: 74   TTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTS 133

Query: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPS 180
            DY+RPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQKRVAKGGLPS
Sbjct: 134  DYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPS 193

Query: 181  DYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240
            DYW+FIPKDEQQE+SYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA DSLFLNSFPVTP
Sbjct: 194  DYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTP 253

Query: 241  NSHRVTEMAHSFSNGQRLIF--------------------------------LSPEKLQS 300
            NSHRVTEMAHSFSNGQRLIF                                LSPEKLQ+
Sbjct: 254  NSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQN 313

Query: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360
            KDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 314  KDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 373

Query: 361  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 420
            LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD
Sbjct: 374  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 433

Query: 421  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480
            +VLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 434  IVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 493

Query: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLS 540
            EVRELVSLD+QL NGQSGRNLLSLSHDSLTAAHLI+EDGVSLNLFQMQQLQMLTLHQLL 
Sbjct: 494  EVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLP 553

Query: 541  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNL 600
            PAI+K+PLLRNCAWTGKQLFS LLPPDFDYSSPSH VFI+ GELISSEGSYWLRDSGRNL
Sbjct: 554  PAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEGSYWLRDSGRNL 613

Query: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 660
            FQALIEHCEGKTLDYL DAQGVLCEWLS RGLSVSLSDLYLSVDSYSH+NMMDDIFCGLQ
Sbjct: 614  FQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQ 673

Query: 661  EAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVF 720
            EAEETCNLKQLMVDSHK+IL G+DEDNQH+LSIAVERL YEKQKSAALNQASVDAFKKVF
Sbjct: 674  EAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVF 733

Query: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 780
            RDIQNLVYKYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLSFSLPHKL+C+A
Sbjct: 734  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAA 793

Query: 781  WNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840
            WNSQKMPRYIQKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 794  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGG 900
            GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS   E + ENNNRDR IGG
Sbjct: 854  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS---ESESENNNRDRGIGG 913

Query: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960
            HPVGSLAACA+SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS
Sbjct: 914  HPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 973

Query: 961  KRSYGFEYGALGVKNHLERVIFKDIVSNVMI----------------------------- 1020
            KRSYGFEYGALGVKNHLERV+FKDIVS+VMI                             
Sbjct: 974  KRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKR 1033

Query: 1021 ---------------------------------TDCPLADSLREDGDTVCLTVTIAENTK 1080
                                              DCPLADSL EDGDTVCLTVTIAENTK
Sbjct: 1034 RLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTK 1093

Query: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGE 1140
            NSFLQLDFIQDLLIHFLLGTVIRGF EIDRVDI WNDRPKVPKPRC+HGELYLRVTMSGE
Sbjct: 1094 NSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSGE 1153

Query: 1141 GNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKT 1200
            GNSRFWATLMNNCLPIMDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNSLESATLD+GKT
Sbjct: 1154 GNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKT 1213

Query: 1201 IRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGI 1260
            IR +HLLLV+NSLSATGEF+GLNVKGL+HQREHALVKTPFMQACFS+PGAC +KAAKAGI
Sbjct: 1214 IRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGI 1273

Query: 1261 KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIE 1320
            KDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQS CEKQN KIE
Sbjct: 1274 KDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIE 1333

Query: 1321 SLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFTLRTILHK 1380
            SLDKN ISEKYSAQL+LKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQKLSF LRTILHK
Sbjct: 1334 SLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHK 1393

Query: 1381 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSISEVRLSGRLKK 1386
            YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI                       K
Sbjct: 1394 YSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI-----------------------K 1453

[Close]

BLAST of HG10003230 vs. ExPASy TrEMBL
Match: A0A1S4DY39 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103490982 PE=4 SV=1)

HSP 1 Score: 2479.5 bits (6425), Expect = 0.0e+00
Identity = 1266/1506 (84.06%), Postives = 1310/1506 (86.99%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            MIHMEDEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA++EVSDPKLGLPNPSYQC
Sbjct: 14   MIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSPPHGDV-FEVDSEVEDPTS 120
            TTCGASSLK CEG          +IH            K  P    +  E+  +VEDPTS
Sbjct: 74   TTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTS 133

Query: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPS 180
            DY+RPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQKRVAKGGLPS
Sbjct: 134  DYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPS 193

Query: 181  DYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240
            DYW+FIPKDEQQE+SYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA DSLFLNSFPVTP
Sbjct: 194  DYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTP 253

Query: 241  NSHRVTEMAHSFSNGQRLIF---------------------------LSPEKLQSKDLVY 300
            NSHRVTEMAHSFSNGQRLIF                           L   K   K  V+
Sbjct: 254  NSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYKIFVF 313

Query: 301  ---------------QQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSE 360
                             KKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSE
Sbjct: 314  CLNHPREVTKXRFGLPAKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSE 373

Query: 361  IGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGD 420
            IGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGD
Sbjct: 374  IGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGD 433

Query: 421  TIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHG 480
            TIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLHG
Sbjct: 434  TIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHG 493

Query: 481  YVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQL 540
            YVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI+EDGVSLNLFQMQQL
Sbjct: 494  YVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQL 553

Query: 541  QMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGS 600
            QMLTLHQLL PAI+K+PLLRNCAWTGKQLFS LLPPDF+YSSPSH VFI+ GELISSEGS
Sbjct: 554  QMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFIEKGELISSEGS 613

Query: 601  YWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKN 660
            YWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKN
Sbjct: 614  YWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKN 673

Query: 661  MMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQ 720
            MMDDIFCGLQEAEETCNLKQLMVDSHK+ILTG+DEDNQH+LSIAVE L YEKQKSAALNQ
Sbjct: 674  MMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSIAVEHLIYEKQKSAALNQ 733

