HG10003021 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003021
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ubiquitin carboxyl-terminal hydrolase 20 isoform B
Location	Chr11: 16422592 .. 16422810 (-)
RNA-Seq Expression	HG10003021
Synteny	HG10003021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGATTGGAAATGAAGCCATGGGAGACGATACGCCAACCCCAACTCCGACGAGCTCATCATCGGAGGCTGCAAGTAGACATGTAGTGGTCGTCATGGATGGAATGGAAGAGTTCACGACGGAGCCACTCAAATGGGCGTTGGAGAATGTCATTATGCCTGGTTGCGTCGTTACTCTCATCGGTGCAATGCCATGGCTCAACATTCCTCGTTAG

mRNA sequence

ATGGCAGAGATTGGAAATGAAGCCATGGGAGACGATACGCCAACCCCAACTCCGACGAGCTCATCATCGGAGGCTGCAAGTAGACATGTAGTGGTCGTCATGGATGGAATGGAAGAGTTCACGACGGAGCCACTCAAATGGGCGTTGGAGAATGTCATTATGCCTGGTTGCGTCGTTACTCTCATCGGTGCAATGCCATGGCTCAACATTCCTCGTTAG

Coding sequence (CDS)

ATGGCAGAGATTGGAAATGAAGCCATGGGAGACGATACGCCAACCCCAACTCCGACGAGCTCATCATCGGAGGCTGCAAGTAGACATGTAGTGGTCGTCATGGATGGAATGGAAGAGTTCACGACGGAGCCACTCAAATGGGCGTTGGAGAATGTCATTATGCCTGGTTGCGTCGTTACTCTCATCGGTGCAATGCCATGGCTCAACATTCCTCGTTAG

Protein sequence

MAEIGNEAMGDDTPTPTPTSSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMPGCVVTLIGAMPWLNIPR

Homology

[Close]

BLAST of HG10003021 vs. NCBI nr
Match: XP_038903690.1 (uncharacterized protein LOC120090215 isoform X2 [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 68/76 (89.47%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MAEIGNEAMGDDTPTPTPT-----SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMP 60
          MAE GNEAMGDDTPTPTPT     SSSSEAASRHVVVVMDGMEEFTTEPLKWAL+NVI P
Sbjct: 1  MAEAGNEAMGDDTPTPTPTPTPTLSSSSEAASRHVVVVMDGMEEFTTEPLKWALDNVIKP 60

Query: 61 GCVVTLIGAMPWLNIP 72
          GCVVTLIGAMPWLNIP
Sbjct: 61 GCVVTLIGAMPWLNIP 76

[Close]

BLAST of HG10003021 vs. NCBI nr
Match: XP_038903689.1 (uncharacterized protein LOC120090215 isoform X1 [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 68/76 (89.47%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MAEIGNEAMGDDTPTPTPT-----SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMP 60
          MAE GNEAMGDDTPTPTPT     SSSSEAASRHVVVVMDGMEEFTTEPLKWAL+NVI P
Sbjct: 1  MAEAGNEAMGDDTPTPTPTPTPTLSSSSEAASRHVVVVMDGMEEFTTEPLKWALDNVIKP 60

Query: 61 GCVVTLIGAMPWLNIP 72
          GCVVTLIGAMPWLNIP
Sbjct: 61 GCVVTLIGAMPWLNIP 76

[Close]

BLAST of HG10003021 vs. NCBI nr
Match: XP_023007589.1 (uncharacterized protein LOC111500162 [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAEIGNEAMGDD---TPTPTPT-SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMPG 60
          MAE G+EAMGDD   TPTPTP+ SSSSEAA+RH+VVVMDGMEEFTT+PL+WAL+N+I PG
Sbjct: 1  MAEAGDEAMGDDDMATPTPTPSFSSSSEAANRHIVVVMDGMEEFTTKPLEWALDNIIKPG 60

Query: 61 CVVTLIGAMPWLNIP 72
          CVVTLIGAMPWLNIP
Sbjct: 61 CVVTLIGAMPWLNIP 75

[Close]

BLAST of HG10003021 vs. NCBI nr
Match: XP_011652714.1 (uncharacterized protein DDB_G0290685 isoform X1 [Cucumis sativus] >KAE8650025.1 hypothetical protein Csa_010541 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 4.4e-24
Identity = 61/84 (72.62%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MAEIGNEAMGDDTPTPTPT-------------SSSSEAASRHVVVVMDGMEEFTTEPLKW 60
          MA  GNE M DDTPTPTPT             SS+SEAASRHVVVVMDGMEEFTT+PLKW
Sbjct: 1  MAGAGNEDMEDDTPTPTPTQTPTPTPTPTPTLSSTSEAASRHVVVVMDGMEEFTTDPLKW 60

Query: 61 ALENVIMPGCVVTLIGAMPWLNIP 72
          AL+NVI PGC+VTL+GAMPWLNIP
Sbjct: 61 ALDNVIKPGCIVTLVGAMPWLNIP 84

[Close]

BLAST of HG10003021 vs. NCBI nr
Match: XP_008448679.1 (PREDICTED: uncharacterized protein LOC103490778 isoform X1 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MAEIGNEAMGDDTPTPTPT-----SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMP 60
          MA  GNE M DDT TPTPT     SS+SEAA+RHVVVVMDGMEEFTT PL+WAL+NVI P
Sbjct: 1  MAGAGNEDMEDDTRTPTPTPTPTLSSTSEAANRHVVVVMDGMEEFTTHPLEWALDNVIKP 60

Query: 61 GCVVTLIGAMPWLNIP 72
          GC+VTL+GAMPWLNIP
Sbjct: 61 GCLVTLVGAMPWLNIP 76

[Close]

