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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGAAGGCCAATTCTTGGCACCAATGGTGGTGGCTTAGGAGATGTCACCTTGTTCAGTTCTGGTGGCTTATTTTTGCTTTCAACCATCCTGCTATCAATCTCTCTCATTACAATCACCATATTTGCTTGCAGTCACTCTCAAAACAAAAAGAAAAAATATGATGGCGGCATCGACGGCGGCGGCGGCGGTACAGACGGTGGCGGCACGGATGGTGGCGGAGGAGGAGATGGAGGTGGTGGCGGAGGAGATGGAGGCGGTGGTGGTGGTTGTGGCTGCGGAGGTGGAGGTGGAGGTTAA mRNA sequence ATGGGAAGGCCAATTCTTGGCACCAATGGTGGTGGCTTAGGAGATGTCACCTTGTTCAGTTCTGGTGGCTTATTTTTGCTTTCAACCATCCTGCTATCAATCTCTCTCATTACAATCACCATATTTGCTTGCAGTCACTCTCAAAACAAAAAGAAAAAATATGATGGCGGCATCGACGGCGGCGGCGGCGGTACAGACGGTGGCGGCACGGATGGTGGCGGAGGAGGAGATGGAGGTGGTGGCGGAGGAGATGGAGGCGGTGGTGGTGGTTGTGGCTGCGGAGGTGGAGGTGGAGGTTAA Coding sequence (CDS) ATGGGAAGGCCAATTCTTGGCACCAATGGTGGTGGCTTAGGAGATGTCACCTTGTTCAGTTCTGGTGGCTTATTTTTGCTTTCAACCATCCTGCTATCAATCTCTCTCATTACAATCACCATATTTGCTTGCAGTCACTCTCAAAACAAAAAGAAAAAATATGATGGCGGCATCGACGGCGGCGGCGGCGGTACAGACGGTGGCGGCACGGATGGTGGCGGAGGAGGAGATGGAGGTGGTGGCGGAGGAGATGGAGGCGGTGGTGGTGGTTGTGGCTGCGGAGGTGGAGGTGGAGGTTAA Protein sequence MGRPILGTNGGGLGDVTLFSSGGLFLLSTILLSISLITITIFACSHSQNKKKKYDGGIDGGGGGTDGGGTDGGGGGDGGGGGGDGGGGGGCGCGGGGGG
Homology
BLAST of HG10003077 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06 Identity = 66/101 (65.35%), Postives = 75/101 (74.26%), Query Frame = 0
Query: 1 MGRPILGTNGGGLGDVTLFSSGGLFLLSTILLSISLITITIFAC--SHSQNKKKKYDGGI 60
MGR I +GGGLGDVTLFSSGGL LL+T+LLS+SL+++ IFAC S S NK+K+ GG
Sbjct: 1 MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60
Query: 61 DGGGGGTDGGGTDGGGGGDGGGGGGDGGGGGGCGCGGGGGG 100
GGGGG GG GGGG GGGGG G GGG GCGGGGGG
Sbjct: 61 GGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGG 101
BLAST of HG10003077 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04 Identity = 59/94 (62.77%), Postives = 65/94 (69.15%), Query Frame = 0
Query: 1 MGRPILGTNGGGLG--DVTLFSSGGLFLLSTILLSISLITITIFACSHSQNKKKKYDGGI 60
MGRPIL GGG G DVTL SSGGLFLLS ILLSISL+++ IFAC +S + K+K
Sbjct: 1 MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRK----- 60
Query: 61 DGGGGGTDGGGTDGGGGGDGGGGGGDGGGGGGCG 93
DGGG G GGGDGGGGGG GGG GGCG
Sbjct: 61 -------DGGG--GCGGGDGGGGGGCGGGCGGCG 80
BLAST of HG10003077 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04 Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0
Query: 1 MGRPILGTNGGGLGDVTLFSSGGLFLLSTILLSISLITITIFACSHSQNKKKKYDGGIDG 60
MGRPI +GGGLGDVTLFSSGGL LL+TIL+S+SL+++ IFAC S K K+
Sbjct: 1 MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKR------- 60
Query: 61 GGGGTDGGGTDGGGGGDGGGGGGDGGGGG 90
+GGGGG G GGGG GGGGG
Sbjct: 61 --------KRNGGGGGAGCGGGGCGGGGG 74
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6603228.1 | 2.6e-06 | 65.35 | hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6604774.1 | 2.4e-04 | 62.77 | hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6603229.1 | 3.1e-04 | 56.18 | hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 47..99 |
Relationships
The following mRNA feature(s) are a part of this gene:
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