Query: 721  ASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSF 780
            ASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLSF
Sbjct: 734  ASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSF 793

Query: 781  SLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRD 840
            SLPHKL+CSAWNSQKMPRYIQ+DGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRD
Sbjct: 794  SLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRD 853

Query: 841  SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGE 900
            SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTSVS+E D E
Sbjct: 854  SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSVSSESDSE 913

Query: 901  NNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQT 960
             NNRDRDIGGHPVGSLAACA SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQT
Sbjct: 914  -NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQT 973

Query: 961  FSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMI------------------- 1020
            FSLFLSEKLSKRSYGFEYGALGVKNHLERV+FKDIVS+VMI                   
Sbjct: 974  FSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPQPSRKKHFSPWVCHF 1033

Query: 1021 -------------------------------------------TDCPLADSLREDGDTVC 1080
                                                        DCPLADSL EDGDTVC
Sbjct: 1034 HVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLTEDGDTVC 1093

Query: 1081 LTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGE 1140
            LTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI WNDRPKVPKPRC+HGE
Sbjct: 1094 LTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDITWNDRPKVPKPRCSHGE 1153

Query: 1141 LYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSL 1200
            LYLRVTMSGEGNSRFWATL+NNCLPIMDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNSL
Sbjct: 1154 LYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSL 1213

Query: 1201 ESATLDIGKTIRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGA 1260
            E ATLDIGKTIR +HLLLVANSLSATGEF+GLNVKGL+HQREHALVKTPFMQACFS+PGA
Sbjct: 1214 ECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGA 1273

Query: 1261 CFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQS 1320
            C +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQS
Sbjct: 1274 CLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQS 1333

Query: 1321 ICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKL 1380
             CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQKL
Sbjct: 1334 TCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKL 1393

Query: 1381 SFTLRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSIS 1386
            SF LRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI              
Sbjct: 1394 SFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDI-------------- 1453

[Close]

BLAST of HG10003230 vs. ExPASy TrEMBL
Match: A0A6J1FKU9 (DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444908 PE=4 SV=1)

HSP 1 Score: 2384.0 bits (6177), Expect = 0.0e+00
Identity = 1213/1497 (81.03%), Postives = 1278/1497 (85.37%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            M HMEDEQD EL IPSG++ G+NFSVSTQQD ENIAV+ ++A+ EVSDPKLGLPNPSYQC
Sbjct: 14   MNHMEDEQDSELQIPSGVLVGVNFSVSTQQDMENIAVINIEAACEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSPPHGDV-FEVDSEVEDPTS 120
            TTCGAS LK CEG          +IH            K  P    +  E+  +VEDPTS
Sbjct: 74   TTCGASVLKCCEGHFGAIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRRELWGKVEDPTS 133

Query: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPS 180
            D+HRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVA+GGLP 
Sbjct: 134  DFHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVARGGLPP 193

Query: 181  DYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240
            DYWNFIPKDEQQE+SYCRPNRK+LTHAQVHYLLKDIDPKFLKKFV ATDSLFLNSFPVTP
Sbjct: 194  DYWNFIPKDEQQEESYCRPNRKVLTHAQVHYLLKDIDPKFLKKFVSATDSLFLNSFPVTP 253

Query: 241  NSHRVTEMAHSFSNGQRLIF--------------------------------LSPEKLQS 300
            N HRVTEM HSFS+GQRL+F                                LSPEKL+S
Sbjct: 254  NCHRVTEMTHSFSSGQRLVFDERTRAYKKLVDFRGTANELGSRVLDCLKISKLSPEKLES 313

Query: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360
            KDL+YQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 314  KDLIYQQKKIKDTATSSNGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 373

Query: 361  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 420
            LQISEHLSSWNMKKLSTSCYL LVEKGEI+VRREGRLVRVR+VLEL+MGDTIYRPLADGD
Sbjct: 374  LQISEHLSSWNMKKLSTSCYLRLVEKGEIFVRREGRLVRVRHVLELSMGDTIYRPLADGD 433

Query: 421  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480
            VVLVNRPPSIHQHSLIALSV++LPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 434  VVLVNRPPSIHQHSLIALSVRVLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 493

Query: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLS 540
            E+RELV+LDRQL+NGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQ+QQLQM  LHQLL 
Sbjct: 494  ELRELVALDRQLVNGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQIQQLQMFALHQLLP 553

Query: 541  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNL 600
            PAI+KAP  R+CAWTGKQLFS  LPPDFDYSSPSH V IKNGEL+SSEGSYWLRD+GRN 
Sbjct: 554  PAIVKAPSFRSCAWTGKQLFSIFLPPDFDYSSPSHRVHIKNGELLSSEGSYWLRDTGRNP 613

Query: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 660
            FQALIEHCEG+TL+YLH AQ VLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQ
Sbjct: 614  FQALIEHCEGRTLNYLHIAQRVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQ 673

Query: 661  EAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVF 720
            EAEETCNL QLMVDSHKD+LTGDDE NQHVLSI VE LSYEKQKSAALNQASVDAFK+VF
Sbjct: 674  EAEETCNLIQLMVDSHKDVLTGDDEGNQHVLSIEVEHLSYEKQKSAALNQASVDAFKRVF 733

Query: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 780
            R+IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSF LPHKL+CS+
Sbjct: 734  REIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFGLPHKLSCSS 793