BLAST of HG10003021 vs. ExPASy TrEMBL
Match: A0A6J1L5D0 (uncharacterized protein LOC111500162 OS=Cucurbita maxima OX=3661 GN=LOC111500162 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.6e-25
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAEIGNEAMGDD---TPTPTPT-SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMPG 60
          MAE G+EAMGDD   TPTPTP+ SSSSEAA+RH+VVVMDGMEEFTT+PL+WAL+N+I PG
Sbjct: 1  MAEAGDEAMGDDDMATPTPTPSFSSSSEAANRHIVVVMDGMEEFTTKPLEWALDNIIKPG 60

Query: 61 CVVTLIGAMPWLNIP 72
          CVVTLIGAMPWLNIP
Sbjct: 61 CVVTLIGAMPWLNIP 75

[Close]

BLAST of HG10003021 vs. ExPASy TrEMBL
Match: A0A0A0L195 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011090 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 61/84 (72.62%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MAEIGNEAMGDDTPTPTPT-------------SSSSEAASRHVVVVMDGMEEFTTEPLKW 60
          MA  GNE M DDTPTPTPT             SS+SEAASRHVVVVMDGMEEFTT+PLKW
Sbjct: 1  MAGAGNEDMEDDTPTPTPTQTPTPTPTPTPTLSSTSEAASRHVVVVMDGMEEFTTDPLKW 60

Query: 61 ALENVIMPGCVVTLIGAMPWLNIP 72
          AL+NVI PGC+VTL+GAMPWLNIP
Sbjct: 61 ALDNVIKPGCIVTLVGAMPWLNIP 84

[Close]

BLAST of HG10003021 vs. ExPASy TrEMBL
Match: A0A1S3BJN1 (uncharacterized protein LOC103490778 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490778 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MAEIGNEAMGDDTPTPTPT-----SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMP 60
          MA  GNE M DDT TPTPT     SS+SEAA+RHVVVVMDGMEEFTT PL+WAL+NVI P
Sbjct: 1  MAGAGNEDMEDDTRTPTPTPTPTLSSTSEAANRHVVVVMDGMEEFTTHPLEWALDNVIKP 60

Query: 61 GCVVTLIGAMPWLNIP 72
          GC+VTL+GAMPWLNIP
Sbjct: 61 GCLVTLVGAMPWLNIP 76

[Close]

BLAST of HG10003021 vs. ExPASy TrEMBL
Match: A0A5D3CIU8 (Ubiquitin carboxyl-terminal hydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001590 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-22
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 5   GNEAMGDDTPTPTPT-----SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMPGCVV 64
           GNE M DDT TPTPT     SS+SEAA+RHVVVVMDGMEEFTT PL+WAL+NVI PGC+V
Sbjct: 654 GNEDMEDDTRTPTPTPTPTLSSTSEAANRHVVVVMDGMEEFTTHPLEWALDNVIKPGCLV 713

Query: 65  TLIGAMPWLNIP 72
           TL+GAMPWLNIP
Sbjct: 714 TLVGAMPWLNIP 725

[Close]

BLAST of HG10003021 vs. ExPASy TrEMBL
Match: A0A1S3BKA1 (uncharacterized protein LOC103490778 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490778 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 9  MGDDTPTPTPT-----SSSSEAASRHVVVVMDGMEEFTTEPLKWALENVIMPGCVVTLIG 68
          M DDT TPTPT     SS+SEAA+RHVVVVMDGMEEFTT PL+WAL+NVI PGC+VTL+G
Sbjct: 1  MEDDTRTPTPTPTPTLSSTSEAANRHVVVVMDGMEEFTTHPLEWALDNVIKPGCLVTLVG 60

Query: 69 AMPWLNIP 72
          AMPWLNIP
Sbjct: 61 AMPWLNIP 68

The following BLAST results are available for this feature:

BLAST of HG10003021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903690.1	2.3e-28	89.47	uncharacterized protein LOC120090215 isoform X2 [Benincasa hispida]	[more]
XP_038903689.1	2.3e-28	89.47	uncharacterized protein LOC120090215 isoform X1 [Benincasa hispida]	[more]
XP_023007589.1	1.2e-24	81.33	uncharacterized protein LOC111500162 [Cucurbita maxima]	[more]
XP_011652714.1	4.4e-24	72.62	uncharacterized protein DDB_G0290685 isoform X1 [Cucumis sativus] >KAE8650025.1 ...	[more]
XP_008448679.1	1.1e-22	76.32	PREDICTED: uncharacterized protein LOC103490778 isoform X1 [Cucumis melo]	[more]

BLAST of HG10003021 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L5D0	5.6e-25	81.33	uncharacterized protein LOC111500162 OS=Cucurbita maxima OX=3661 GN=LOC111500162...	[more]
A0A0A0L195	2.1e-24	72.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011090 PE=4 SV=1	[more]
A0A1S3BJN1	5.2e-23	76.32	uncharacterized protein LOC103490778 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3CIU8	3.4e-22	77.78	Ubiquitin carboxyl-terminal hydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BKA1	1.4e-20	77.94	uncharacterized protein LOC103490778 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of HG10003021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR33563:SF9	SUBFAMILY NOT NAMED	coord: 1..71
IPR002812	3-dehydroquinate synthase	PANTHER	PTHR33563	FAMILY NOT NAMED	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003021.1	HG10003021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0008652	cellular amino acid biosynthetic process
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0003856	3-dehydroquinate synthase activity
molecular_function	GO:0042973	glucan endo-1,3-beta-D-glucosidase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004843	thiol-dependent deubiquitinase