HG10003096 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003096
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	glycine-rich cell wall structural protein 1-like
Location	Chr11: 17336370 .. 17336693 (-)
RNA-Seq Expression	HG10003096
Synteny	HG10003096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCCCGCGCTCGGCGGCGGAGGCGACGGCGGCGACGGAGCTGGCGCCGGAGGCGGCGGAGACATTGGGCTTGAACTTGGGCCTGGAGGCGATGGTGGGCTGTCGGGCATTGGGCCTGGGGCTGGGCTCGATTCCATAGGCGGTGGAGAAGCTATCGTCGGTGGGATGGTGGGAGGAGCCGCCGCCGGTGGAGTTGAGATGCTTGTCGGCGGTGACGCTTCAGGGGGCGGTGTAGTCGGGGGAGCTGCAACCGGCGATGGGGTTGACGGCGGCGGTGCGGCGGCGGAGGCGGGACCTGGAGCAGGGGAGGGAGATTGA

mRNA sequence

ATGGAAAATCCCGCGCTCGGCGGCGGAGGCGACGGCGGCGACGGAGCTGGCGCCGGAGGCGGCGGAGACATTGGGCTTGAACTTGGGCCTGGAGGCGATGGTGGGCTGTCGGGCATTGGGCCTGGGGCTGGGCTCGATTCCATAGGCGGTGGAGAAGCTATCGTCGGTGGGATGGTGGGAGGAGCCGCCGCCGGTGGAGTTGAGATGCTTGTCGGCGGTGACGCTTCAGGGGGCGGTGTAGTCGGGGGAGCTGCAACCGGCGATGGGGTTGACGGCGGCGGTGCGGCGGCGGAGGCGGGACCTGGAGCAGGGGAGGGAGATTGA

Coding sequence (CDS)

ATGGAAAATCCCGCGCTCGGCGGCGGAGGCGACGGCGGCGACGGAGCTGGCGCCGGAGGCGGCGGAGACATTGGGCTTGAACTTGGGCCTGGAGGCGATGGTGGGCTGTCGGGCATTGGGCCTGGGGCTGGGCTCGATTCCATAGGCGGTGGAGAAGCTATCGTCGGTGGGATGGTGGGAGGAGCCGCCGCCGGTGGAGTTGAGATGCTTGTCGGCGGTGACGCTTCAGGGGGCGGTGTAGTCGGGGGAGCTGCAACCGGCGATGGGGTTGACGGCGGCGGTGCGGCGGCGGAGGCGGGACCTGGAGCAGGGGAGGGAGATTGA

Protein sequence

MENPALGGGGDGGDGAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAAAEAGPGAGEGD

Homology

[Close]

BLAST of HG10003096 vs. NCBI nr
Match: XP_016900591.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-24
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MENPALGGGGDGGD--GAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIV-GG 60
           MENPALGGG DGGD  GAGAGGG DIG  L  GGDGGLSGIGPGAGL SIGGG+AI+ GG
Sbjct: 1   MENPALGGGDDGGDGPGAGAGGGEDIGPGLSLGGDGGLSGIGPGAGLSSIGGGDAIIGGG 60

Query: 61  MVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAAAEAGPGAGEGD 108
           + GG AAGGVEML GG+A+GGGVVGG+ATG GVDGGGAA EAGPG GEGD
Sbjct: 61  VAGGVAAGGVEMLGGGEAAGGGVVGGSATGGGVDGGGAAEEAGPGEGEGD 110

[Close]

BLAST of HG10003096 vs. NCBI nr
Match: KAG6577661.1 (hypothetical protein SDJN03_25235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 82/115 (71.30%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MENPALGGGGDGGDGAGAGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVGGM 60
           +ENPA  GGGDGGDGA AG G + G   GPGGDGGLSGI  GPG G DSI GGEAI GG 
Sbjct: 20  IENPA-PGGGDGGDGADAGAGSEDGPGDGPGGDGGLSGIVLGPGLGPDSIDGGEAIGGGT 79

Query: 61  VGGAAAGGVEMLVGGDAS------GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD 108
           VGGAA GGV+ML GG+A+      GGGVVGGAATG GV+GGGAA  AGPGAGEGD
Sbjct: 80  VGGAAIGGVDMLGGGEAAIGGMAVGGGVVGGAATGGGVNGGGAAT-AGPGAGEGD 132