Query: 781  WNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840
            WNSQKMPRYIQKDGL DRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 794  WNSQKMPRYIQKDGLADRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGG 900
            GTLTRKLTFLMRDIY AYD TVRNAYGNQLVQFSYD D P S SNELDGENNN +RDIGG
Sbjct: 854  GTLTRKLTFLMRDIYNAYDRTVRNAYGNQLVQFSYDTDSPMSTSNELDGENNNTNRDIGG 913

Query: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960
             PVGSLAACA+SEAAYSALDQPISLLE SPLLNLK+VLECGSKRNS KQTFSLFL EKLS
Sbjct: 914  QPVGSLAACALSEAAYSALDQPISLLETSPLLNLKKVLECGSKRNSPKQTFSLFLLEKLS 973

Query: 961  KRSYGFEYGALGVKNHLERVIFKDIVSNVMI----------------------------- 1020
            KRSYGFEYGALGVKNHLERVIFKDIVS+VMI                             
Sbjct: 974  KRSYGFEYGALGVKNHLERVIFKDIVSSVMIIFAPEPSRKRHFSPWVCHFHVCKEILKKR 1033

Query: 1021 ---------------------------------TDCPLADSLREDGDTVCLTVTIAENTK 1080
                                              DC LADS REDGDTVCLTVTIAENTK
Sbjct: 1034 RLKISSVIHSLNMRCDSVRQEAKINLPFLHISTQDCSLADSSREDGDTVCLTVTIAENTK 1093

Query: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRC-NHGELYLRVTMSG 1140
            NSFLQLDFIQDLLIHFLLGTVIRGFAEID+VDI+WNDRPKVPKP C +HGELYLRVTMSG
Sbjct: 1094 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDKVDISWNDRPKVPKPHCKSHGELYLRVTMSG 1153

Query: 1141 EGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGK 1200
            EGNSRFWATLMN+CLPIMDLIDWSRSHPDN HS C+AYGIDSG  YFLNSLESATLDIGK
Sbjct: 1154 EGNSRFWATLMNHCLPIMDLIDWSRSHPDNIHSFCMAYGIDSGRNYFLNSLESATLDIGK 1213

Query: 1201 TIRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAG 1260
            TIR +HLLLVAN+LSATGEF+GLNVKG+S QREHALVKTPFMQACFS+PGA FVKAAKAG
Sbjct: 1214 TIRHEHLLLVANTLSATGEFVGLNVKGVSRQREHALVKTPFMQACFSSPGASFVKAAKAG 1273

Query: 1261 IKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKI 1320
            IKD+LSGSLDALAWG+IPS+GTGGQFDILYSG+GHELNKPVDVYNLLG Q ICEK N KI
Sbjct: 1274 IKDSLSGSLDALAWGKIPSMGTGGQFDILYSGKGHELNKPVDVYNLLGSQGICEKPNVKI 1333

Query: 1321 ESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFTLRTILH 1380
            ESLDKN I EKYSA +V KNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLS TLR+IL 
Sbjct: 1334 ESLDKNTIYEKYSA-VVHKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSHTLRSILR 1393

Query: 1381 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSISEVRLSGRLK 1386
            KYSLNERLNEVDKSTLMMALYFHP RDEKIGVGAQDI                       
Sbjct: 1394 KYSLNERLNEVDKSTLMMALYFHPQRDEKIGVGAQDI----------------------- 1453

[Close]

BLAST of HG10003230 vs. ExPASy TrEMBL
Match: A0A6J1KSL8 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111498320 PE=4 SV=1)

HSP 1 Score: 2381.3 bits (6170), Expect = 0.0e+00
Identity = 1211/1497 (80.90%), Postives = 1278/1497 (85.37%), Query Frame = 0


Query: 1    MIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQC 60
            M HMEDEQD EL IPSG++ G+NFSVSTQQD ENIAV+ ++A+ EVSDPKLGLPNPSYQC
Sbjct: 14   MNHMEDEQDSELQIPSGVLVGVNFSVSTQQDMENIAVINIEAACEVSDPKLGLPNPSYQC 73

Query: 61   TTCGASSLKSCEG------LTRGVIHS----------TKDSPPHGDV-FEVDSEVEDPTS 120
            TTCGAS LK CEG          +IH            K  P    +  E+  +VEDPTS
Sbjct: 74   TTCGASVLKCCEGHFGAIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRRELWGKVEDPTS 133

Query: 121  DYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPS 180
            D+HRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVA+GGLP 
Sbjct: 134  DFHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVARGGLPP 193

Query: 181  DYWNFIPKDEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTP 240
            DYWNFIPKDEQQE+SYCRPNRK+LTHAQVHYLLKDIDPKFLKKFV ATDSLFLNSFPVTP
Sbjct: 194  DYWNFIPKDEQQEESYCRPNRKVLTHAQVHYLLKDIDPKFLKKFVSATDSLFLNSFPVTP 253

Query: 241  NSHRVTEMAHSFSNGQRLIF--------------------------------LSPEKLQS 300
            N HRVTEM HSFS+GQRL+F                                LSPEKL+S
Sbjct: 254  NCHRVTEMTHSFSSGQRLVFDERTRAYKKLVDFRGTANELGSRVLDCLKISKLSPEKLES 313

Query: 301  KDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 360
            KDL+YQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER
Sbjct: 314  KDLIYQQKKIKDTATSSNGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 373

Query: 361  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGD 420
            LQISEHLSSWNMKKLSTSCYL LVEKGEI+VRREGRLVRVR+VLEL+MGDTIYRPLADGD
Sbjct: 374  LQISEHLSSWNMKKLSTSCYLRLVEKGEIFVRREGRLVRVRHVLELSMGDTIYRPLADGD 433

Query: 421  VVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 480
            VVLVNRPPSIHQHSLIALSV++LPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV
Sbjct: 434  VVLVNRPPSIHQHSLIALSVRVLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARV 493

