HG10003216 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003216
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	replication factor C subunit 2
Location	Chr11: 18865922 .. 18871817 (-)
RNA-Seq Expression	HG10003216
Synteny	HG10003216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCTTCAGGCGGCAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCACCAAGGTCGTTGACATTGTGGGCAATGAAGATGCAGTTTCTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGTACTCTTCTCATCTCTAATCCCTTCCGAAATTTTCCTTCTTTAGTTTGCATTGCATCCATTGATGATATAGTTTAGTTATGGTACATGGGTTTAAGTTAATTTCTAATCTAACTTTTAGTTTGTTTACGATATGGTACTGAAAATGAACTTATATATTTAGTTATGTGAATTAGAAAATCATGCAGCTTGAACGTTTTTTTTTTCTTTCTCTTCTTTGAACTTTTTAATGGCCTCTGGGGAACTTGGGAACTAGTAAGGCTCGAATTTTATCCTATTTTTGATAATTCTTTTGGGGGGTTTCTTTAATGTTCTGCAGTCAAGTATGCAAATTTTTTCTACCACAGTGGGTTGAGGGAAAGTGAAGAGTAAAAGGTTCTATAAGTGCTAGTTTACGTCGTACATGGGTATTTTAATGTACTACATCTTGAATGTTGTTGCTATGATGAGGTTTTTGATGAACAAATGTTGTAACTTTTTCCTACTGTCTTGCTATCAGTTCTAATATACGTTGTTGCTATGTATTTGTTTTCTAGGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGTGAGATATTATATGCTTTCTAAACTTCAAATATTTCAAATGTTACTGGATCTGTGTGTTTTTCTAATCTGCGTTCTTGTTTAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGGTAGGTTTCAATGGATATAATGCTAGGGAAGCACAGACGATATCTTTTTGATAGAGTGTCCATGTCATACACGTGTCTAGCACGCTAAAAAAGTATCCTATTTTATATATTCTTTTCTTTTCAATTTCGAACACTCATGGGACACATAAACCTAAAAATTCAAACACAACTGGAGCACAACAAGCTTTGAGACATACACTGGAAATTTTTGTTTTCTATTGCTTTGCTCTTCAGTTTCTTACTTTAGGTTCCATTGTTTATTTATTACTTTTGGTGATGGTTATGATTGTGGAAATAATCCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTATCGATTATTTTTTATAATGCTTTGAGCTGCATTCCAGATCCAGACTACATTTCTGTTGTTACAAATAAAATCACTCTGCTAATTTTAATTGCTGTTATTGAAAACTTCATACTGCTTAATTATCTTCTGAAGAAAGTATTACTTCATTGAAAGGCTGAAAGCAGCAGTACGTTAGATTTCATGTCATTGATTTATTATGTATTGTTCTCGTTGTTCTTTTGTGGAATTTTTTTTTTATGGGAATGGCTAGCTTGTTTAGTAATCACTGGTCATATTCTTAAGCTTTATTGTTCAAAAGGATAAAGAGCCTTGTTCTTCTCAAAATTTCTTTTATTAGGACTAAATTTCTCATAGATATGTTTCTTAGAGTTGCACGTAAACAAAAGTATTATGTTAATATCGCCAATTGGTCAGGTAAAGATCTTGCGGAAGGGAAGGCCCGCAAAGTGCCTCTAAAAGTAAACTATTTTTTTGGTCTTATTGGGCCTCCTTTTTGTAACTCTTTGGTCTTCTGGGGATTTCTTAGCTCCCCTCTTTTGTTTCAATTATGATCAATTACATGGTCTCCAAAAAAAAAACTATTTTTATTTATTTATTATTTTTTTTAACACAAGACAAAACTTTTCATTGATGAAATGAGAAGAGAAACTAATACCCAATAAATACAAAACTCCATGGAGGAGAGAAAAAAGTAAATAAGGGACCATTCAACAATCAACACATAAGTAGAATAACTCCAAAAAACAAAAAATTCATAGATATAAAGAGAACAAAAGTTGAACTAATAAGGAAAAGGGAAGGTTGGCCAATTGAGACGAATGTCTTGAGAAGAGTATCCAGCAAAGGTTGTAGTAAGAGAGCACCATAGAGAGGCGCTGAGACGAGCTAAGGCACAAATATTTGAACTGGAACAACACTTCTCTTAAAAAATTCGTAGGTTCCTTTTCATCCATAAACCTGATAGCAAAGCCTTTACGACATTAATCCAAACAAGGTGTGGCCTCACTGAAAGAGGACCCTCAAGTAGCTGAAGTGCATTGTTTTTGATACTGGAGTAAAAAACCCATGAAAATCTGAAGAAATTAAGAAGCTTGCTCCAACAATTGTAAGAGAAAGGACAGGTAGCAAACACATGGTTGTAGCTTTCCACATTCAATGACAAAGGAAACAAATTGAGGGTTGAAGGCATGATGTAGCTAATTTCTTCTAAAGAATATTTGCTGTGTTGAGGCTACCGTTCAAAAGAATCCAAGATAAAATGGAAACCCTCAAAGGACTATTAGATTGCCATAATGCCACGTAGATCTCTTTTGACAAAGGAGAATAGGATTTTAATTTTCAAGAGAGGGATTTAATTATGAATGAACCTGATGCTTCCAAAGTCCAAATTTTGGAATCCGCTCCAACACTAACCGTAACGATGGAGAGAGCTTCCATGACAGCAAAATCTGAAATTTCATCATCTTTTAAAAGTCTCCTAGAGACTATTTGCCAAGCTAAACAAGTAGCATCCCAAAAATCACTAACAACCTTATTCAACAAAGGGGAGAACTGAAAAAGTTGAGGAAATTTATCTCTTAAAACCTCTGAACCAACCCAAAGATGATACCAAAATAGGATTCTTGAACCAGATCTTAAGGAGAATGGAGCAAACAAATCCCCGAATTTTCAAGTTCGAGATATATTAATCCATGGGCATCAAAGACTGGATTGGTGTTTTCCAAGTGTATGCCAATCAAATGTATCAGTGCCATGAATACTAGAAATCACCAATTTCCAACTAGAGAGAAGTTCCATAAAATAACGCCAACCCCATTTTGCAAGCATAGCTGAGTTTTGAATGGATAAACCACCAATACCCAAACCTCCATCTAGCTGTGAATTCATAACTATTTTCCAATGCACAAGATGAATAATCTTACCTCCATTGTTTCCTTCCCAAAAGAAGTTACGTAAGATGCGTTTCAATTCCAATCCAACACCTGAAGGCATTCGAAAGATAGACATGTAGTCAGTGAGGAGATAAGACAACACCGATTTGCAAAGTGTGAGCCGTCCACCCCTTGAAAGGTGGAATCTCTTCTAACGGTGAAGCTTTTTGTAAACTTTATAAAAAATGGGCTGCGGAAAAGATGCATTCTTCAGGGGACCACCCAAGGGTAATCCGAGATAAACGAAAGGTAGATCTTCCAGCTTGCAATTAAATTTTGATGCCATGGCTGAAAGTTTGGAGTCATCAACATTGATACCACAAAGGGAGGATTTCTGCCAATTAACTTTTAATCCTGAAATTCTTTCAAAAACTTTCACAGTCTTCATGAGAATTTCCAACATTGAATCATTATATTTACAAAAAAGTAAAATGTCATCAGCGAATTGAAGTATTGACACATGTACCTTGGCTGTCCCAACCGTGAATCCTTCAAACAATCCTTTAGAATGAATGTTTGCCACTAAAACAGTAAGAATTTCACTGATCAAGAGAAAAAGAAAGGGAGAGAGGTCACCTTGACGGATACCTCTTGAAGCCACAATTCTTCCTCTTGGTCACCCATTTATGAAGATAGCGAATTTAGGATTGCGAATGCATCCATTTATCCATTTGATCCAAAGAGGATCAAACCCCTTTGCCTTCAAAATTTGCTCCAAAAAATCCCAATCAATCGAATCAAAGGCTTTCTCGATGTCTAGTTTGAGGATCCAGCATTGTCTTCTTTAAAATTTATAGCCTTCCACAATTTCGTTTGCAATCAAAATGGGATCCAGTATTTGTCTTCCTTCAATAAAAGCACTTTGTGAAGAAAAACTATTCTTTGGTTCATATGGATTGAAAAGAACAATATGTTACTCAAAGATAGTGTAAGAGTACCGATATAATTAGAGATACCAACTTTTTGGTTGATTGGTAATTTAACATAATATCAGAGCAAATGGTCTTGCATTCGAACCCTTTAATGTTATTTCCTGTCCCAATTAATATTGATTTTCAAGGCCCTTTAAAAAATTTTAAGTCCACAAGTGAGGGAGCATCAAAGTATTGATATAATTACAGTAGAGAGAGAGAGATTTTGGGTTGTTTGGGTCACTACTGTAAACCTCCATCGAAGAGGTAAATGGCATTATGATCCTCTTTCATGCATGCATCTTACAACTTTTCTTATCCTATGGATATAGTAAACTAACAAATCTTCAGTGCTTTTTAATAATGAAAAGCAAAAAGTTTGCTCTTCGGAGGGAAGAGTTGGCCTCACCGATCTTTTATGGAATGCGAGGGGCCTCAATTCTATGGCCAGAAGAATCAATGCTAAAGATACTTTTCTCATATTTCTGACTTTTTCATTCTCACTAAAATAAGACAAGGCCCATTAGTAGGAGGCTTATCAAGGTGTTAAATGGACTTCTTAAGATGATGTAGGTTCCTTTTGGTAGCATAGCATTCTTTTTTCTTTGGAAGGACTTACCCATATAGATAAAAGGTATGCTCTTTCTCTATTTTAGTGGTTATCTTAGGCTAATGAAGTTTGTTGGTGGATCTTAGGCATCTGTCTTTGGCTAGCTAACAAAGAGGAGACACAAGTTTTGAAGGGAATTATATGACTTTCAACTTATAGCACTTGGCAAAAGCCGGTTTCTTTTACAACAAAACTAATGTGTCTTTTAGCACTTCATTGAGTTGATTAAAGAATGATCGTGGGTGAATAGCTCTCTGACTGTATTTTTACTACTTGGGTTGATAAGTTCTCCCTTTCTTTTATTCCGAATACAAAAGGAACATGTTCAGGTTGTTTAGAAATGATTATTGTTGAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCCCATCACTTGTTTTTATCTTTCTTTATCTTTTATAAACTCAGAAAACTTCATCTTGACATGCTTGTTGATTCTCCAGGTTTGCGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGGTCTGAAGCAACTGTACGACTTAGGCTATTCTCCCACTGACATAATTACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATGTTAAAACCTGAGTCATCATTTGATCATACCAGATTAAGCAAGTACTCACTCTTTTGATGAATTGCAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGATGTGCGGCCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCCCCATGA

mRNA sequence

ATGGCGTCTTCTTCAGGCGGCAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCACCAAGGTCGTTGACATTGTGGGCAATGAAGATGCAGTTTCTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGGTCTGAAGCAACTGTACGACTTAGGCTATTCTCCCACTGACATAATTACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGATGTGCGGCCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCCCCATGA

Coding sequence (CDS)

ATGGCGTCTTCTTCAGGCGGCAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCACCAAGGTCGTTGACATTGTGGGCAATGAAGATGCAGTTTCTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGGTCTGAAGCAACTGTACGACTTAGGCTATTCTCCCACTGACATAATTACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGATGTGCGGCCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCCCCATGA

Protein sequence

MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP

Homology

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BLAST of HG10003216 vs. NCBI nr
Match: XP_022152824.1 (replication factor C subunit 2 [Momordica charantia])

HSP 1 Score: 649.8 bits (1675), Expect = 1.3e-182
Identity = 326/333 (97.90%), Postives = 330/333 (99.10%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS G +SSSYDMPWVEK+RPTKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSG-NSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLSMVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of HG10003216 vs. NCBI nr
Match: XP_038905731.1 (replication factor C subunit 2 [Benincasa hispida])

HSP 1 Score: 648.7 bits (1672), Expect = 2.8e-182
Identity = 326/333 (97.90%), Postives = 330/333 (99.10%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG  SSSSYDMPWVEKYRP+ VVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSG--SSSSYDMPWVEKYRPSTVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILD
Sbjct: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKMVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLSMVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of HG10003216 vs. NCBI nr
Match: XP_008448956.1 (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 646.7 bits (1667), Expect = 1.1e-181
Identity = 324/333 (97.30%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG  SSS+YD+PWVEKYRP KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSG--SSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLSMVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of HG10003216 vs. NCBI nr
Match: XP_023551831.1 (replication factor C subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 643.7 bits (1659), Expect = 9.0e-181
Identity = 319/333 (95.80%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG SSSSSYDMPWVEKYRP+KV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTG
Sbjct: 1   MASSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLEGKFDDACA LKQLYD+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLS+ RETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIARETAKAP 333