[Close]

BLAST of HG10003096 vs. NCBI nr
Match: XP_031738671.1 (glycine-rich cell wall structural protein 1-like [Cucumis sativus] >KAE8650043.1 hypothetical protein Csa_010382 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-14
Identity = 76/101 (75.25%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1  MENPALGGGGDGGDGAGAGG--GGDIGLELGPGGDGGLSGI-GPGAG--LDSIGGGEAIV 60
          MENPAL G  DGG GAGAG   GGDIGL L  GGDGG SGI GPGAG  L SIGGG+AI+
Sbjct: 1  MENPALRGRADGGVGAGAGAGPGGDIGLWL--GGDGGPSGIAGPGAGAVLGSIGGGDAII 60

Query: 61 GGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAA 97
          GG+  GAAAGGVEML GG+A+GGGVVGG ATG GVDGGGAA
Sbjct: 61 GGVAVGAAAGGVEMLDGGEAAGGGVVGGGATGGGVDGGGAA 99

[Close]

BLAST of HG10003096 vs. NCBI nr
Match: XP_023007607.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-13
Identity = 78/117 (66.67%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MENPALGGGGDGGDGAG--AGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVG 60
           +ENPA GGGGDGGDG G  AG G + G   GPGGDGGLSGI  GPG G DSI GGEAI G
Sbjct: 20  IENPAPGGGGDGGDGDGADAGDGSEDGPGDGPGGDGGLSGIVLGPGLGPDSIDGGEAIGG 79

Query: 61  GMVGGAAAGGVEMLVGGDAS------GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD 108
           G VGGAA GGV+ML GG+A+      GG VVGGAA G G++GG A   AGPGAGEGD
Sbjct: 80  GTVGGAAIGGVDMLGGGEAAVGGMAVGGSVVGGAAIGGGINGGDAVT-AGPGAGEGD 135

[Close]

BLAST of HG10003096 vs. ExPASy TrEMBL
Match: A0A1S4DX83 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC107990965 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.2e-24
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MENPALGGGGDGGD--GAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIV-GG 60
           MENPALGGG DGGD  GAGAGGG DIG  L  GGDGGLSGIGPGAGL SIGGG+AI+ GG
Sbjct: 1   MENPALGGGDDGGDGPGAGAGGGEDIGPGLSLGGDGGLSGIGPGAGLSSIGGGDAIIGGG 60

Query: 61  MVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAAAEAGPGAGEGD 108
           + GG AAGGVEML GG+A+GGGVVGG+ATG GVDGGGAA EAGPG GEGD
Sbjct: 61  VAGGVAAGGVEMLGGGEAAGGGVVGGSATGGGVDGGGAAEEAGPGEGEGD 110

[Close]

BLAST of HG10003096 vs. ExPASy TrEMBL
Match: A0A6J1KZ66 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111500185 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 78/117 (66.67%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MENPALGGGGDGGDGAG--AGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVG 60
           +ENPA GGGGDGGDG G  AG G + G   GPGGDGGLSGI  GPG G DSI GGEAI G
Sbjct: 20  IENPAPGGGGDGGDGDGADAGDGSEDGPGDGPGGDGGLSGIVLGPGLGPDSIDGGEAIGG 79

Query: 61  GMVGGAAAGGVEMLVGGDAS------GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD 108
           G VGGAA GGV+ML GG+A+      GG VVGGAA G G++GG A   AGPGAGEGD
Sbjct: 80  GTVGGAAIGGVDMLGGGEAAVGGMAVGGSVVGGAAIGGGINGGDAVT-AGPGAGEGD 135

The following BLAST results are available for this feature:

BLAST of HG10003096 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900591.1	6.5e-24	80.00	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
KAG6577661.1	1.9e-15	71.30	hypothetical protein SDJN03_25235, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_031738671.1	3.6e-14	75.25	glycine-rich cell wall structural protein 1-like [Cucumis sativus] >KAE8650043.1...	[more]
XP_023007607.1	3.0e-13	66.67	glycine-rich protein 5-like [Cucurbita maxima]	[more]

BLAST of HG10003096 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DX83	3.2e-24	80.00	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KZ66	1.5e-13	66.67	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111500185 PE=4 SV=...	[more]

BLAST of HG10003096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003096.1	HG10003096.1	mRNA