Query: 481  EVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTLHQLLS 540
            E+RELV+LDRQL+NGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQ+QQLQM  LHQLL 
Sbjct: 494  ELRELVALDRQLVNGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQIQQLQMFALHQLLP 553

Query: 541  PAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGSYWLRDSGRNL 600
            PAI+KAP  R+CAWTGKQLFS  LPPDFDYSSPSH V IKNGEL+SSEGSYWLRD+GRN 
Sbjct: 554  PAIVKAPSFRSCAWTGKQLFSIFLPPDFDYSSPSHRVHIKNGELLSSEGSYWLRDTGRNP 613

Query: 601  FQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 660
            FQALIEHCEG TL+YLH AQ VLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQ
Sbjct: 614  FQALIEHCEGMTLNYLHIAQRVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQ 673

Query: 661  EAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVF 720
            EAEETCNL QLMVDSHKD LTGDDE NQHVLSI VE LSYEKQKSAALNQASVDAFK+VF
Sbjct: 674  EAEETCNLIQLMVDSHKDALTGDDEGNQHVLSIEVEHLSYEKQKSAALNQASVDAFKRVF 733

Query: 721  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSA 780
            R+IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSF LPHKL+CS+
Sbjct: 734  REIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFGLPHKLSCSS 793

Query: 781  WNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 840
            WNSQKMPRYI+KDGL DRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVP
Sbjct: 794  WNSQKMPRYIRKDGLADRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 841  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGG 900
            GTLTRKLTFLMRDIY AYDGTVRNAYGNQLVQFSYD D PTS+SNELDGENNN +RDIGG
Sbjct: 854  GTLTRKLTFLMRDIYNAYDGTVRNAYGNQLVQFSYDTDSPTSISNELDGENNNTNRDIGG 913

Query: 901  HPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLS 960
             PVGSLAACA+SEAAYSALDQPISLLE SPLLNLK+VLECGSKRNS KQ FSLFL EKLS
Sbjct: 914  QPVGSLAACAISEAAYSALDQPISLLETSPLLNLKKVLECGSKRNSPKQIFSLFLLEKLS 973

Query: 961  KRSYGFEYGALGVKNHLERVIFKDIVSNVMI----------------------------- 1020
            KRSYG+EYGALGVKNHLERVIFKDIVS+VMI                             
Sbjct: 974  KRSYGYEYGALGVKNHLERVIFKDIVSSVMIIFAPEPSRKRHFSPWVCHFHVCKEILKKR 1033

Query: 1021 ---------------------------------TDCPLADSLREDGDTVCLTVTIAENTK 1080
                                              DC LADS REDGDTVCLTVTIAENTK
Sbjct: 1034 RLKISSVIHSLNMRCDSMRQEAKINLPFLHISTQDCSLADSSREDGDTVCLTVTIAENTK 1093

Query: 1081 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRC-NHGELYLRVTMSG 1140
            NSFLQLDFIQDLLIHFLLGTVIRGFAEID+VDI+WNDRPKVPKP C +HGELYLRVTMSG
Sbjct: 1094 NSFLQLDFIQDLLIHFLLGTVIRGFAEIDKVDISWNDRPKVPKPHCKSHGELYLRVTMSG 1153

Query: 1141 EGNSRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGK 1200
            EGNSRFWATLMNNCLPIMDLIDWSRSHPDN HS C+AYGIDSG  YFLNSLESATLDIGK
Sbjct: 1154 EGNSRFWATLMNNCLPIMDLIDWSRSHPDNIHSFCMAYGIDSGRNYFLNSLESATLDIGK 1213

Query: 1201 TIRPKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAG 1260
            TIR +HLLLVAN+LSATGEF+GLNVKG+S QREHALVKTPFMQACFS+PGA FVKAAKAG
Sbjct: 1214 TIRHEHLLLVANTLSATGEFVGLNVKGVSRQREHALVKTPFMQACFSSPGASFVKAAKAG 1273

Query: 1261 IKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKI 1320
            IKD+LSGSLDALAWG+IPS+GTGGQFDILYSG+GHEL+KPVDVYNLLG Q ICEK N K+
Sbjct: 1274 IKDSLSGSLDALAWGKIPSMGTGGQFDILYSGKGHELSKPVDVYNLLGSQGICEKPNVKM 1333

Query: 1321 ESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFTLRTILH 1380
            ESLDKN I EKYSA +V KNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLS TLR+IL 
Sbjct: 1334 ESLDKNTIYEKYSA-VVHKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSHTLRSILR 1393

Query: 1381 KYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPTMQCLFSLGSISEVRLSGRLK 1386
            KYSLNERLNEVDKSTLMMALYFHP RDEKIGVGAQDI                       
Sbjct: 1394 KYSLNERLNEVDKSTLMMALYFHPQRDEKIGVGAQDI----------------------- 1453

[Close]

BLAST of HG10003230 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 1271.9 bits (3290), Expect = 0.0e+00
Identity = 712/1492 (47.72%), Postives = 936/1492 (62.73%), Query Frame = 0


Query: 4    MEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQCTTC 63
            MED+ + EL +P G +T I FS+S   D + ++V+ V+A N+V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 64   GASSLKSCEGLTRGVIHSTKDSPPHGDVFEVDSEVED--PTSDYHR----------PKGC 123
            G+   K CEG   GVI+          + EV + +    P   Y R          P+ C
Sbjct: 61   GSKDRKVCEG-HFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITEDQPERC 120

Query: 124  RYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPK 183
            RYC  +L   YP M+F+++T ++FR+S I+VEV E    K +KR     LP DYW+F+P+
Sbjct: 121  RYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYWSFLPQ 180

Query: 184  DEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTEM 243
            D   ++S  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +RVTE+
Sbjct: 181  DSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRVTEI 240

Query: 244  AHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS------- 303
             H F NG RLIF    ++  K                + +   +   +T +SS       
Sbjct: 241  VHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPY 300

Query: 304  ---------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLS 363
                      GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+SEHL+
Sbjct: 301  QKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLN 360

Query: 364  SWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPP 423
              N ++L TS    L++  E++VRR  RLV ++ V +L  GD I+R L DGD VL+NRPP
Sbjct: 361  QCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLMNRPP 420

Query: 424  SIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSL 483
            SIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ ELV+L
Sbjct: 421  SIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVAL 480

Query: 484  DRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVSLNLFQMQQLQMLTLHQLLSPAILKA- 543
            D+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL  PAI+KA 
Sbjct: 481  DKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKAS 540

Query: 544  PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELIS-SEGSYWLRDSGRNLFQALI 603
            P      WTG QLF  L PP FDY+ P + V + NGEL+S SEGS WLRD   N  + L+
Sbjct: 541  PSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLL 600

Query: 604  EHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEET 663
            +H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+EAE+ 
Sbjct: 601  KHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQV 660

Query: 664  CNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVFRDIQN 723
            CN +QLMV+S +D L  + ED +      + R  YE+QKSA L++ +V AFK  +RD+Q 
Sbjct: 661  CNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQA 720

Query: 724  LVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQK 783
            L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+AWN   
Sbjct: 721  LAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWNDPN 780

Query: 784  MPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTR 843
             P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++PGTL+R
Sbjct: 781  SPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSR 840

Query: 844  KLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGGHPVGS 903
            +L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G  +GS
Sbjct: 841  RLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITGEALGS 900

Query: 904  LAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYG 963
            L+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LSK+ +G
Sbjct: 901  LSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHG 960

Query: 964  FEYGALGVKNHLERVIFKDIVSNVMI-------TDCPLA--------------------- 1023
            FEYG+L +KNHLE++ F +IVS  MI       T  PL+                     
Sbjct: 961  FEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAE 1020

Query: 1024 ---DSLRED-------------------------------GDTVCLTVTIAENTKNSFLQ 1083
                SL E                                 D VC+TVT+ E +K+S L+
Sbjct: 1021 SVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLE 1080

Query: 1084 LDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNH--GELYLRVTMSGE-GN 1143
            LD I+ +LI FLL + ++G   I +V+I W DRPK PK   NH  GELYL+VTM G+ G 
Sbjct: 1081 LDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGK 1140

Query: 1144 SRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIR 1203
               W  L+  CLPIMD+IDW RSHPDN    C  YGID+G   F+ +LESA  D GK I 
Sbjct: 1141 RNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEIL 1200

Query: 1204 PKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGIKD 1263
             +HLLLVA+SLS TGEF+ LN KG S QR+      PF QACFS+P  CF+KAAK G++D
Sbjct: 1201 REHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRD 1260

Query: 1264 NLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESL 1323
            +L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N+  +  
Sbjct: 1261 DLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPK-- 1320

Query: 1324 DKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFTLRTILHK 1382
                 S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L+ ILH 
Sbjct: 1321 -----SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKRILHS 1380

[Close]

BLAST of HG10003230 vs. TAIR 10
Match: AT1G63020.2 (nuclear RNA polymerase D1A )

HSP 1 Score: 1271.9 bits (3290), Expect = 0.0e+00
Identity = 712/1492 (47.72%), Postives = 936/1492 (62.73%), Query Frame = 0


Query: 4    MEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASNEVSDPKLGLPNPSYQCTTC 63
            MED+ + EL +P G +T I FS+S   D + ++V+ V+A N+V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 64   GASSLKSCEGLTRGVIHSTKDSPPHGDVFEVDSEVED--PTSDYHR----------PKGC 123
            G+   K CEG   GVI+          + EV + +    P   Y R          P+ C
Sbjct: 61   GSKDRKVCEG-HFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQITEDQPERC 120

Query: 124  RYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPK 183
            RYC  +L   YP M+F+++T ++FR+S I+VEV E    K +KR     LP DYW+F+P+
Sbjct: 121  RYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYWSFLPQ 180

Query: 184  DEQQEDSYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTPNSHRVTEM 243
            D   ++S  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +RVTE+
Sbjct: 181  DSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRVTEI 240

Query: 244  AHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS------- 303
             H F NG RLIF    ++  K                + +   +   +T +SS       
Sbjct: 241  VHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPY 300

Query: 304  ---------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLS 363
                      GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+SEHL+
Sbjct: 301  QKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLN 360

Query: 364  SWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPP 423
              N ++L TS    L++  E++VRR  RLV ++ V +L  GD I+R L DGD VL+NRPP
Sbjct: 361  QCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLMNRPP 420

Query: 424  SIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSL 483
            SIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ ELV+L
Sbjct: 421  SIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVAL 480

Query: 484  DRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVSLNLFQMQQLQMLTLHQLLSPAILKA- 543
            D+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL  PAI+KA 
Sbjct: 481  DKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKAS 540

Query: 544  PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELIS-SEGSYWLRDSGRNLFQALI 603
            P      WTG QLF  L PP FDY+ P + V + NGEL+S SEGS WLRD   N  + L+
Sbjct: 541  PSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLL 600

Query: 604  EHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEET 663
            +H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+EAE+ 
Sbjct: 601  KHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQV 660

Query: 664  CNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAALNQASVDAFKKVFRDIQN 723
            CN +QLMV+S +D L  + ED +      + R  YE+QKSA L++ +V AFK  +RD+Q 
Sbjct: 661  CNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQA 720

Query: 724  LVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQK 783
            L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+AWN   
Sbjct: 721  LAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWNDPN 780

Query: 784  MPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTR 843
             P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++PGTL+R
Sbjct: 781  SPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSR 840

Query: 844  KLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDGENNNRDRDIGGHPVGS 903
            +L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G  +GS
Sbjct: 841  RLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITGEALGS 900

Query: 904  LAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYG 963
            L+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LSK+ +G
Sbjct: 901  LSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHG 960

Query: 964  FEYGALGVKNHLERVIFKDIVSNVMI-------TDCPLA--------------------- 1023
            FEYG+L +KNHLE++ F +IVS  MI       T  PL+                     
Sbjct: 961  FEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAE 1020

Query: 1024 ---DSLRED-------------------------------GDTVCLTVTIAENTKNSFLQ 1083
                SL E                                 D VC+TVT+ E +K+S L+
Sbjct: 1021 SVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLE 1080

Query: 1084 LDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNH--GELYLRVTMSGE-GN 1143
            LD I+ +LI FLL + ++G   I +V+I W DRPK PK   NH  GELYL+VTM G+ G 
Sbjct: 1081 LDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGK 1140

Query: 1144 SRFWATLMNNCLPIMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIR 1203
               W  L+  CLPIMD+IDW RSHPDN    C  YGID+G   F+ +LESA  D GK I 
Sbjct: 1141 RNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEIL 1200

Query: 1204 PKHLLLVANSLSATGEFIGLNVKGLSHQREHALVKTPFMQACFSTPGACFVKAAKAGIKD 1263
             +HLLLVA+SLS TGEF+ LN KG S QR+      PF QACFS+P  CF+KAAK G++D
Sbjct: 1201 REHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRD 1260

Query: 1264 NLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESL 1323
            +L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N+  +  
Sbjct: 1261 DLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPK-- 1320

Query: 1324 DKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFTLRTILHK 1382
                 S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L+ ILH 
Sbjct: 1321 -----SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKRILHS 1380

[Close]

BLAST of HG10003230 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 315.1 bits (806), Expect = 2.8e-85
Identity = 343/1356 (25.29%), Postives = 551/1356 (40.63%), Query Frame = 0


Query: 4    MEDEQDGELPIPSGLVTGINFSVSTQQD--TENIAVMTVDASNEVSDPKLGLPNPSYQCT 63
            ME+E   E  I  G + GI F++++  +   ++I+   ++  +++++  LGLP    +C 
Sbjct: 1    MEEESTSE--ILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCE 60

Query: 64   TCGASSLKSCEGLTRGVIHSTKDSPPHGDVFEVDSEVEDPTSDYHRPKGCRYCFGSLKDW 123
            +CGA+    CEG   G I           V E+   +        + K  +   G L D 
Sbjct: 61   SCGATEPDKCEG-HFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLAD- 120

Query: 124  YPPMRFKLSTTDMFRKSMIMVEVKENMSKKY--QKRVAKGGLPSDYWNFIPKDEQQEDS- 183
                  +L        S I ++ + +    Y   K  ++  L    WNF+ +   +  S 
Sbjct: 121  ------RLLGVCCEEASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSD 180

Query: 184  YCRPNRKILTHAQVHYLLKDIDPKFLKKFVP----ATDSLFLNSFPVTPNSHRVTEMAHS 243
            Y RP    L   +V  +L+ I  +  KK         +   L   PV PN   V E +  
Sbjct: 181  YTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDG 240

Query: 244  FSNGQRLIFLSPEKLQSKDLV--------------------------------------- 303
            FS     + + P +++ KD++                                       
Sbjct: 241  FST----MSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGT 300

Query: 304  ----------YQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIP 363
                      Y   KI D+++S      ++ + + K S    R V+ GD    ++E+GIP
Sbjct: 301  AKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIP 360

Query: 364  CHVAERLQISEHLSSWN----MKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGD 423
              +A+R+   E +S  N     K +     L   +    Y  R+G     +   EL  G 
Sbjct: 361  IEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGSTTYSLRDGS----KGHTELKPGQ 420

Query: 424  TIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHG 483
             ++R + DGDVV +NRPP+ H+HSL AL V  +   + + +NPL CSP   DFDGDC+H 
Sbjct: 421  VVHRRVMDGDVVFINRPPTTHKHSLQALRV-YVHEDNTVKINPLMCSPLSADFDGDCVHL 480

Query: 484  YVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQL 543
            + PQSL A+ EV EL S+++QL++  +G+ +L +  DSL +  +++E  V L+    QQL
Sbjct: 481  FYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKATAQQL 540

Query: 544  QMLTLHQLLSPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVFIKNGELISSEGS 603
             M     L  PA+ K+      AWT  Q+     P     S       +   +L+  +  
Sbjct: 541  AMYGSLSLPPPALRKSS-KSGPAWTVFQILQLAFPERL--SCKGDRFLVDGSDLLKFDFG 600

Query: 604  YWLRDSGRN--LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSH 663
                 S  N  +    +E    +TL +    Q +L E L   G S+SL DL     S S 
Sbjct: 601  VDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDL-----SMSR 660

Query: 664  KNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQKSAAL 723
             +M  D+   L   E +  + +L + S++D L  ++              S  K K  A 
Sbjct: 661  ADM--DVIHNLIIREISPMVSRLRL-SYRDELQLEN--------------SIHKVKEVAA 720

Query: 724  NQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTL 783
            N      F      I+NL+     K NS +T           KLVQ +  LGLQ S    
Sbjct: 721  N------FMLKSYSIRNLI---DIKSNSAIT-----------KLVQQTGFLGLQLSDKKK 780

Query: 784  SFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFAHSVTN 843
             ++       + +  +K  R I   G          + +V+  F  GL+P+E  AHS+  
Sbjct: 781  FYTKTLVEDMAIFCKRKYGR-ISSSG---------DFGIVKGCFFHGLDPYEEMAHSIAA 840

Query: 844  RD--SSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNE 903
            R+     S     PGTL + L  ++RDI    DGTVRN   N ++QF Y +         
Sbjct: 841  REVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGV--------- 900

Query: 904  LDGENNNRDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLN-----LKRVLEC- 963
             D E  ++     G PVG LAA AMS  AY A      +L++SP  N     +K VL C 
Sbjct: 901  -DSERGHQGLFEAGEPVGVLAATAMSNPAYKA------VLDSSPNSNSSWELMKEVLLCK 960

Query: 964  -GSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVIFKDIVSNVMI-------- 1023
               +  +  +   L+L+E    + +  E  A  V+N L +V  KD     ++        
Sbjct: 961  VNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTI 1020

Query: 1024 --------------------------------------------------TD-------- 1083
                                                              TD        
Sbjct: 1021 SEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLS 1080

Query: 1084 ----CPLADSLREDG-DTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDR 1143
                C   D     G D  CLT +      +    LD + + +   LL  VI+G + I  
Sbjct: 1081 VSECCSFRDPCGSKGSDMPCLTFSYNATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICS 1140

Query: 1144 VDIAWNDRPKVPKPRCNH----GELYLRVTMSGEG---NSRFWATLMNNCLPIMDLIDWS 1203
             +I WN        R  H    GE  L VT+       +   W  ++++CL ++ LID  
Sbjct: 1141 ANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTK 1200

Query: 1204 RSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRPKHLLLVANSLSATGEFIGLN 1207
            RS P +   +    G+   ++  +  L ++   + K +  +H++L+AN+++ +G  +G N
Sbjct: 1201 RSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFN 1259

[Close]

BLAST of HG10003230 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 162/610 (26.56%), Postives = 282/610 (46.23%), Query Frame = 0


Query: 274 IKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLH 333
           I+  ++GKR D   R V+  DP I + E+G+P  +A  L   E ++ +N+++L       
Sbjct: 347 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLK-----E 406

Query: 334 LVEKG----------EIYVRREGRLVRVRNVLE-----LNMGDTIYRPLADGDVVLVNRP 393
           LV+ G          +  +R +G+ + +R + +     L +G  + R L DGD VL NR 
Sbjct: 407 LVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQ 466

Query: 394 PSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVS 453
           PS+H+ S++   ++++P S+   LN    SP+  DFDGD ++ +VPQS E R EV EL+ 
Sbjct: 467 PSLHKMSIMGHRIRIMPYST-FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMM 526

Query: 454 LDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLTL-------HQLLS 513
           + + +++ Q+ R ++ +  D+L     I       + F  + + M TL        ++ +
Sbjct: 527 VPKCIVSPQANRPVMGIVQDTLLGCRKI----TKRDTFIEKDVFMNTLMWWEDFDGKVPA 586

Query: 514 PAILKAPLLRNCAWTGKQLFSTLLPPDFD--------------YSSPSHC-VFIKNGELI 573
           PAILK   L    WTGKQ+F+ ++P   +              + +P    V I+ GEL+
Sbjct: 587 PAILKPRPL----WTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELL 646

Query: 574 SSE-GSYWLRDSGRNLFQALIEHC-EGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSV 633
           +       L  S  +L   + E         +L   Q ++  WL   G ++ +       
Sbjct: 647 AGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIG------ 706

Query: 634 DSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGDDEDNQHVLSIAVERLSYEKQ 693
           D+ +  + M+ I       E   N K  + D  +    G + D +   ++   R ++E +
Sbjct: 707 DTIADSSTMEKI------NETISNAKTAVKDLIRQ-FQGKELDPEPGRTM---RDTFENR 766

Query: 694 KSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQH 753
            +  LN+A  DA     + +         + N+L  M  AGSKG+ + + Q + C+G Q 
Sbjct: 767 VNQVLNKARDDAGSSAQKSL--------AETNNLKAMVTAGSKGSFINISQMTACVGQQ- 826

Query: 754 SLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIPYAVVESSFLSGLNPFECFA 813
                  ++  K     ++ + +P + + D  P+          VE+S+L GL P E F 
Sbjct: 827 -------NVEGKRIPFGFDGRTLPHFTKDDYGPESR------GFVENSYLRGLTPQEFFF 886

Query: 814 HSVTNRDSSFSDNAEV--PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPT 840
           H++  R+       +    G + R+L   M DI   YDGTVRN+ G+ ++QF Y  D   
Sbjct: 887 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 903

[Close]

BLAST of HG10003230 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-34
Identity = 171/609 (28.08%), Postives = 266/609 (43.68%), Query Frame = 0


Query: 280 GKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEK-- 339
           GKR +   R V+  DPN++++E+GIP  +A+ L   E +S  N++KL   C  +   K  
Sbjct: 359 GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL-RQCVRNGPNKYP 418

Query: 340 GEIYVR----REGRLV---RVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALS 399
           G   VR        LV   R R   EL +G  + R L +GDVVL NR PS+H+ S++   
Sbjct: 419 GARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHR 478

Query: 400 VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGR 459
            +++P  + L  N   C+P+  DFDGD ++ +VPQ+ EAR E   L+ +   L   ++G 
Sbjct: 479 ARIMPWRT-LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 538

Query: 460 NLLSLSHDSLTAAHLIME-----DGVSLNLFQMQQLQMLTLHQLLSPAILKAPLLRNCAW 519
            L++ + D LT++ LI       D  + +L        +    L +P ILK   L    W
Sbjct: 539 ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIEL----W 598

Query: 520 TGKQLFSTLLPP-------------DFDYSSPSH-----------CVFIKNGELISSE-G 579
           TGKQ+FS LL P             + ++    H            V+ +N ELIS + G
Sbjct: 599 TGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLG 658

Query: 580 SYWLRDSGRN-LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSH 639
              L +  ++ L+  L+        DY   A  V    L+       LS  ++ +  +S 
Sbjct: 659 KATLGNGNKDGLYSILLR-------DYNSHAAAVCMNRLA------KLSARWIGIHGFSI 718

Query: 640 KNMMDDIFCGLQEAEETCNLKQLMVDS-HKDILTGDDEDNQHVLSIAVERLSYEKQKSAA 699
              +DD+  G + ++E  +  Q   D  H+ I    +E N+  L           Q  A 
Sbjct: 719 G--IDDVQPGEELSKERKDSIQFGYDQCHRKI----EEFNRGNL-----------QLKAG 778

Query: 700 LNQASVDAFKKVFRDIQNLVYKYSGK--------DNSLLTMFKAGSKGNLLKLVQHSMCL 759
           L+ A   + +     I N + + +GK         NS L M + GSKG+ + + Q   C+
Sbjct: 779 LDGAK--SLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACV 838

Query: 760 GLQHSLVTLSFSLPHKLTCSAWNSQKMPRYIQKDGLPDRTPSFIP--------YAVVESS 819
           G Q                   N  + P     DG  DR+    P           V +S
Sbjct: 839 GQQ-----------------TVNGHRAP-----DGFIDRSLPHFPRMSKSPAAKGFVANS 898

Query: 820 FLSGLNPFECFAHSVTNRDSSFSDNAEVPGT--LTRKLTFLMRDIYTAYDGTVRNAYGNQ 830
           F SGL   E F H++  R+       +   T  ++R+L   + D+   YD TVRNA G  
Sbjct: 899 FYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASG-C 906

The following BLAST results are available for this feature:

BLAST of HG10003230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905038.1	0.0e+00	86.36	DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_0389...	[more]
XP_038905042.1	0.0e+00	86.36	DNA-directed RNA polymerase IV subunit 1 isoform X2 [Benincasa hispida]	[more]
TYK19428.1	0.0e+00	83.91	DNA-directed RNA polymerase IV subunit 1 [Cucumis melo var. makuwa]	[more]
XP_011650447.1	0.0e+00	84.89	DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >XP_011650...	[more]
XP_038905043.1	0.0e+00	86.20	DNA-directed RNA polymerase IV subunit 1 isoform X3 [Benincasa hispida] >XP_0389...	[more]

BLAST of HG10003230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQ02	0.0e+00	47.72	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
Q5D869	4.0e-84	25.29	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
P17546	2.3e-47	27.27	DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei brucei OX=57...	[more]
P17545	5.1e-47	27.10	DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei brucei OX=57...	[more]
P35084	1.5e-46	26.70	DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689...	[more]

BLAST of HG10003230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D780	0.0e+00	83.91	DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0L2L4	0.0e+00	84.89	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_3G039340 PE=4 SV=1	[more]
A0A1S4DY39	0.0e+00	84.06	DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103490982 PE=4 SV=1	[more]
A0A6J1FKU9	0.0e+00	81.03	DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444908 PE=4 S...	[more]
A0A6J1KSL8	0.0e+00	80.90	DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111498320 PE=4 SV=...	[more]

BLAST of HG10003230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63020.1	0.0e+00	47.72	nuclear RNA polymerase D1A	[more]
AT1G63020.2	0.0e+00	47.72	nuclear RNA polymerase D1A	[more]
AT2G40030.1	2.8e-85	25.29	nuclear RNA polymerase D1B	[more]
AT4G35800.1	1.3e-42	26.56	RNA polymerase II large subunit	[more]
AT5G60040.1	1.0e-34	28.08	nuclear RNA polymerase C1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 212..467 e-value: 5.0E-26 score: 102.5
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 280..438 e-value: 6.9E-34 score: 117.5
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 447..595 e-value: 2.1E-20 score: 75.0
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 657..717 e-value: 1.0E-10 score: 41.5
None	No IPR available	PFAM	PF11523	DUF3223	coord: 1265..1360 e-value: 4.5E-19 score: 68.9
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 313..365 e-value: 7.9E-42 score: 145.2
None	No IPR available	GENE3D	2.40.40.20		coord: 275..446 e-value: 7.9E-42 score: 145.2
None	No IPR available	GENE3D	3.10.450.40		coord: 1248..1362 e-value: 1.9E-18 score: 68.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..103
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 944..1251
None	No IPR available	PANTHER	PTHR19376:SF36	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1	coord: 4..942
None	No IPR available	PANTHER	PTHR19376:SF36	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1	coord: 944..1251
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 4..942
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 16..1177
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 616..767 e-value: 4.6E-11 score: 44.9
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 443..590 e-value: 4.0E-14 score: 52.8
IPR040403	DNA-directed RNA polymerase IV/V subunit 1, N-terminal	CDD	cd10506	RNAP_IV_RPD1_N	coord: 27..814 e-value: 0.0 score: 1163.71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003230.1	HG10003230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding