HG10003182 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTCGCAACTGCTTCCACCTTCCGCTACAGTATCCGAAGCAATGACGGCGCCGACCAATCTCTCCAAATCAGATTAGGATTTTTGTGGCGTGTACTCTCCCGATCACCGTCTGCCGGTCTTCCGTACGAAACCCTCTACGAAATTCCTTTAAGTTCAATGCGGGAGACTACATTCTCTCTCTATCTGCGAGAGCTCGAAGATCCGCTGCTCTGCGAAGCTTACATCGCTCAATTGCTGTCCTCTTTGGATCTCGGTGCCGTAACCTGTGAAATAATTTCTCGGAAGATCACATCCGTCGTCATTGAAGTATTGGAATCCGGAAACTACGATACGAAGTTCCAGATCGCAGTGGAAATCGATCTCGTCCAGATGTTCTGGGCAGAGGAGGAGCAGAGTTCGGTTCCGGTGGAGAATGGTGAAAGGTGCGGTGTTGTGGTGGAGGAGAGGGTGGTTCTGGAGGAAGCTCCGGCGAGGAGAAGGCGGGCGGAGAGGGAGAGTAAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGAGAGAGGAGAGTTTGGAGATTGTTGTGTTTGTCACGAAGAATTGAATGATGTGAGGAAGGAGGTGAGTACAATCCAGTGTGGTCATGTCTATCATAAATCATGTATTCTCACTTGGGTTCAAAGGAGCAACTCTTGTCCCTTGTGTAGAAGGGAAATTAAATTTGAAATTTAA ATGTCTTTCGCAACTGCTTCCACCTTCCGCTACAGTATCCGAAGCAATGACGGCGCCGACCAATCTCTCCAAATCAGATTAGGATTTTTGTGGCGTGTACTCTCCCGATCACCGTCTGCCGGTCTTCCGTACGAAACCCTCTACGAAATTCCTTTAAGTTCAATGCGGGAGACTACATTCTCTCTCTATCTGCGAGAGCTCGAAGATCCGCTGCTCTGCGAAGCTTACATCGCTCAATTGCTGTCCTCTTTGGATCTCGGTGCCGTAACCTGTGAAATAATTTCTCGGAAGATCACATCCGTCGTCATTGAAGTATTGGAATCCGGAAACTACGATACGAAGTTCCAGATCGCAGTGGAAATCGATCTCGTCCAGATGTTCTGGGCAGAGGAGGAGCAGAGTTCGGTTCCGGTGGAGAATGGTGAAAGGTGCGGTGTTGTGGTGGAGGAGAGGGTGGTTCTGGAGGAAGCTCCGGCGAGGAGAAGGCGGGCGGAGAGGGAGAGTAAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGAGAGAGGAGAGTTTGGAGATTGTTGTGTTTGTCACGAAGAATTGAATGATGTGAGGAAGGAGGTGAGTACAATCCAGTGTGGTCATGTCTATCATAAATCATGTATTCTCACTTGGGTTCAAAGGAGCAACTCTTGTCCCTTGTGTAGAAGGGAAATTAAATTTGAAATTTAA ATGTCTTTCGCAACTGCTTCCACCTTCCGCTACAGTATCCGAAGCAATGACGGCGCCGACCAATCTCTCCAAATCAGATTAGGATTTTTGTGGCGTGTACTCTCCCGATCACCGTCTGCCGGTCTTCCGTACGAAACCCTCTACGAAATTCCTTTAAGTTCAATGCGGGAGACTACATTCTCTCTCTATCTGCGAGAGCTCGAAGATCCGCTGCTCTGCGAAGCTTACATCGCTCAATTGCTGTCCTCTTTGGATCTCGGTGCCGTAACCTGTGAAATAATTTCTCGGAAGATCACATCCGTCGTCATTGAAGTATTGGAATCCGGAAACTACGATACGAAGTTCCAGATCGCAGTGGAAATCGATCTCGTCCAGATGTTCTGGGCAGAGGAGGAGCAGAGTTCGGTTCCGGTGGAGAATGGTGAAAGGTGCGGTGTTGTGGTGGAGGAGAGGGTGGTTCTGGAGGAAGCTCCGGCGAGGAGAAGGCGGGCGGAGAGGGAGAGTAAGAGGTTGAAGATGGAGAAATTTGATGGGTTTGAGAGAGGAGAGTTTGGAGATTGTTGTGTTTGTCACGAAGAATTGAATGATGTGAGGAAGGAGGTGAGTACAATCCAGTGTGGTCATGTCTATCATAAATCATGTATTCTCACTTGGGTTCAAAGGAGCAACTCTTGTCCCTTGTGTAGAAGGGAAATTAAATTTGAAATTTAA MSFATASTFRYSIRSNDGADQSLQIRLGFLWRVLSRSPSAGLPYETLYEIPLSSMRETTFSLYLRELEDPLLCEAYIAQLLSSLDLGAVTCEIISRKITSVVIEVLESGNYDTKFQIAVEIDLVQMFWAEEEQSSVPVENGERCGVVVEERVVLEEAPARRRRAERESKRLKMEKFDGFERGEFGDCCVCHEELNDVRKEVSTIQCGHVYHKSCILTWVQRSNSCPLCRREIKFEI Homology
BLAST of HG10003182 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida]) HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105 Identity = 195/236 (82.63%), Postives = 211/236 (89.41%), Query Frame = 0
BLAST of HG10003182 vs. NCBI nr
Match: KAE8650076.1 (hypothetical protein Csa_011336 [Cucumis sativus]) HSP 1 Score: 272.3 bits (695), Expect = 3.9e-69 Identity = 153/241 (63.49%), Postives = 175/241 (72.61%), Query Frame = 0
BLAST of HG10003182 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]) HSP 1 Score: 261.2 bits (666), Expect = 8.9e-66 Identity = 138/233 (59.23%), Postives = 167/233 (71.67%), Query Frame = 0
BLAST of HG10003182 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 208.0 bits (528), Expect = 9.0e-50 Identity = 107/233 (45.92%), Postives = 150/233 (64.38%), Query Frame = 0
BLAST of HG10003182 vs. NCBI nr
Match: KAG6605180.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 206.5 bits (524), Expect = 2.6e-49 Identity = 112/232 (48.28%), Postives = 151/232 (65.09%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07 Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07 Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy Swiss-Prot
Match: Q9FMM4 (Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07 Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06 Identity = 19/46 (41.30%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 2.2e-49 Identity = 118/235 (50.21%), Postives = 150/235 (63.83%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48 Identity = 111/232 (47.84%), Postives = 152/232 (65.52%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 4.1e-48 Identity = 111/232 (47.84%), Postives = 149/232 (64.22%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 7.7e-47 Identity = 113/235 (48.09%), Postives = 150/235 (63.83%), Query Frame = 0
BLAST of HG10003182 vs. ExPASy TrEMBL
Match: A0A5D3D7E9 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001290 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45 Identity = 124/203 (61.08%), Postives = 141/203 (69.46%), Query Frame = 0
BLAST of HG10003182 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09 Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of HG10003182 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein ) HSP 1 Score: 58.5 bits (140), Expect = 8.2e-09 Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0
BLAST of HG10003182 vs. TAIR 10
Match: AT5G67120.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08 Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 0
BLAST of HG10003182 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.0 bits (136), Expect = 2.4e-08 Identity = 21/50 (42.00%), Postives = 33/50 (66.00%), Query Frame = 0
BLAST of HG10003182 vs. TAIR 10
Match: AT4G00335.1 (RING-H2 finger B1A ) HSP 1 Score: 57.0 bits (136), Expect = 2.4e-08 Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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