[Close]

BLAST of HG10003216 vs. NCBI nr
Match: XP_022965099.1 (replication factor C subunit 2 [Cucurbita maxima])

HSP 1 Score: 642.9 bits (1657), Expect = 1.5e-180
Identity = 319/333 (95.80%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG SSSSSYDMPWVEKYRP+KV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTG
Sbjct: 1   MASSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLEGKFDDACA LKQLYD+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKE G
Sbjct: 241 HVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKEIG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of HG10003216 vs. ExPASy Swiss-Prot
Match: Q9CAM7 (Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1)

HSP 1 Score: 612.8 bits (1579), Expect = 2.2e-174
Identity = 304/333 (91.29%), Postives = 320/333 (96.10%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS  S+   Y+ PWVEKYRP+KVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of HG10003216 vs. ExPASy Swiss-Prot
Match: Q7XRX1 (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 PE=2 SV=2)

HSP 1 Score: 587.4 bits (1513), Expect = 1.0e-166
Identity = 286/331 (86.40%), Postives = 314/331 (94.86%), Query Frame = 0


Query: 2   ASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 61
           +SSS    + +YD+PWVEKYRPT+V D+ GN DAV+RLQ IARDGNMPNLILSGPPGTGK
Sbjct: 4   SSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGK 63

Query: 62  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 121
           TTSIL+LAHELLGP+Y+E VLELNASDDRG+DVVRNKIKMFAQKKVTL PGRHK+VILDE
Sbjct: 64  TTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDE 123

Query: 122 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 181
           ADSMT+GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL+DQEILGRL
Sbjct: 124 ADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRL 183

Query: 182 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLH 241
           M+V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPLH
Sbjct: 184 MIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLH 243

Query: 242 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 301
           VKN+V+NVL+GKFD+AC+ LKQLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETGF
Sbjct: 244 VKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGF 303

Query: 302 AHMRICDGVGSYLQMCGLLAKLSMVRETAKA 333
           AHMRICDGVGS+LQ+ GLLAK ++VRETAKA
Sbjct: 304 AHMRICDGVGSFLQLSGLLAKFALVRETAKA 334

[Close]

BLAST of HG10003216 vs. ExPASy Swiss-Prot
Match: P35250 (Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3)

HSP 1 Score: 456.4 bits (1173), Expect = 2.7e-127
Identity = 220/322 (68.32%), Postives = 266/322 (82.61%), Query Frame = 0


Query: 2   ASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 61
           A S    S+  Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGK
Sbjct: 23  AFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGK 82

Query: 62  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 121
           TTSIL LA  LLGP  K+ +LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDE
Sbjct: 83  TTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDE 142

Query: 122 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 181
           ADSMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RL
Sbjct: 143 ADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRL 202

Query: 182 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLH 241
           M V++ E+VPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF F+N +NVFKVCD+PHPL 
Sbjct: 203 MNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 262

Query: 242 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 301
           VK ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+
Sbjct: 263 VKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 322

Query: 302 AHMRICDGVGSYLQMCGLLAKL 324
            HM+I +GV S LQM GLLA+L
Sbjct: 323 THMKIAEGVNSLLQMAGLLARL 344

[Close]

BLAST of HG10003216 vs. ExPASy Swiss-Prot
Match: Q641W4 (Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.7e-127
Identity = 215/315 (68.25%), Postives = 265/315 (84.13%), Query Frame = 0


Query: 9   SSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILAL 68
           ++  Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTTSIL L
Sbjct: 25  TTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 69  AHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTG 128
           A  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT G
Sbjct: 85  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 129 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAE 188
           AQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L RLM V++ E
Sbjct: 145 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKE 204

Query: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 248
           KVPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N +NVFKVCD+PHPL VK ++++
Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQH 264

Query: 249 VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 308
            ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++ +
Sbjct: 265 CVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAE 324

Query: 309 GVGSYLQMCGLLAKL 324
           GV S LQM GLLA+L
Sbjct: 325 GVNSLLQMAGLLARL 339

[Close]

BLAST of HG10003216 vs. ExPASy Swiss-Prot
Match: Q9WUK4 (Replication factor C subunit 2 OS=Mus musculus OX=10090 GN=Rfc2 PE=1 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 6.0e-127
Identity = 215/315 (68.25%), Postives = 265/315 (84.13%), Query Frame = 0


Query: 9   SSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILAL 68
           ++  Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTTSIL L
Sbjct: 25  TAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 84

Query: 69  AHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTG 128
           A  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT G
Sbjct: 85  ARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144

Query: 129 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAE 188
           AQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L RLM V++ E
Sbjct: 145 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKE 204

Query: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 248
           KVPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N +NVFKVCD+PHPL VK ++++
Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQH 264

Query: 249 VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 308
            ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++ +
Sbjct: 265 CVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAE 324

Query: 309 GVGSYLQMCGLLAKL 324
           GV S LQM GLLA+L
Sbjct: 325 GVNSLLQMAGLLARL 339

[Close]

BLAST of HG10003216 vs. ExPASy TrEMBL
Match: A0A6J1DH57 (replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE=3 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 6.1e-183
Identity = 326/333 (97.90%), Postives = 330/333 (99.10%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS G +SSSYDMPWVEK+RPTKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSG-NSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLSMVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of HG10003216 vs. ExPASy TrEMBL
Match: A0A1S3BLV0 (replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490969 PE=3 SV=1)

HSP 1 Score: 646.7 bits (1667), Expect = 5.2e-182
Identity = 324/333 (97.30%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG  SSS+YD+PWVEKYRP KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSG--SSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLSMVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of HG10003216 vs. ExPASy TrEMBL
Match: A0A6J1HQ24 (replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 7.4e-181
Identity = 319/333 (95.80%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG SSSSSYDMPWVEKYRP+KV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTG
Sbjct: 1   MASSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLEGKFDDACA LKQLYD+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKE G
Sbjct: 241 HVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKEIG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of HG10003216 vs. ExPASy TrEMBL
Match: A0A0A0L763 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV=1)

HSP 1 Score: 642.5 bits (1656), Expect = 9.7e-181
Identity = 322/333 (96.70%), Postives = 327/333 (98.20%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG  SSS+YD+PWVEKYRP KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSG--SSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLSMVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of HG10003216 vs. ExPASy TrEMBL
Match: A0A6J1E9R2 (replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=3 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.4e-179
Identity = 316/331 (95.47%), Postives = 327/331 (98.79%), Query Frame = 0


Query: 3   SSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 62
           +SS GSSSSSYDMPWVEKYRP+KV DIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGKT
Sbjct: 2   ASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKT 61

Query: 63  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 122
           TSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 62  TSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121

Query: 123 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 182
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181

Query: 183 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 242
           VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 241

Query: 243 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 302
           KN+VRNVLEGKFDDACA LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 242 KNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301

Query: 303 HMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           HMRICDGVGSYLQ+CGLLAKLS+VRETAKAP
Sbjct: 302 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332

[Close]

BLAST of HG10003216 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 612.8 bits (1579), Expect = 1.6e-175
Identity = 304/333 (91.29%), Postives = 320/333 (96.10%), Query Frame = 0


Query: 1   MASSSGGSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60
           MASSS  S+   Y+ PWVEKYRP+KVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGR
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQMCGLLAKLSMVRETAKAP 334
           FAHMRICDGVGSYLQ+CGLLAKLS+VRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of HG10003216 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 209.1 bits (531), Expect = 5.3e-54
Identity = 126/312 (40.38%), Postives = 170/312 (54.49%), Query Frame = 0


Query: 16  PWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 76  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 135
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 136 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQA 195
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 196 EKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVR 255
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 256 NVLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 315
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 316 RICDGVGSYLQM 317
           R+ DG   YLQ+
Sbjct: 310 RLVDGADEYLQL 321

[Close]

BLAST of HG10003216 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 204.5 bits (519), Expect = 1.3e-52
Identity = 117/331 (35.35%), Postives = 186/331 (56.19%), Query Frame = 0


Query: 7   GSSSSSYDMPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSIL 66
           G    S   PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++IL
Sbjct: 31  GPPPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTIL 90

Query: 67  ALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGRHKVVILDEADSM 126
           A+A +L GP Y+  +LELNASDDRGIDVVR +I+ FA  +  +L     K+V+LDEAD+M
Sbjct: 91  AVARKLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAM 150

Query: 127 TTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVL 186
           T  AQ ALRR +E Y+ +TRFAL  N  +KII  +QSRC   RF+ L    +  RL  V+
Sbjct: 151 TKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVI 210

Query: 187 QAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSG--------FRFVNQDNVFKVCDQP 246
           +AE++     GL A++  ++GDMR+ALN LQ+T            + + +++V+     P
Sbjct: 211 EAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNP 270

Query: 247 HPLHVKNVVRNVLEGKFDDACAGLKQLYD-LGYSPTDIITTLFRIIKNYDMAEYLKLEFM 306
            P  ++ +   +L   FD+    + ++    G +  DI+  +   I    M   ++++ +
Sbjct: 271 LPKDIEQISHWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLI 330

Query: 307 KETGFAHMRICDGVGSYLQMCGLLAKLSMVR 328
            +      R+  G    LQ+  +++  +  R
Sbjct: 331 NDLADIEYRLSFGCNDKLQLGAIISTFTHAR 361

[Close]

BLAST of HG10003216 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 200.3 bits (508), Expect = 2.5e-51
Identity = 123/311 (39.55%), Postives = 167/311 (53.70%), Query Frame = 0


Query: 16  PWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L   
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF-- 69

Query: 76  NYKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTTG 135
               GVLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT  
Sbjct: 70  ----GVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 136 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAE 195
           AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 196 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 255
            +    E L  +   + GD+R+A+  LQ+    F                PL V N +  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 256 VLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHMR 315
             + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       R
Sbjct: 250 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKR 309

Query: 316 ICDGVGSYLQM 317
           + DG   YLQ+
Sbjct: 310 LVDGADEYLQL 314

[Close]

BLAST of HG10003216 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 199.9 bits (507), Expect = 3.2e-51
Identity = 124/312 (39.74%), Postives = 166/312 (53.21%), Query Frame = 0


Query: 16  PWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
           PWVEKYRP +V D+   E+              P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 76  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 135
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 136 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQA 195
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 196 EKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVR 255
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 256 NVLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 315
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 316 RICDGVGSYLQM 317
           R+ DG   YLQ+
Sbjct: 310 RLVDGADEYLQL 309

The following BLAST results are available for this feature:

BLAST of HG10003216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152824.1	1.3e-182	97.90	replication factor C subunit 2 [Momordica charantia]	[more]
XP_038905731.1	2.8e-182	97.90	replication factor C subunit 2 [Benincasa hispida]	[more]
XP_008448956.1	1.1e-181	97.30	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo]	[more]
XP_023551831.1	9.0e-181	95.80	replication factor C subunit 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022965099.1	1.5e-180	95.80	replication factor C subunit 2 [Cucurbita maxima]	[more]

BLAST of HG10003216 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAM7	2.2e-174	91.29	Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1	[more]
Q7XRX1	1.0e-166	86.40	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 ...	[more]
P35250	2.7e-127	68.32	Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3	[more]
Q641W4	2.7e-127	68.25	Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1	[more]
Q9WUK4	6.0e-127	68.25	Replication factor C subunit 2 OS=Mus musculus OX=10090 GN=Rfc2 PE=1 SV=1	[more]

BLAST of HG10003216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DH57	6.1e-183	97.90	replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE...	[more]
A0A1S3BLV0	5.2e-182	97.30	replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349096...	[more]
A0A6J1HQ24	7.4e-181	95.80	replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 ...	[more]
A0A0A0L763	9.7e-181	96.70	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV...	[more]
A0A6J1E9R2	1.4e-179	95.47	replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=...	[more]

BLAST of HG10003216 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63160.1	1.6e-175	91.29	replication factor C 2	[more]
AT1G21690.1	5.3e-54	40.38	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	1.3e-52	35.35	replication factor C subunit 3	[more]
AT1G21690.4	2.5e-51	39.55	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	3.2e-51	39.74	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 47..179 e-value: 5.6E-13 score: 59.1
None	No IPR available	GENE3D	1.10.8.60		coord: 173..236 e-value: 3.7E-20 score: 73.2
None	No IPR available	GENE3D	1.20.272.10		coord: 237..329 e-value: 6.8E-30 score: 104.9
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 9..331
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 9..331
None	No IPR available	CDD	cd00009	AAA	coord: 30..167 e-value: 4.23162E-26 score: 99.5279
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 172..234 e-value: 3.20006E-19 score: 78.3397
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 237..322 e-value: 3.7E-20 score: 72.1
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 51..169 e-value: 9.8E-15 score: 55.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..172 e-value: 4.6E-57 score: 194.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 13..235
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 236..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003216.1	HG10003216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity